MGE detailed information
MGE type: Mobilizable plasmid MGE length: 88284 bp
Accession: NZ_CP013005 Location: 1..88284 Organism: Xanthomonas citri pv. malvacearum strain XcmH1005 Replicon: plasmid pXcmH
Accession: NZ_CP013005 Location: 1..88284 Organism: Xanthomonas citri pv. malvacearum strain XcmH1005 Replicon: plasmid pXcmH
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APY29_RS23365 () | 369..788 | - | 420 | Protein_1 | hypothetical protein | - |
| APY29_RS23375 () | 1961..3337 | - | 1377 | WP_078565984.1 | IS5 family transposase ISXca5 | Transposase |
| APY29_RS23385 () | 4060..5286 | - | 1227 | WP_089504549.1 | replication protein | - |
| APY29_RS23390 () | 5566..6753 | - | 1188 | WP_078566343.1 | zeta toxin family protein | - |
| APY29_RS23395 () | 6760..7023 | - | 264 | WP_005917846.1 | hypothetical protein | - |
| APY29_RS23400 () | 7048..7449 | - | 402 | WP_011053002.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| APY29_RS23405 () | 7446..7706 | - | 261 | WP_005917852.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| APY29_RS23415 () | 8056..11649 | + | 3594 | WP_089504550.1 | TAL effector repeat-containing protein | - |
| APY29_RS23430 () | 12430..15516 | + | 3087 | WP_089504551.1 | TAL effector repeat-containing protein | - |
| APY29_RS23435 () | 15627..16058 | + | 432 | Protein_11 | avirulence protein | - |
| APY29_RS23440 () | 16149..17426 | - | 1278 | WP_005918469.1 | lytic murein transglycosylase | - |
| APY29_RS23445 () | 17559..19118 | - | 1560 | Protein_13 | Tn3 family transposase TnpA_TnXax1 | Transposase |
| APY29_RS23450 () | 19288..19829 | + | 542 | Protein_14 | IS3 family transposase ISXac2 | Transposase |
| APY29_RS23455 () | 19870..20793 | - | 924 | WP_005934469.1 | Tn3 family transposase TnpR_ISXc4 | Transposase |
| APY29_RS23460 () | 21001..21240 | + | 240 | WP_005934467.1 | ribbon-helix-helix domain-containing protein | - |
| APY29_RS23465 () | 21240..21659 | + | 420 | WP_005934465.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| APY29_RS23470 () | 21664..24639 | + | 2976 | WP_033836402.1 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| APY29_RS23475 () | 24658..25356 | + | 699 | WP_033836401.1 | UPF0149 family protein | - |
| APY29_RS23480 () | 25401..25583 | + | 183 | Protein_20 | transposase | - |
| APY29_RS25060 () | 25910..26047 | - | 138 | WP_005918231.1 | hypothetical protein | - |
| APY29_RS23490 () | 26216..26842 | + | 627 | WP_005918230.1 | Chromosome-partitioning ATPase Soj | VF |
| APY29_RS23495 () | 26839..27162 | + | 324 | WP_005918229.1 | hypothetical protein | - |
| APY29_RS23500 () | 27307..27621 | + | 315 | WP_005918227.1 | hypothetical protein | - |
| APY29_RS23505 () | 27869..29116 | + | 1248 | WP_078566285.1 | replication initiation protein | - |
| APY29_RS23515 () | 30706..31931 | + | 1226 | WP_087959283.1 | IS3 family transposase ISJsp1 | Transposase |
| APY29_RS23520 () | 31898..32431 | + | 534 | WP_089504552.1 | TAL effector repeat-containing protein | - |
| APY29_RS23530 () | 32633..36637 | + | 4005 | WP_089504553.1 | TAL effector repeat-containing protein | - |
| APY29_RS23535 () | 36763..36948 | + | 186 | WP_033837725.1 | hypothetical protein | - |
| APY29_RS23540 () | 37102..37731 | + | 630 | WP_005918369.1 | AAA family ATPase | - |
| APY29_RS23545 () | 37744..37959 | + | 216 | WP_005918372.1 | chromosome partitioning protein ParB | - |
| APY29_RS23550 () | 37976..38782 | + | 807 | WP_005918374.1 | hypothetical protein | - |
| APY29_RS23555 () | 38798..39004 | + | 207 | WP_078566330.1 | antitoxin VbhA family protein | - |
| APY29_RS23560 () | 39052..39663 | - | 612 | WP_089504554.1 | Tn3 family transposase ISPsy42 | Transposase |
| APY29_RS23565 () | 39817..43617 | + | 3801 | WP_089504555.1 | TAL effector repeat-containing protein | - |
| APY29_RS23575 () | 45033..45854 | - | 822 | WP_080575193.1 | hypothetical protein | - |
| APY29_RS23580 () | 46365..46754 | - | 390 | WP_003490639.1 | hypothetical protein | - |
| APY29_RS23585 () | 46963..47637 | + | 675 | WP_017113468.1 | NYN domain-containing protein | - |
| APY29_RS23590 () | 47690..48229 | - | 540 | WP_078565982.1 | plasmid pRiA4b ORF-3 family protein | - |
| APY29_RS23595 () | 48277..48558 | - | 282 | Protein_42 | hypothetical protein | - |
| APY29_RS23605 () | 49863..50072 | - | 210 | Protein_44 | hypothetical protein | - |
| APY29_RS24775 () | 50289..50762 | + | 474 | Protein_45 | Avirulence protein AvrBs3 | - |
| APY29_RS23610 () | 50873..54367 | - | 3495 | WP_089504556.1 | TAL effector repeat-containing protein | - |
| APY29_RS23620 () | 54911..55732 | + | 822 | WP_078565902.1 | hypothetical protein | - |
| APY29_RS25065 () | 56456..56752 | + | 297 | WP_157733730.1 | hypothetical protein | - |
| APY29_RS23630 () | 56805..57437 | - | 633 | WP_078565906.1 | ParA family protein | - |
| APY29_RS23645 () | 58262..58891 | + | 630 | WP_078565908.1 | AAA family ATPase | - |
| APY29_RS23650 () | 58888..59124 | + | 237 | WP_078565910.1 | hypothetical protein | - |
| APY29_RS23655 () | 59531..59884 | - | 354 | WP_039447645.1 | hypothetical protein | - |
| APY29_RS23660 () | 59933..60640 | - | 708 | WP_005931741.1 | hypothetical protein | - |
| APY29_RS23665 () | 60637..61083 | - | 447 | WP_033480397.1 | hypothetical protein | - |
| APY29_RS23670 () | 61433..61828 | + | 396 | WP_005931747.1 | hypothetical protein | - |
| APY29_RS23675 () | 61924..62193 | + | 270 | WP_003490597.1 | hypothetical protein | - |
| APY29_RS23680 () | 62190..62483 | + | 294 | WP_005931751.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| APY29_RS23685 () | 62736..63362 | - | 627 | Protein_58 | IS3 family transposase ISXac2 | Transposase |
| APY29_RS23695 () | 64628..64828 | + | 201 | Protein_60 | IS3 family transposase IS1389-B | Transposase |
| APY29_RS23700 () | 64890..66046 | + | 1157 | WP_089504557.1 | IS3 family transposase ISXc8 | Transposase |
| APY29_RS23705 () | 66226..69822 | - | 3597 | WP_089504558.1 | TAL effector repeat-containing protein | - |
| APY29_RS23715 () | 71352..71972 | + | 621 | WP_089504562.1 | hypothetical protein | - |
| APY29_RS23720 () | 72171..72512 | + | 342 | WP_078566025.1 | hypothetical protein | - |
| APY29_RS23725 () | 72653..74227 | + | 1575 | WP_089504560.1 | type IV secretion system DNA-binding domain-containing protein | - |
| APY29_RS23730 () | 74241..77225 | + | 2985 | WP_089504561.1 | Multifunctional conjugation protein TraI | Relaxase |
| APY29_RS23735 () | 77515..77799 | + | 285 | WP_003490829.1 | hypothetical protein | - |
| APY29_RS23740 () | 77985..78398 | - | 414 | Protein_69 | hypothetical protein | - |
| APY29_RS23750 () | 79889..80125 | - | 237 | WP_015463816.1 | hypothetical protein | - |
| APY29_RS23755 () | 80122..80751 | - | 630 | WP_039583105.1 | AAA family ATPase | - |
| APY29_RS23760 () | 80871..81551 | - | 681 | WP_078565925.1 | DNA-binding protein | - |
| APY29_RS23765 () | 81603..82690 | + | 1088 | WP_089504397.1 | IS3 family transposase ISXac2 | Transposase |
| APY29_RS23775 () | 83087..84142 | - | 1056 | WP_033836455.1 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| APY29_RS23780 () | 84326..85600 | + | 1275 | WP_005923972.1 | Tn3 family transposase tnpS_TnXax1 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|