MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 60086 bp
Accession: NZ_CP013817 Location: 1..60086 Organism: Piscirickettsia salmonis strain AY3800B Replicon: plasmid p1PS10
Accession: NZ_CP013817 Location: 1..60086 Organism: Piscirickettsia salmonis strain AY3800B Replicon: plasmid p1PS10
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVM72_RS15720 () | 893..1075 | - | 183 | WP_069971677.1 | hypothetical protein | - |
| AVM72_RS15725 () | 1168..1662 | - | 495 | WP_069971678.1 | hypothetical protein | - |
| AVM72_RS20315 () | 1759..2073 | + | 315 | WP_036774182.1 | WGR domain-containing protein | - |
| AVM72_RS15735 () | 2430..2741 | + | 312 | WP_027242583.1 | type II toxin-antitoxin system HigB family toxin | - |
| AVM72_RS15740 () | 2738..3139 | + | 402 | WP_027242582.1 | helix-turn-helix domain-containing protein | - |
| AVM72_RS15745 () | 3149..5335 | - | 2187 | WP_027242581.1 | ATP-dependent RecD-like DNA helicase | - |
| AVM72_RS15750 () | 5512..5766 | - | 255 | WP_144420829.1 | hypothetical protein | - |
| AVM72_RS15755 () | 6193..6564 | + | 372 | WP_047927049.1 | hypothetical protein | - |
| AVM72_RS15760 () | 6633..7196 | + | 564 | WP_036816706.1 | DnaJ domain-containing protein | - |
| AVM72_RS15765 () | 7256..8044 | + | 789 | WP_047927050.1 | hypothetical protein | - |
| AVM72_RS15770 () | 8108..8401 | - | 294 | WP_036774899.1 | hypothetical protein | - |
| AVM72_RS15775 () | 8987..9430 | + | 444 | WP_036774901.1 | hypothetical protein | - |
| AVM72_RS15780 () | 9421..9750 | + | 330 | WP_036774904.1 | hypothetical protein | - |
| AVM72_RS15785 () | 9745..15615 | - | 5871 | WP_075275450.1 | Multifunctional conjugation protein TraI | Relaxase |
| AVM72_RS15790 () | 15684..15890 | - | 207 | WP_027242547.1 | hypothetical protein | - |
| AVM72_RS15795 () | 15902..16654 | - | 753 | WP_027242548.1 | DsbA family protein | - |
| AVM72_RS15800 () | 16654..18651 | - | 1998 | WP_052106227.1 | type IV conjugative transfer system coupling protein TraD | - |
| AVM72_RS15805 () | 18662..18982 | - | 321 | WP_027242549.1 | hypothetical protein | - |
| AVM72_RS15810 () | 19021..19764 | - | 744 | WP_027242550.1 | complement resistance protein TraT | - |
| AVM72_RS15815 () | 19847..20164 | + | 318 | WP_027242551.1 | hypothetical protein | - |
| AVM72_RS15820 () | 20181..22970 | - | 2790 | WP_027242552.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| AVM72_RS15825 () | 22972..24354 | - | 1383 | WP_027242553.1 | conjugal transfer protein TraH | - |
| AVM72_RS15830 () | 24347..24838 | - | 492 | WP_027242554.1 | conjugal transfer protein TraF | - |
| AVM72_RS15835 () | 24835..25647 | - | 813 | WP_036773367.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| AVM72_RS15840 () | 25810..26784 | - | 975 | WP_069971648.1 | IS30 family transposase ISPlu1 | Transposase |
| AVM72_RS15845 () | 26843..28648 | - | 1806 | WP_069971679.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| AVM72_RS15850 () | 28654..29319 | - | 666 | WP_036773372.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| AVM72_RS15855 () | 29328..30317 | - | 990 | WP_036773373.1 | conjugal transfer pilus assembly protein TraU | - |
| AVM72_RS15860 () | 30422..31039 | - | 618 | WP_036773375.1 | type-F conjugative transfer system protein TraW | - |
| AVM72_RS15865 () | 31032..31379 | - | 348 | WP_036774457.1 | TrbI F-type domain-containing protein | - |
| AVM72_RS15870 () | 31366..33945 | - | 2580 | WP_036774456.1 | type IV secretion system protein TraC | - |
| AVM72_RS15875 () | 33958..34404 | - | 447 | WP_065653727.1 | type IV conjugative transfer system lipoprotein TraV | - |
| AVM72_RS15880 () | 34407..35876 | - | 1470 | WP_051929537.1 | TraB/VirB10 family protein | - |
| AVM72_RS15885 () | 35886..36590 | - | 705 | WP_051929536.1 | type-F conjugative transfer system secretin TraK | - |
| AVM72_RS15890 () | 36583..37092 | - | 510 | WP_062365791.1 | hypothetical protein | - |
| AVM72_RS19040 () | 37125..38528 | - | 1404 | WP_048876012.1 | IS4 family transposase ISArch10 | Transposase |
| AVM72_RS15900 () | 38709..38999 | - | 291 | WP_036775000.1 | type IV conjugative transfer system protein TraL | - |
| AVM72_RS15905 () | 39015..39332 | - | 318 | WP_052106244.1 | hypothetical protein | - |
| AVM72_RS15910 () | 39530..39784 | - | 255 | WP_144420828.1 | hypothetical protein | - |
| AVM72_RS15915 () | 39990..40268 | - | 279 | WP_036774994.1 | hypothetical protein | - |
| AVM72_RS15920 () | 40347..40703 | + | 357 | WP_047927058.1 | hypothetical protein | - |
| AVM72_RS15925 () | 40823..41608 | + | 786 | WP_053063426.1 | class I SAM-dependent methyltransferase | - |
| AVM72_RS15930 () | 41614..42285 | + | 672 | WP_036775037.1 | HAD family hydrolase | - |
| AVM72_RS15935 () | 42271..43011 | - | 741 | WP_036775038.1 | ester cyclase | - |
| AVM72_RS15940 () | 43306..44601 | - | 1296 | WP_027242605.1 | glutamate-1-semialdehyde 2,1-aminomutase | - |
| AVM72_RS15945 () | 45045..45893 | - | 849 | WP_036774869.1 | ParB/RepB/Spo0J family partition protein | - |
| AVM72_RS15950 () | 45890..46750 | - | 861 | WP_047927060.1 | ParA family protein | - |
| AVM72_RS15955 () | 46740..46949 | - | 210 | WP_047927061.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| AVM72_RS15960 () | 47478..47804 | + | 327 | WP_047927062.1 | hypothetical protein | - |
| AVM72_RS15965 () | 47804..48928 | + | 1125 | WP_047927063.1 | hypothetical protein | - |
| AVM72_RS15970 () | 49476..50321 | + | 846 | Protein_51 | IS982 family transposase | - |
| AVM72_RS19045 () | 51025..52428 | + | 1404 | WP_048876031.1 | IS4 family transposase ISArch10 | Transposase |
| AVM72_RS15985 () | 52456..53046 | - | 591 | WP_027242600.1 | site-specific integrase | - |
| AVM72_RS15990 () | 53319..53579 | + | 261 | WP_032126795.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| AVM72_RS15995 () | 53583..53855 | + | 273 | WP_016211910.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| AVM72_RS16000 () | 54181..54399 | - | 219 | WP_155046644.1 | hypothetical protein | - |
| AVM72_RS16005 () | 54572..54712 | + | 141 | Protein_57 | helix-turn-helix domain-containing protein | - |
| AVM72_RS19050 () | 55429..55575 | - | 147 | WP_157894761.1 | transposase zinc-binding domain-containing protein | - |
| AVM72_RS19055 () | 55739..55879 | + | 141 | Protein_59 | helix-turn-helix domain-containing protein | - |
| AVM72_RS16015 () | 55938..56402 | - | 465 | WP_036774631.1 | hypothetical protein | - |
| AVM72_RS19060 () | 56519..57436 | - | 918 | Protein_61 | IS30 family transposase IS1655 | Transposase |
| AVM72_RS20320 () | 57669..57926 | + | 258 | WP_098082828.1 | IS3 family transposase ISGur10 | Transposase |
| AVM72_RS16030 () | 57926..58933 | + | 1008 | WP_036774189.1 | IS3 family transposase ISGur10 | Transposase |
| AVM72_RS20325 () | 58981..59133 | - | 153 | WP_155046643.1 | IS30 family transposase IS4351 | Transposase |
| AVM72_RS16035 () | 59129..59356 | + | 228 | Protein_65 | transposase | - |
| AVM72_RS16040 () | 59367..59858 | - | 492 | WP_155046642.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|