MGE detailed information
MGE type: Prophage MGE length: 52367 bp
Accession: NZ_CP013004 Location: 2723768..2776134 Organism: Xanthomonas citri pv. malvacearum strain XcmH1005 Replicon: chromosome
Accession: NZ_CP013004 Location: 2723768..2776134 Organism: Xanthomonas citri pv. malvacearum strain XcmH1005 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APY29_RS12150 () | 2718876..2719151 | + | 276 | WP_005916089.1 | hypothetical protein | - |
| APY29_RS12155 () | 2719188..2720180 | - | 993 | WP_005916091.1 | exodeoxyribonuclease III | - |
| APY29_RS24930 () | 2720179..2720331 | + | 153 | WP_016848755.1 | hypothetical protein | - |
| APY29_RS12160 () | 2720328..2720564 | + | 237 | Protein_2256 | DUF1264 domain-containing protein | - |
| APY29_RS12165 () | 2720814..2723696 | + | 2883 | WP_089504468.1 | TAL effector repeat-containing protein | - |
| APY29_RS12170 () | 2723768..2724697 | - | 930 | Protein_2258 | IS3 family transposase ISXac3 | Transposase |
| APY29_RS12175 () | 2724763..2725937 | + | 1175 | Protein_2259 | IS3 family transposase ISJsp1 | Transposase |
| APY29_RS24265 () | 2727288..2727404 | - | 117 | Protein_2261 | IS1595 family transposase IS1595 | Transposase |
| APY29_RS24935 () | 2727795..2730299 | + | 2505 | WP_005918046.1 | HAD hydrolase-like protein | - |
| APY29_RS12195 () | 2730735..2731811 | - | 1077 | WP_089504534.1 | avirulence protein | - |
| APY29_RS12200 () | 2731945..2732241 | - | 297 | Protein_2264 | integrase | - |
| APY29_RS12205 () | 2732298..2732612 | + | 315 | WP_033836454.1 | IS3 family transposase ISKpn40 | Transposase |
| APY29_RS12210 () | 2732609..2733430 | + | 822 | WP_033837060.1 | IS3 family transposase ISKpn40 | Transposase |
| APY29_RS12215 () | 2733458..2733869 | - | 412 | Protein_2267 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| APY29_RS12220 () | 2734053..2734853 | - | 801 | WP_017154874.1 | IS21 family transposase ISRme20 | Transposase |
| APY29_RS12225 () | 2734853..2735893 | - | 1041 | WP_033474620.1 | IS21 family transposase ISRme20 | Transposase |
| APY29_RS12230 () | 2736012..2736314 | + | 303 | WP_005923977.1 | IS66 family transposase ISDpr4 | Transposase |
| APY29_RS12235 () | 2736308..2736580 | + | 273 | WP_005918020.1 | IS66 family transposase ISAzo15 | Transposase |
| APY29_RS24275 () | 2736769..2736969 | + | 201 | WP_005934416.1 | IS66 family transposase ISAzo15 | Transposase |
| APY29_RS12240 () | 2737090..2737641 | - | 552 | WP_078514874.1 | type III effector | - |
| APY29_RS12245 () | 2738065..2739120 | - | 1056 | WP_033836455.1 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| APY29_RS12250 () | 2739304..2740578 | + | 1275 | WP_005923972.1 | Tn3 family transposase tnpS_TnXax1 | Transposase |
| APY29_RS12255 () | 2740587..2743583 | + | 2997 | WP_078566280.1 | Tn3 family transposase TnpA_TnXax1 | Transposase |
| APY29_RS12260 () | 2743631..2744050 | - | 420 | Protein_2277 | hypothetical protein | - |
| APY29_RS12270 () | 2745203..2745445 | - | 243 | Protein_2279 | replication protein | - |
| APY29_RS12275 () | 2745725..2746912 | - | 1188 | WP_078566343.1 | zeta toxin family protein | - |
| APY29_RS12280 () | 2746919..2747182 | - | 264 | WP_005917846.1 | hypothetical protein | - |
| APY29_RS12285 () | 2747207..2747608 | - | 402 | WP_011053002.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| APY29_RS12290 () | 2747605..2747865 | - | 261 | WP_005917852.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| APY29_RS12300 () | 2748215..2751499 | + | 3285 | WP_089504471.1 | TAL effector repeat-containing protein | - |
| APY29_RS12305 () | 2751684..2752535 | - | 852 | WP_033837071.1 | putative addiction module antidote protein | - |
| APY29_RS12310 () | 2752535..2753122 | - | 588 | WP_033836498.1 | ComF family protein | - |
| APY29_RS12315 () | 2753361..2754011 | + | 651 | WP_033837724.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| APY29_RS12320 () | 2754281..2755150 | + | 870 | WP_033836500.1 | site-specific DNA-methyltransferase | - |
| APY29_RS12325 () | 2755147..2756148 | + | 1002 | WP_033836501.1 | XcyI family restriction endonuclease | - |
| APY29_RS24940 () | 2756643..2756987 | + | 345 | WP_033836502.1 | AAA family ATPase | - |
| APY29_RS12340 () | 2758169..2760037 | + | 1869 | WP_078566048.1 | AAA family ATPase | - |
| APY29_RS12355 () | 2761126..2761583 | + | 458 | Protein_2293 | hypothetical protein | - |
| APY29_RS12360 () | 2761580..2762443 | + | 864 | WP_033836504.1 | hypothetical protein | - |
| APY29_RS24945 () | 2762706..2763029 | + | 324 | WP_180324701.1 | hypothetical protein | - |
| APY29_RS12385 () | 2764036..2765268 | + | 1233 | WP_033480615.1 | DNA cytosine methyltransferase | - |
| APY29_RS12390 () | 2765268..2766170 | + | 903 | WP_033455135.1 | hypothetical protein | - |
| APY29_RS12395 () | 2766187..2766378 | - | 192 | WP_005918028.1 | antitoxin VbhA family protein | - |
| APY29_RS24950 () | 2766391..2766567 | - | 177 | WP_154138535.1 | hypothetical protein | - |
| APY29_RS12405 () | 2767120..2767671 | + | 552 | WP_078514874.1 | type III effector | - |
| APY29_RS24290 () | 2767792..2767992 | - | 201 | WP_005934416.1 | IS66 family transposase ISAzo15 | Transposase |
| APY29_RS12410 () | 2768181..2768453 | - | 273 | WP_005918020.1 | IS66 family transposase ISDpr4 | Transposase |
| APY29_RS12420 () | 2769047..2769615 | + | 569 | Protein_2303 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| APY29_RS12425 () | 2769749..2770825 | + | 1077 | WP_089504535.1 | avirulence protein | - |
| APY29_RS12430 () | 2771121..2771657 | + | 537 | Protein_2305 | DUF1264 domain-containing protein | - |
| APY29_RS12435 () | 2771852..2773021 | - | 1170 | WP_005914488.1 | glutathione-dependent formaldehyde dehydrogenase | - |
| APY29_RS12440 () | 2773035..2773565 | - | 531 | WP_005914487.1 | hypothetical protein | - |
| APY29_RS12445 () | 2773569..2774141 | - | 573 | WP_005914486.1 | DUF4142 domain-containing protein | - |
| APY29_RS12450 () | 2774521..2774736 | - | 216 | WP_003482865.1 | hypothetical protein | - |
| APY29_RS12455 () | 2774819..2775277 | - | 459 | Protein_2310 | TonB-dependent receptor | - |
| APY29_RS12465 () | 2776462..2778681 | - | 2220 | Protein_2312 | TonB-dependent receptor | - |
| APY29_RS12475 () | 2778865..2780070 | + | 1206 | WP_190276415.1 | molybdopterin-synthase adenylyltransferase MoeB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|