MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 57431 bp
Accession: NZ_CP013789 Location: 1..57431 Organism: Piscirickettsia salmonis strain PM58386B Replicon: plasmid p3PS7
Accession: NZ_CP013789 Location: 1..57431 Organism: Piscirickettsia salmonis strain PM58386B Replicon: plasmid p3PS7
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVI54_RS17695 () | 129..1046 | - | 918 | Protein_1 | IS30 family transposase IS1655 | Transposase |
| AVI54_RS19840 () | 1279..1536 | + | 258 | WP_098082828.1 | IS3 family transposase ISGur10 | Transposase |
| AVI54_RS17705 () | 1536..2543 | + | 1008 | WP_036774189.1 | IS3 family transposase ISGur10 | Transposase |
| AVI54_RS19845 () | 2591..2743 | - | 153 | WP_155046643.1 | IS30 family transposase IS4351 | Transposase |
| AVI54_RS17710 () | 2739..2966 | + | 228 | Protein_5 | transposase | - |
| AVI54_RS17715 () | 2977..3468 | - | 492 | WP_155046642.1 | hypothetical protein | - |
| AVI54_RS17720 () | 3496..5358 | - | 1863 | WP_027242576.1 | RecX family transcriptional regulator | - |
| AVI54_RS19850 () | 5464..5769 | + | 306 | WP_144420830.1 | WGR domain-containing protein | - |
| AVI54_RS17730 () | 6126..6437 | + | 312 | WP_027242583.1 | type II toxin-antitoxin system HigB family toxin | - |
| AVI54_RS17735 () | 6434..6835 | + | 402 | WP_027242582.1 | helix-turn-helix domain-containing protein | - |
| AVI54_RS17740 () | 6845..9031 | - | 2187 | WP_027242581.1 | ATP-dependent RecD-like DNA helicase | - |
| AVI54_RS17745 () | 9208..9462 | - | 255 | WP_144420829.1 | hypothetical protein | - |
| AVI54_RS17750 () | 9889..10260 | + | 372 | WP_047927049.1 | hypothetical protein | - |
| AVI54_RS17755 () | 10329..10892 | + | 564 | WP_036816706.1 | DnaJ domain-containing protein | - |
| AVI54_RS17760 () | 10952..11740 | + | 789 | WP_047927050.1 | hypothetical protein | - |
| AVI54_RS17765 () | 11804..12097 | - | 294 | WP_036774899.1 | hypothetical protein | - |
| AVI54_RS17770 () | 12683..13126 | + | 444 | WP_036774901.1 | hypothetical protein | - |
| AVI54_RS17775 () | 13117..13446 | + | 330 | WP_036774904.1 | hypothetical protein | - |
| AVI54_RS17780 () | 13441..19311 | - | 5871 | WP_075275450.1 | Multifunctional conjugation protein TraI | Relaxase |
| AVI54_RS17785 () | 19380..19586 | - | 207 | WP_027242547.1 | hypothetical protein | - |
| AVI54_RS17790 () | 19598..20350 | - | 753 | WP_027242548.1 | DsbA family protein | - |
| AVI54_RS17795 () | 20350..22347 | - | 1998 | WP_052106227.1 | type IV conjugative transfer system coupling protein TraD | - |
| AVI54_RS17800 () | 22358..22678 | - | 321 | WP_027242549.1 | hypothetical protein | - |
| AVI54_RS17805 () | 22717..23460 | - | 744 | WP_027242550.1 | complement resistance protein TraT | - |
| AVI54_RS17810 () | 23543..23860 | + | 318 | WP_027242551.1 | hypothetical protein | - |
| AVI54_RS17815 () | 23877..26666 | - | 2790 | WP_027242552.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| AVI54_RS17820 () | 26668..28050 | - | 1383 | WP_027242553.1 | conjugal transfer protein TraH | - |
| AVI54_RS17825 () | 28043..28534 | - | 492 | WP_027242554.1 | conjugal transfer protein TraF | - |
| AVI54_RS17830 () | 28531..29343 | - | 813 | WP_036773367.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| AVI54_RS17835 () | 29340..31238 | - | 1899 | WP_036773369.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| AVI54_RS17840 () | 31244..31909 | - | 666 | WP_036773372.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| AVI54_RS17845 () | 31918..32907 | - | 990 | WP_036773373.1 | conjugal transfer pilus assembly protein TraU | - |
| AVI54_RS17850 () | 33012..33629 | - | 618 | WP_036773375.1 | type-F conjugative transfer system protein TraW | - |
| AVI54_RS17855 () | 33622..33969 | - | 348 | WP_036774457.1 | TrbI F-type domain-containing protein | - |
| AVI54_RS17860 () | 33956..36535 | - | 2580 | WP_036774456.1 | type IV secretion system protein TraC | - |
| AVI54_RS17865 () | 36548..36994 | - | 447 | WP_065653727.1 | type IV conjugative transfer system lipoprotein TraV | - |
| AVI54_RS17870 () | 36997..38466 | - | 1470 | WP_051929537.1 | TraB/VirB10 family protein | - |
| AVI54_RS17875 () | 38476..39180 | - | 705 | WP_051929536.1 | type-F conjugative transfer system secretin TraK | - |
| AVI54_RS17880 () | 39173..39742 | - | 570 | WP_047927056.1 | hypothetical protein | - |
| AVI54_RS17885 () | 39750..40040 | - | 291 | WP_036775000.1 | type IV conjugative transfer system protein TraL | - |
| AVI54_RS17890 () | 40056..40373 | - | 318 | WP_052106244.1 | hypothetical protein | - |
| AVI54_RS17895 () | 40571..40825 | - | 255 | WP_144420828.1 | hypothetical protein | - |
| AVI54_RS17900 () | 41031..41309 | - | 279 | WP_036774994.1 | hypothetical protein | - |
| AVI54_RS17905 () | 41388..41744 | + | 357 | WP_047927058.1 | hypothetical protein | - |
| AVI54_RS17910 () | 41864..42649 | + | 786 | WP_053063426.1 | class I SAM-dependent methyltransferase | - |
| AVI54_RS17915 () | 42655..43326 | + | 672 | WP_036775037.1 | HAD family hydrolase | - |
| AVI54_RS17920 () | 43312..44052 | - | 741 | WP_036775038.1 | ester cyclase | - |
| AVI54_RS17925 () | 44347..45642 | - | 1296 | WP_027242605.1 | glutamate-1-semialdehyde 2,1-aminomutase | - |
| AVI54_RS17930 () | 46086..46934 | - | 849 | WP_036774869.1 | ParB/RepB/Spo0J family partition protein | - |
| AVI54_RS17935 () | 46931..47791 | - | 861 | WP_047927060.1 | ParA family protein | - |
| AVI54_RS17940 () | 47781..47990 | - | 210 | WP_047927061.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| AVI54_RS17945 () | 48519..48845 | + | 327 | WP_047927062.1 | hypothetical protein | - |
| AVI54_RS17950 () | 48845..49969 | + | 1125 | WP_047927063.1 | hypothetical protein | - |
| AVI54_RS18680 () | 50517..51362 | + | 846 | Protein_54 | IS982 family transposase | - |
| AVI54_RS17970 () | 52066..53469 | + | 1404 | WP_048876031.1 | IS4 family transposase ISArch10 | Transposase |
| AVI54_RS17975 () | 53497..54087 | - | 591 | WP_027242600.1 | site-specific integrase | - |
| AVI54_RS17980 () | 54360..54620 | + | 261 | WP_032126795.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| AVI54_RS17985 () | 54624..54896 | + | 273 | WP_016211910.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| AVI54_RS17990 () | 55222..55440 | - | 219 | WP_155046644.1 | hypothetical protein | - |
| AVI54_RS17995 () | 55613..55753 | + | 141 | Protein_60 | helix-turn-helix domain-containing protein | - |
| AVI54_RS18000 () | 56470..56616 | - | 147 | WP_157894761.1 | transposase zinc-binding domain-containing protein | - |
| AVI54_RS18005 () | 56780..56920 | + | 141 | Protein_62 | helix-turn-helix domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|