MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 94075 bp
Accession: NZ_CP014359 Location: 1..94075 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain YU15 Replicon: plasmid pYU15_94
Accession: NZ_CP014359 Location: 1..94075 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain YU15 Replicon: plasmid pYU15_94
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SE16cs_RS23995 () | 94..378 | + | 285 | WP_000477658.1 | hypothetical protein | - |
| SE16cs_RS24000 () | 391..546 | + | 156 | WP_000983042.1 | hypothetical protein | - |
| SE16cs_RS24005 () | 712..1154 | + | 443 | Protein_2 | phospholipase | - |
| SE16cs_RS24010 () | 1333..1599 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| SE16cs_RS24020 () | 1849..1926 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| SE16cs_RS24025 () | 1907..2788 | + | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| SE16cs_RS26075 () | 3648..3869 | + | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| SE16cs_RS24030 () | 3966..4724 | - | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| SE16cs_RS24035 () | 4991..5548 | - | 558 | WP_000725062.1 | complement resistance protein Rck | - |
| SE16cs_RS24040 () | 5638..6537 | - | 900 | WP_010999938.1 | YjiK family protein | - |
| SE16cs_RS27110 () | 6534..6680 | - | 147 | WP_001192557.1 | hypothetical protein | - |
| SE16cs_RS24045 () | 6670..7323 | - | 654 | WP_000178592.1 | DsbA family protein | - |
| SE16cs_RS24050 () | 7568..7918 | - | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| SE16cs_RS24055 () | 7903..8115 | - | 213 | WP_000004313.1 | transcriptional regulator PefI | - |
| SE16cs_RS24060 () | 8547..9422 | - | 876 | WP_014343944.1 | hypothetical protein | - |
| SE16cs_RS24065 () | 9675..10232 | - | 558 | WP_010999940.1 | membrane protein | - |
| SE16cs_RS24070 () | 10247..10939 | - | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| SE16cs_RS24075 () | 10932..13340 | - | 2409 | WP_000007893.1 | outer membrane usher protein PefC | - |
| SE16cs_RS24080 () | 13568..14086 | - | 519 | WP_000748205.1 | major pilin PefA | - |
| SE16cs_RS24085 () | 14361..14663 | - | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| SE16cs_RS24090 () | 15382..15763 | + | 382 | Protein_20 | YgiW/YdeI family stress tolerance OB fold protein | - |
| SE16cs_RS26890 () | 15932..16376 | + | 445 | Protein_21 | site-specific integrase | - |
| SE16cs_RS24100 () | 16635..17624 | - | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| SE16cs_RS26570 () | 18118..18414 | - | 297 | WP_001687482.1 | hypothetical protein | - |
| SE16cs_RS24110 () | 18898..19419 | - | 522 | WP_010999942.1 | hypothetical protein | - |
| SE16cs_RS24115 () | 20095..20313 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| SE16cs_RS24120 () | 20315..20620 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| SE16cs_RS24125 () | 20622..20912 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| SE16cs_RS24130 () | 20909..21430 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| SE16cs_RS24135 () | 21465..22247 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| SE16cs_RS24140 () | 22256..22969 | + | 714 | Protein_30 | EAL domain-containing protein | - |
| SE16cs_RS24145 () | 22973..23482 | + | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| SE16cs_RS24150 () | 23476..23961 | + | 486 | WP_000905606.1 | membrane protein | - |
| SE16cs_RS26895 () | 24238..24525 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| SE16cs_RS24160 () | 24681..25241 | + | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| SE16cs_RS24165 () | 25308..25658 | - | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| SE16cs_RS26100 () | 25715..26139 | + | 425 | Protein_36 | IS200/IS605 family transposase | - |
| SE16cs_RS24175 () | 26266..26916 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| SE16cs_RS24180 () | 27177..27902 | - | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| SE16cs_RS24185 () | 28183..29958 | - | 1776 | WP_001676648.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| SE16cs_RS27115 () | 30010..30177 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| SE16cs_RS24190 () | 30140..30907 | - | 768 | WP_001526990.1 | virulence protein SpvA | - |
| SE16cs_RS24195 () | 31081..31245 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| SE16cs_RS24200 () | 31419..32312 | - | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| SE16cs_RS24205 () | 32921..33958 | + | 1038 | WP_001121399.1 | IS630 family transposase | - |
| SE16cs_RS24210 () | 34147..35172 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| SE16cs_RS24215 () | 35105..36769 | - | 1665 | WP_000098783.1 | IS481 family transposase | - |
| SE16cs_RS24220 () | 36753..37313 | - | 561 | WP_001240331.1 | recombinase family protein | - |
| SE16cs_RS24225 () | 37520..38260 | - | 741 | WP_001541566.1 | carbonic anhydrase | - |
| SE16cs_RS24230 () | 38915..39403 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| SE16cs_RS24235 () | 39662..40777 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| SE16cs_RS24240 () | 40863..41279 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| SE16cs_RS24245 () | 41463..41798 | + | 336 | WP_001527010.1 | hypothetical protein | - |
| SE16cs_RS24250 () | 41855..42421 | + | 567 | WP_001541562.1 | DUF2913 family protein | - |
| SE16cs_RS24255 () | 42453..43394 | - | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| SE16cs_RS24260 () | 43809..45014 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| SE16cs_RS24265 () | 45014..45988 | + | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| SE16cs_RS24270 () | 46070..47344 | - | 1275 | WP_022743179.1 | Y-family DNA polymerase | - |
| SE16cs_RS24275 () | 47344..47766 | - | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| SE16cs_RS26580 () | 48277..48747 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| SE16cs_RS24285 () | 48740..49096 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| SE16cs_RS24295 () | 49478..50158 | + | 681 | WP_000088645.1 | DNA methylase | - |
| SE16cs_RS24300 () | 50158..50379 | + | 222 | WP_001109588.1 | hypothetical protein | - |
| SE16cs_RS24305 () | 50435..50848 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| SE16cs_RS24310 () | 50920..51684 | + | 765 | WP_001246548.1 | membrane protein | - |
| SE16cs_RS24315 () | 52180..52614 | + | 435 | WP_001200150.1 | antirestriction protein | - |
| SE16cs_RS24320 () | 52681..53115 | + | 435 | WP_000274533.1 | DUF1380 family protein | - |
| SE16cs_RS24325 () | 53351..53674 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| SE16cs_RS26980 () | 53638..53889 | + | 252 | WP_157763129.1 | hypothetical protein | - |
| SE16cs_RS24335 () | 54483..55001 | + | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| SE16cs_RS24340 () | 55056..55298 | + | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| SE16cs_RS24345 () | 55367..57364 | + | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| SE16cs_RS24350 () | 57404..57838 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| SE16cs_RS24355 () | 57835..58572 | + | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| SE16cs_RS27010 () | 58821..58979 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| SE16cs_RS27120 () | 59082..59900 | + | 819 | Protein_75 | DUF945 domain-containing protein | - |
| SE16cs_RS24370 () | 60211..60681 | - | 471 | WP_001526856.1 | transglycosylase SLT domain-containing protein | - |
| SE16cs_RS24375 () | 61096..61476 | + | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| SE16cs_RS24380 () | 61669..62355 | + | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| SE16cs_RS26135 () | 62450..62677 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| SE16cs_RS24385 () | 62719..63081 | + | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| SE16cs_RS24390 () | 63096..63407 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| SE16cs_RS24395 () | 63429..63995 | + | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| SE16cs_RS24400 () | 63982..64722 | + | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| SE16cs_RS24405 () | 64722..66143 | + | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| SE16cs_RS24410 () | 66133..66729 | + | 597 | WP_000527896.1 | conjugal transfer protein TraP | - |
| SE16cs_RS24415 () | 66707..66952 | + | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| SE16cs_RS24420 () | 66949..67464 | + | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| SE16cs_RS24425 () | 67599..67820 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| SE16cs_RS24430 () | 67813..68280 | + | 468 | WP_000549562.1 | hypothetical protein | - |
| SE16cs_RS24435 () | 68397..68660 | + | 264 | WP_001239256.1 | hypothetical protein | - |
| SE16cs_RS24440 () | 68676..71324 | + | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| SE16cs_RS24445 () | 71299..71685 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| SE16cs_RS24450 () | 71682..72314 | + | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| SE16cs_RS24455 () | 72311..73303 | + | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| SE16cs_RS24460 () | 73322..73630 | + | 309 | WP_010999945.1 | hypothetical protein | - |
| SE16cs_RS24465 () | 73615..74253 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| SE16cs_RS24470 () | 74290..74709 | + | 420 | WP_001229397.1 | HNH endonuclease | - |
| SE16cs_RS24475 () | 74706..76532 | + | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| SE16cs_RS24480 () | 76543..76758 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| SE16cs_RS24485 () | 76770..77519 | + | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| SE16cs_RS24490 () | 77733..78026 | + | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| SE16cs_RS24495 () | 78013..78561 | + | 549 | WP_022743183.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| SE16cs_RS24500 () | 78551..79933 | + | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| SE16cs_RS24505 () | 79930..82752 | + | 2823 | WP_001007086.1 | conjugal transfer mating pair stabilization protein TraG | - |
| SE16cs_RS24510 () | 82768..83241 | + | 474 | WP_077948564.1 | entry exclusion protein | - |
| SE16cs_RS24515 () | 83298..84029 | + | 732 | WP_022743186.1 | complement resistance protein TraT | - |
| SE16cs_RS24520 () | 84406..86703 | + | 2298 | WP_057523466.1 | type IV conjugative transfer system coupling protein TraD | - |
| SE16cs_RS24525 () | 86712..87110 | - | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | - |
| SE16cs_RS24530 () | 87110..87337 | - | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | - |
| SE16cs_RS24535 () | 87419..92676 | + | 5258 | Protein_110 | conjugative transfer relaxase/helicase TraI | - |
| SE16cs_RS24540 () | 92696..93436 | + | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| SE16cs_RS24545 () | 93491..94054 | + | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|