MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 57419 bp
Accession: NZ_CP013784 Location: 1..57419 Organism: Piscirickettsia salmonis strain PM49811B Replicon: plasmid p3PS6
Accession: NZ_CP013784 Location: 1..57419 Organism: Piscirickettsia salmonis strain PM49811B Replicon: plasmid p3PS6
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVI53_RS20600 () | 127..948 | - | 822 | Protein_1 | IS30 family transposase | - |
| AVI53_RS19920 () | 1271..1528 | + | 258 | WP_098082828.1 | IS3 family transposase ISGur10 | Transposase |
| AVI53_RS17740 () | 1596..2534 | + | 939 | WP_052047040.1 | IS3 family transposase ISGur10 | Transposase |
| AVI53_RS19925 () | 2582..2734 | - | 153 | WP_155046643.1 | IS30 family transposase IS4351 | Transposase |
| AVI53_RS17745 () | 2730..2900 | + | 171 | Protein_5 | transposase | - |
| AVI53_RS17750 () | 2967..3458 | - | 492 | WP_155046642.1 | hypothetical protein | - |
| AVI53_RS17755 () | 3486..5348 | - | 1863 | WP_027242576.1 | RecX family transcriptional regulator | - |
| AVI53_RS19930 () | 5445..5759 | + | 315 | WP_036774182.1 | WGR domain-containing protein | - |
| AVI53_RS17765 () | 6116..6427 | + | 312 | WP_027242583.1 | type II toxin-antitoxin system HigB family toxin | - |
| AVI53_RS17770 () | 6424..6825 | + | 402 | WP_027242582.1 | helix-turn-helix domain-containing protein | - |
| AVI53_RS17775 () | 6835..9021 | - | 2187 | WP_027242581.1 | ATP-dependent RecD-like DNA helicase | - |
| AVI53_RS17780 () | 9198..9452 | - | 255 | WP_144420829.1 | hypothetical protein | - |
| AVI53_RS17785 () | 9879..10250 | + | 372 | WP_047927049.1 | hypothetical protein | - |
| AVI53_RS17790 () | 10319..10882 | + | 564 | WP_036816706.1 | DnaJ domain-containing protein | - |
| AVI53_RS17795 () | 11091..11729 | + | 639 | WP_062312236.1 | hypothetical protein | - |
| AVI53_RS17800 () | 11793..12086 | - | 294 | WP_036774899.1 | hypothetical protein | - |
| AVI53_RS17805 () | 12672..13115 | + | 444 | WP_036774901.1 | hypothetical protein | - |
| AVI53_RS17810 () | 13106..13435 | + | 330 | WP_036774904.1 | hypothetical protein | - |
| AVI53_RS17815 () | 13430..19300 | - | 5871 | WP_075275450.1 | Multifunctional conjugation protein TraI | Relaxase |
| AVI53_RS17820 () | 19586..20338 | - | 753 | WP_027242548.1 | DsbA family protein | - |
| AVI53_RS17825 () | 20338..22335 | - | 1998 | WP_052106227.1 | type IV conjugative transfer system coupling protein TraD | - |
| AVI53_RS17830 () | 22346..22666 | - | 321 | WP_027242549.1 | hypothetical protein | - |
| AVI53_RS17835 () | 22705..23448 | - | 744 | WP_027242550.1 | complement resistance protein TraT | - |
| AVI53_RS17840 () | 23531..23848 | + | 318 | WP_027242551.1 | hypothetical protein | - |
| AVI53_RS17845 () | 23865..26654 | - | 2790 | WP_027242552.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| AVI53_RS17850 () | 26656..28038 | - | 1383 | WP_027242553.1 | conjugal transfer protein TraH | - |
| AVI53_RS17855 () | 28031..28522 | - | 492 | WP_027242554.1 | conjugal transfer protein TraF | - |
| AVI53_RS17860 () | 28519..29331 | - | 813 | WP_036773367.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| AVI53_RS17865 () | 29328..31226 | - | 1899 | WP_036773369.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| AVI53_RS17870 () | 31232..31897 | - | 666 | WP_036773372.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| AVI53_RS17875 () | 31906..32895 | - | 990 | WP_036773373.1 | conjugal transfer pilus assembly protein TraU | - |
| AVI53_RS17880 () | 33000..33617 | - | 618 | WP_036773375.1 | type-F conjugative transfer system protein TraW | - |
| AVI53_RS17885 () | 33610..33957 | - | 348 | WP_036774457.1 | TrbI F-type domain-containing protein | - |
| AVI53_RS17890 () | 33944..36523 | - | 2580 | WP_036774456.1 | type IV secretion system protein TraC | - |
| AVI53_RS17895 () | 36536..36982 | - | 447 | WP_065653727.1 | type IV conjugative transfer system lipoprotein TraV | - |
| AVI53_RS17900 () | 36985..38454 | - | 1470 | WP_051929537.1 | TraB/VirB10 family protein | - |
| AVI53_RS17905 () | 38464..39168 | - | 705 | WP_051929536.1 | type-F conjugative transfer system secretin TraK | - |
| AVI53_RS17910 () | 39161..39730 | - | 570 | WP_047927056.1 | hypothetical protein | - |
| AVI53_RS17915 () | 39738..40028 | - | 291 | WP_036775000.1 | type IV conjugative transfer system protein TraL | - |
| AVI53_RS17920 () | 40044..40361 | - | 318 | WP_052106244.1 | hypothetical protein | - |
| AVI53_RS17925 () | 40559..40813 | - | 255 | WP_144420828.1 | hypothetical protein | - |
| AVI53_RS17930 () | 41019..41297 | - | 279 | WP_036774994.1 | hypothetical protein | - |
| AVI53_RS17935 () | 41376..41732 | + | 357 | WP_047927058.1 | hypothetical protein | - |
| AVI53_RS17940 () | 41852..42637 | + | 786 | WP_053063426.1 | class I SAM-dependent methyltransferase | - |
| AVI53_RS17945 () | 42643..43314 | + | 672 | WP_036775037.1 | HAD family hydrolase | - |
| AVI53_RS17950 () | 43300..44040 | - | 741 | WP_036775038.1 | ester cyclase | - |
| AVI53_RS17955 () | 44335..45630 | - | 1296 | WP_027242605.1 | glutamate-1-semialdehyde 2,1-aminomutase | - |
| AVI53_RS17960 () | 46074..46922 | - | 849 | WP_036774869.1 | ParB/RepB/Spo0J family partition protein | - |
| AVI53_RS17965 () | 46919..47779 | - | 861 | WP_047927060.1 | ParA family protein | - |
| AVI53_RS17970 () | 47769..47978 | - | 210 | WP_047927061.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| AVI53_RS17975 () | 48507..48833 | + | 327 | WP_047927062.1 | hypothetical protein | - |
| AVI53_RS17980 () | 48833..49957 | + | 1125 | WP_047927063.1 | hypothetical protein | - |
| AVI53_RS18715 () | 50505..51350 | + | 846 | Protein_53 | IS982 family transposase | - |
| AVI53_RS18000 () | 52054..53457 | + | 1404 | WP_048876031.1 | IS4 family transposase ISArch10 | Transposase |
| AVI53_RS18005 () | 53485..54075 | - | 591 | WP_027242600.1 | site-specific integrase | - |
| AVI53_RS18010 () | 54348..54608 | + | 261 | WP_032126795.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| AVI53_RS18015 () | 54612..54884 | + | 273 | WP_016211910.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| AVI53_RS18020 () | 55210..55428 | - | 219 | WP_155046644.1 | hypothetical protein | - |
| AVI53_RS18025 () | 55601..55741 | + | 141 | Protein_59 | helix-turn-helix domain-containing protein | - |
| AVI53_RS18030 () | 56458..56604 | - | 147 | WP_157894761.1 | transposase zinc-binding domain-containing protein | - |
| AVI53_RS18035 () | 56768..56908 | + | 141 | Protein_61 | helix-turn-helix domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|