MGE detailed information
MGE type: Conjugative plasmid MGE length: 114223 bp
Accession: NZ_CP014496 Location: 1..114223 Organism: Escherichia coli strain SaT040 Replicon: plasmid pSaT040
Accession: NZ_CP014496 Location: 1..114223 Organism: Escherichia coli strain SaT040 Replicon: plasmid pSaT040
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVR72_RS25300 () | 276..1784 | - | 1509 | WP_001189113.1 | group II intron reverse transcriptase/maturase | - |
| AVR72_RS28980 () | 2457..3196 | - | 740 | Protein_2 | IS3 family transposase IS629 | Transposase |
| AVR72_RS25325 () | 3298..3558 | + | 261 | WP_000371882.1 | hypothetical protein | - |
| AVR72_RS25330 () | 3555..4064 | + | 510 | WP_000194542.1 | hypothetical protein | - |
| AVR72_RS25335 () | 4084..4431 | - | 348 | WP_000142452.1 | hypothetical protein | - |
| AVR72_RS25340 () | 4560..4895 | + | 336 | WP_001080732.1 | colicin transporter | - |
| AVR72_RS28985 () | 6347..6991 | + | 645 | Protein_7 | replication initiation protein | - |
| AVR72_RS25355 () | 7364..8239 | + | 876 | WP_001224623.1 | ChaN family lipoprotein | - |
| AVR72_RS25360 () | 8247..9023 | + | 777 | WP_000981091.1 | energy transducer TonB | - |
| AVR72_RS25365 () | 9192..11453 | + | 2262 | WP_001100763.1 | TonB-dependent receptor | - |
| AVR72_RS25370 () | 11522..12697 | + | 1176 | WP_001020413.1 | putative protein YncE | VF |
| AVR72_RS28995 () | 13220..13525 | - | 306 | Protein_12 | IS91 family transposase ISSbo1 | Transposase |
| AVR72_RS28385 () | 13551..14128 | + | 578 | Protein_13 | IS3 family transposase IS629 | Transposase |
| AVR72_RS25385 () | 14019..14774 | - | 756 | WP_000065240.1 | IS21 family transposase ISEc10 | Transposase |
| AVR72_RS25390 () | 14771..16270 | - | 1500 | WP_000143800.1 | IS21 family transposase ISEc10 | Transposase |
| AVR72_RS27745 () | 16356..16706 | + | 351 | Protein_16 | IS3 family transposase | - |
| AVR72_RS29190 () | 17378..17692 | + | 315 | Protein_17 | IS5 family transposase ISKpn26 | Transposase |
| AVR72_RS29195 () | 17693..17866 | + | 174 | Protein_18 | IS5 family transposase ISKpn26 | Transposase |
| AVR72_RS28395 () | 18016..18649 | - | 634 | Protein_19 | histidine-type phosphatase | - |
| AVR72_RS25420 () | 18771..19256 | - | 486 | WP_000874189.1 | hypothetical protein | - |
| AVR72_RS25425 () | 19281..19766 | - | 486 | WP_001267176.1 | TlpA family protein disulfide reductase | - |
| AVR72_RS25430 () | 19753..20448 | - | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| AVR72_RS25435 () | 20453..21583 | - | 1131 | WP_000729218.1 | ABC transporter permease | - |
| AVR72_RS25440 () | 21573..22856 | - | 1284 | WP_000964653.1 | ABC transporter permease | - |
| AVR72_RS25445 () | 22859..24238 | - | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
| AVR72_RS25450 () | 24342..24869 | - | 528 | WP_000178050.1 | iron transporter | - |
| AVR72_RS25455 () | 24910..26796 | - | 1887 | WP_001332815.1 | FTR1 family iron permease | - |
| AVR72_RS25460 () | 27143..27958 | - | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| AVR72_RS25465 () | 28141..28647 | - | 507 | WP_000949451.1 | protein disulfide oxidoreductase | - |
| AVR72_RS25470 () | 28637..28864 | - | 228 | WP_077459403.1 | DsbA family protein | - |
| AVR72_RS25475 () | 28894..29598 | - | 705 | WP_001067837.1 | IS6 family transposase IS26 | Transposase |
| AVR72_RS25485 () | 30654..31511 | - | 858 | WP_000131004.1 | incFII family plasmid replication initiator RepA | - |
| AVR72_RS25490 () | 31504..31578 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| AVR72_RS25495 () | 31811..32071 | - | 261 | WP_000078109.1 | replication regulatory protein RepA | - |
| AVR72_RS25500 () | 32311..32901 | - | 591 | WP_000766808.1 | DUF2726 domain-containing protein | - |
| AVR72_RS25505 () | 32939..33148 | - | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| AVR72_RS25510 () | 33194..33655 | - | 462 | WP_001233838.1 | thermonuclease family protein | - |
| AVR72_RS25515 () | 33900..34112 | - | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| AVR72_RS25520 () | 34241..34801 | - | 561 | WP_000139321.1 | fertility inhibition protein FinO | - |
| AVR72_RS25525 () | 34904..35764 | - | 861 | WP_000704523.1 | putative protein YcjY | VF |
| AVR72_RS25530 () | 35823..36569 | - | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| AVR72_RS25535 () | 36589..41859 | - | 5271 | WP_061186102.1 | Multifunctional conjugation protein TraI | Relaxase |
| AVR72_RS25540 () | 41859..44003 | - | 2145 | WP_000009347.1 | type IV conjugative transfer system coupling protein TraD | - |
| AVR72_RS25545 () | 44054..44791 | - | 738 | WP_000199901.1 | hypothetical protein | - |
| AVR72_RS25550 () | 44994..45725 | - | 732 | WP_000782451.1 | complement resistance protein TraT | - |
| AVR72_RS25555 () | 45774..46259 | - | 486 | WP_000605869.1 | hypothetical protein | - |
| AVR72_RS25560 () | 46275..49097 | - | 2823 | WP_001007080.1 | conjugal transfer mating pair stabilization protein TraG | - |
| AVR72_RS25565 () | 49094..50466 | - | 1373 | Protein_48 | conjugal transfer protein TraH | - |
| AVR72_RS25570 () | 50453..50878 | - | 426 | WP_001323332.1 | F-type conjugal transfer protein TrbF | - |
| AVR72_RS25575 () | 50826..51173 | - | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| AVR72_RS25580 () | 51103..51648 | - | 546 | WP_000059830.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| AVR72_RS25585 () | 51635..51919 | - | 285 | WP_000624107.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| AVR72_RS25590 () | 52000..52335 | + | 336 | WP_000736414.1 | hypothetical protein | - |
| AVR72_RS27795 () | 52316..52657 | - | 342 | WP_001298557.1 | conjugal transfer protein TrbA | - |
| AVR72_RS25600 () | 52671..53413 | - | 743 | Protein_55 | type-F conjugative transfer system pilin assembly protein TraF | - |
| AVR72_RS25605 () | 53406..53663 | - | 258 | WP_000864314.1 | conjugal transfer protein TrbE | - |
| AVR72_RS25610 () | 53690..55539 | - | 1850 | Protein_57 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| AVR72_RS25615 () | 55536..56174 | - | 639 | WP_001080251.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| AVR72_RS25620 () | 56183..56488 | - | 306 | WP_000224418.1 | hypothetical protein | - |
| AVR72_RS25625 () | 56518..57510 | - | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| AVR72_RS25630 () | 57507..58139 | - | 633 | WP_001203736.1 | type-F conjugative transfer system protein TraW | - |
| AVR72_RS25635 () | 58136..58522 | - | 387 | WP_000214082.1 | type-F conjugative transfer system protein TrbI | - |
| AVR72_RS25640 () | 58519..61149 | - | 2631 | WP_000069778.1 | type IV secretion system protein TraC | - |
| AVR72_RS25645 () | 61516..61734 | - | 219 | WP_000556746.1 | hypothetical protein | - |
| AVR72_RS25650 () | 61814..62287 | - | 474 | WP_000549566.1 | hypothetical protein | - |
| AVR72_RS27800 () | 62280..62501 | - | 222 | WP_001278694.1 | conjugal transfer protein TraR | - |
| AVR72_RS25655 () | 62636..63151 | - | 516 | WP_000809889.1 | type IV conjugative transfer system lipoprotein TraV | - |
| AVR72_RS25660 () | 63148..63381 | - | 234 | WP_000235790.1 | conjugal transfer protein TrbG | - |
| AVR72_RS25665 () | 63393..63746 | - | 354 | WP_071586423.1 | conjugal transfer protein TrbD | - |
| AVR72_RS25670 () | 63700..64290 | - | 591 | WP_000002787.1 | conjugal transfer protein TraP | - |
| AVR72_RS25675 () | 64280..65707 | - | 1428 | WP_000146665.1 | conjugal transfer protein TraB | - |
| AVR72_RS25680 () | 65707..66411 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| AVR72_RS25685 () | 66422..66988 | - | 567 | WP_000399776.1 | type IV conjugative transfer system protein TraE | - |
| AVR72_RS25690 () | 67010..67321 | - | 312 | WP_000012100.1 | type IV conjugative transfer system protein TraL | - |
| AVR72_RS25695 () | 67336..67695 | - | 360 | WP_001098988.1 | type IV conjugative transfer system pilin TraA | - |
| AVR72_RS25700 () | 67729..67956 | - | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| AVR72_RS25705 () | 68050..68736 | - | 687 | WP_000332487.1 | PAS domain-containing protein | - |
| AVR72_RS25710 () | 68930..69313 | - | 384 | WP_001151562.1 | relaxosome protein TraM | - |
| AVR72_RS25715 () | 69644..70246 | + | 603 | WP_001323326.1 | hypothetical protein | VF |
| AVR72_RS25720 () | 70542..71363 | - | 822 | WP_001234489.1 | DUF945 domain-containing protein | - |
| AVR72_RS25725 () | 71482..71769 | - | 288 | WP_000107526.1 | hypothetical protein | - |
| AVR72_RS25745 () | 72685..72843 | - | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | - |
| - () | 72908..73107 | - | 200 | NuclAT_0 | - | - |
| - () | 72908..73107 | - | 200 | NuclAT_0 | - | - |
| - () | 72908..73107 | - | 200 | NuclAT_0 | - | - |
| - () | 72908..73107 | - | 200 | NuclAT_0 | - | - |
| AVR72_RS25755 () | 73119..73838 | - | 720 | WP_001276230.1 | plasmid SOS inhibition protein A | - |
| AVR72_RS25760 () | 73835..74269 | - | 435 | WP_000845910.1 | conjugation system SOS inhibitor PsiB | - |
| AVR72_RS25765 () | 74324..76282 | - | 1959 | WP_001145501.1 | ParB/RepB/Spo0J family partition protein | - |
| AVR72_RS25770 () | 76341..76574 | - | 234 | WP_000006018.1 | DUF905 domain-containing protein | - |
| AVR72_RS25775 () | 76631..77158 | - | 528 | WP_000290833.1 | single-stranded DNA-binding protein | - |
| AVR72_RS28410 () | 77460..77918 | + | 459 | WP_011478091.1 | hypothetical protein | - |
| AVR72_RS25785 () | 78004..78566 | - | 563 | Protein_89 | class I SAM-dependent methyltransferase | - |
| AVR72_RS25790 () | 78612..79973 | - | 1362 | WP_000170671.1 | DUF3560 domain-containing protein | - |
| AVR72_RS25795 () | 80025..80255 | - | 231 | WP_000155844.1 | hypothetical protein | - |
| AVR72_RS29200 () | 80768..81248 | + | 481 | Protein_92 | hypothetical protein | - |
| AVR72_RS29205 () | 81218..81409 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| AVR72_RS25805 () | 81406..81828 | - | 423 | WP_000271708.1 | DUF1380 family protein | - |
| AVR72_RS25810 () | 81875..82177 | - | 303 | WP_001666994.1 | antirestriction protein | - |
| AVR72_RS25815 () | 82716..83486 | - | 771 | WP_001004562.1 | hypothetical protein | - |
| AVR72_RS25820 () | 83531..83965 | - | 435 | WP_000274508.1 | DUF1380 family protein | - |
| AVR72_RS25825 () | 83979..84200 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| AVR72_RS25830 () | 84201..84884 | - | 684 | WP_000086169.1 | DNA methylase | - |
| AVR72_RS28435 () | 84960..85271 | - | 312 | WP_001310011.1 | hypothetical protein | - |
| AVR72_RS25840 () | 85268..85471 | - | 204 | WP_001298677.1 | hypothetical protein | - |
| AVR72_RS25845 () | 85512..86684 | + | 1173 | WP_000952372.1 | IS21 family transposase IS21 | Transposase |
| AVR72_RS25850 () | 86684..87481 | + | 798 | WP_000544830.1 | IS21 family transposase IS21 | Transposase |
| AVR72_RS25855 () | 87475..88305 | - | 831 | WP_001298676.1 | DUF1281 domain-containing protein | - |
| AVR72_RS25860 () | 88724..89944 | - | 1221 | WP_000343766.1 | ISL3 family transposase ISEc53 | Transposase |
| AVR72_RS25865 () | 89963..90481 | - | 519 | WP_000115885.1 | hypothetical protein | VF |
| AVR72_RS25870 () | 90616..90864 | + | 249 | WP_000619112.1 | DinI-like family protein | - |
| AVR72_RS25875 () | 90861..91298 | + | 438 | WP_000109079.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| AVR72_RS25880 () | 91298..92568 | + | 1271 | Protein_109 | translesion error-prone DNA polymerase V subunit UmuC | - |
| AVR72_RS25885 () | 92573..92965 | - | 393 | WP_000340835.1 | plasmid partitioning/stability family protein | - |
| AVR72_RS25890 () | 92970..93941 | - | 972 | WP_001103694.1 | hypothetical protein | - |
| AVR72_RS25895 () | 94170..94814 | + | 645 | WP_000633911.1 | AAA family ATPase | - |
| AVR72_RS25900 () | 94808..95083 | + | 276 | WP_000239529.1 | hypothetical protein | - |
| AVR72_RS25905 () | 95221..96030 | - | 810 | WP_000016979.1 | site-specific integrase | - |
| AVR72_RS25910 () | 96031..96336 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| AVR72_RS25915 () | 96338..96556 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| AVR72_RS25920 () | 98878..99519 | + | 642 | WP_000990667.1 | hypothetical protein | - |
| AVR72_RS25935 () | 100694..101671 | + | 978 | WP_001309253.1 | RepB family plasmid replication initiator protein | - |
| AVR72_RS25940 () | 101914..102654 | - | 741 | WP_001066947.1 | IS91 family transposase ISMno23 | Transposase |
| AVR72_RS25945 () | 102775..102963 | - | 189 | WP_001332784.1 | hypothetical protein | - |
| AVR72_RS25950 () | 103330..104499 | + | 1170 | WP_001072358.1 | hypothetical protein | - |
| AVR72_RS29035 () | 104725..104900 | - | 176 | Protein_122 | IS3 family transposase | - |
| AVR72_RS27870 () | 105346..105618 | - | 273 | WP_001322642.1 | adhesin biosynthesis transcription regulatory family protein | - |
| AVR72_RS25960 () | 106143..106579 | - | 437 | Protein_124 | IS3 family transposase IS2 | Transposase |
| AVR72_RS25965 () | 106861..108831 | + | 1971 | WP_001298664.1 | Hemin receptor | VF |
| AVR72_RS25970 () | 108838..109629 | + | 792 | WP_000977394.1 | DUF4198 domain-containing protein | - |
| AVR72_RS25975 () | 109692..110300 | - | 609 | Protein_127 | IS66 family transposase ISEc22 | Transposase |
| AVR72_RS25980 () | 110368..111150 | - | 783 | WP_001300609.1 | IS21 family transposase IS100kyp | Transposase |
| AVR72_RS25985 () | 111147..112169 | - | 1023 | WP_001310017.1 | IS21 family transposase IS100kyp | Transposase |
| AVR72_RS25990 () | 112255..113200 | - | 946 | Protein_130 | IS66 family transposase ISEc8 | Transposase |
| AVR72_RS26000 () | 113249..113596 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| AVR72_RS26005 () | 113593..113997 | - | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|