MGE detailed information
MGE type: Prophage MGE length: 50179 bp
Accession: NZ_CP012547 Location: 863364..913542 Organism: Campylobacter pinnipediorum subsp. pinnipediorum strain RM17261 Replicon: chromosome
Accession: NZ_CP012547 Location: 863364..913542 Organism: Campylobacter pinnipediorum subsp. pinnipediorum strain RM17261 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPIN17261_RS04235 () | 858869..859633 | + | 765 | WP_194284735.1 | M48 family metallopeptidase | - |
| CPIN17261_RS04240 () | 859651..859920 | + | 270 | WP_069632063.1 | NifU family protein | - |
| CPIN17261_RS04245 () | 859913..860458 | + | 546 | WP_078387677.1 | histidine kinase | - |
| CPIN17261_RS04250 () | 860442..861725 | + | 1284 | WP_078387678.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase | - |
| CPIN17261_RS04255 () | 861727..862077 | + | 351 | WP_069632060.1 | aspartate 1-decarboxylase | - |
| CPIN17261_RS04260 () | 862077..862685 | + | 609 | WP_069637169.1 | riboflavin synthase | - |
| CPIN17261_RS04265 () | 862649..863359 | + | 711 | WP_078387679.1 | peptidoglycan editing factor PgeF | - |
| CPIN17261_RS04270 () | 863364..863579 | + | 216 | WP_069632057.1 | hypothetical protein | - |
| CPIN17261_RS04275 () | 863890..864645 | - | 756 | WP_078387680.1 | DNA adenine methylase | - |
| CPIN17261_RS08915 () | 865015..865167 | - | 153 | WP_153300934.1 | hypothetical protein | - |
| CPIN17261_RS04280 () | 865498..866565 | - | 1068 | WP_069632055.1 | peptide chain release factor 1 | - |
| CPIN17261_RS04285 () | 866573..866842 | - | 270 | WP_069632054.1 | 30S ribosomal protein S20 | - |
| CPIN17261_RS04295 () | 867308..868495 | + | 1188 | Protein_826 | Prophage integrase IntA ; Integrase | Integrase |
| CPIN17261_RS04300 () | 868462..868644 | - | 183 | WP_078387681.1 | helix-turn-helix domain-containing protein | - |
| CPIN17261_RS04305 () | 868649..868858 | - | 210 | WP_078387682.1 | hypothetical protein | - |
| CPIN17261_RS04310 () | 868971..869225 | - | 255 | WP_078387683.1 | hypothetical protein | - |
| CPIN17261_RS04315 () | 869234..870109 | - | 876 | WP_078387684.1 | DNA (cytosine-5-)-methyltransferase | - |
| CPIN17261_RS04320 () | 870106..870321 | - | 216 | WP_078387685.1 | DUF3310 domain-containing protein | - |
| CPIN17261_RS04325 () | 870324..871715 | - | 1392 | WP_078387686.1 | DEAD/DEAH box helicase | - |
| CPIN17261_RS04330 () | 871726..872652 | - | 927 | WP_078387687.1 | DNA methylase | - |
| CPIN17261_RS04335 () | 872657..872995 | - | 339 | WP_078387688.1 | single-stranded DNA-binding protein | - |
| CPIN17261_RS04340 () | 872998..873495 | - | 498 | WP_078387689.1 | hypothetical protein | - |
| CPIN17261_RS08920 () | 873492..873638 | - | 147 | WP_153300935.1 | hypothetical protein | - |
| CPIN17261_RS04345 () | 873650..874546 | - | 897 | WP_078387690.1 | hypothetical protein | - |
| CPIN17261_RS04350 () | 874543..874752 | - | 210 | WP_078387691.1 | hypothetical protein | - |
| CPIN17261_RS04355 () | 874739..875050 | - | 312 | WP_078387692.1 | hypothetical protein | - |
| CPIN17261_RS04360 () | 875068..875256 | - | 189 | WP_078387693.1 | hypothetical protein | - |
| CPIN17261_RS04365 () | 875385..875666 | - | 282 | WP_078387694.1 | hypothetical protein | - |
| CPIN17261_RS04370 () | 876058..876222 | - | 165 | WP_153300936.1 | hypothetical protein | - |
| CPIN17261_RS04375 () | 876287..876550 | - | 264 | WP_078387696.1 | hypothetical protein | - |
| CPIN17261_RS04380 () | 876560..876745 | - | 186 | WP_078387697.1 | hypothetical protein | - |
| CPIN17261_RS04385 () | 876860..877201 | + | 342 | WP_078387698.1 | hypothetical protein | - |
| CPIN17261_RS04390 () | 877203..877508 | + | 306 | WP_194284709.1 | hypothetical protein | - |
| CPIN17261_RS04395 () | 877546..878748 | + | 1203 | WP_078387700.1 | hypothetical protein | - |
| CPIN17261_RS04400 () | 878738..878923 | + | 186 | WP_078387701.1 | hypothetical protein | - |
| CPIN17261_RS04405 () | 878913..879443 | + | 531 | WP_078387702.1 | hypothetical protein | - |
| CPIN17261_RS04410 () | 879454..879678 | + | 225 | WP_078387703.1 | hypothetical protein | - |
| CPIN17261_RS04415 () | 879669..881372 | + | 1704 | WP_078387704.1 | AAA family ATPase | - |
| CPIN17261_RS04420 () | 881460..881669 | - | 210 | WP_078387705.1 | hypothetical protein | - |
| CPIN17261_RS04425 () | 881777..882076 | + | 300 | WP_078387706.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CPIN17261_RS04430 () | 882069..882353 | + | 285 | WP_078387707.1 | putative addiction module antidote protein | Antitoxin Detail |
| CPIN17261_RS04435 () | 882356..883357 | - | 1002 | WP_153300937.1 | hypothetical protein | - |
| CPIN17261_RS04445 () | 883700..884782 | - | 1083 | WP_078387710.1 | phage tail tape measure protein | - |
| CPIN17261_RS04450 () | 884859..885041 | + | 183 | WP_078387711.1 | hypothetical protein | - |
| CPIN17261_RS04455 () | 885146..885409 | - | 264 | WP_078387712.1 | hypothetical protein | - |
| CPIN17261_RS04460 () | 885480..885974 | - | 495 | WP_078387713.1 | phage major tail tube protein | - |
| CPIN17261_RS04465 () | 885979..886227 | - | 249 | WP_078387714.1 | hypothetical protein | - |
| CPIN17261_RS04470 () | 886230..886466 | - | 237 | WP_078387715.1 | hypothetical protein | - |
| CPIN17261_RS04475 () | 886469..887579 | - | 1111 | Protein_862 | phage tail protein | - |
| CPIN17261_RS04480 () | 888003..888320 | - | 318 | WP_078387716.1 | hypothetical protein | - |
| CPIN17261_RS04485 () | 888313..888528 | - | 216 | WP_078388205.1 | hypothetical protein | - |
| CPIN17261_RS04490 () | 888573..888908 | - | 336 | WP_078387717.1 | hypothetical protein | - |
| CPIN17261_RS04495 () | 888905..889273 | - | 369 | WP_078387718.1 | DUF1353 domain-containing protein | - |
| CPIN17261_RS04500 () | 889276..889887 | - | 612 | WP_078387719.1 | hypothetical protein | - |
| CPIN17261_RS04505 () | 889903..890529 | - | 627 | WP_078387720.1 | phage tail protein | - |
| CPIN17261_RS04510 () | 890751..891425 | - | 675 | WP_078387721.1 | phage tail protein | - |
| CPIN17261_RS04515 () | 891422..891898 | - | 477 | WP_078387722.1 | phage tail protein | - |
| CPIN17261_RS04520 () | 892013..893068 | - | 1056 | WP_078387723.1 | baseplate J/gp47 family protein | - |
| CPIN17261_RS04525 () | 893065..893355 | - | 291 | WP_157887335.1 | GPW/gp25 family protein | - |
| CPIN17261_RS04530 () | 893425..893922 | - | 498 | WP_078387725.1 | phage baseplate assembly protein V | - |
| CPIN17261_RS04535 () | 893924..894370 | - | 447 | WP_078387726.1 | hypothetical protein | - |
| CPIN17261_RS04540 () | 894373..894669 | - | 297 | WP_078387727.1 | hypothetical protein | - |
| CPIN17261_RS04545 () | 894675..894902 | - | 228 | WP_078387728.1 | hypothetical protein | - |
| CPIN17261_RS04550 () | 894923..896674 | - | 1752 | WP_078387729.1 | phage major capsid protein | - |
| CPIN17261_RS04555 () | 896787..897683 | + | 897 | WP_078387730.1 | type II restriction endonuclease | - |
| CPIN17261_RS04560 () | 897673..898623 | + | 951 | WP_078387731.1 | DNA cytosine methyltransferase | - |
| CPIN17261_RS04565 () | 898638..900065 | - | 1428 | WP_078387732.1 | phage portal protein | - |
| CPIN17261_RS04570 () | 900065..900292 | - | 228 | WP_078387733.1 | hypothetical protein | - |
| CPIN17261_RS04575 () | 900358..900798 | - | 441 | WP_078387734.1 | hypothetical protein | - |
| CPIN17261_RS04580 () | 900795..901051 | - | 257 | Protein_883 | gag protein | - |
| CPIN17261_RS04585 () | 901051..902760 | - | 1710 | WP_078387735.1 | phage terminase large subunit family protein | - |
| CPIN17261_RS04590 () | 903342..903713 | + | 372 | WP_078387736.1 | hypothetical protein | - |
| CPIN17261_RS04595 () | 903706..904167 | + | 462 | WP_078387737.1 | hypothetical protein | - |
| CPIN17261_RS04600 () | 904253..904456 | + | 204 | WP_078387738.1 | tail protein X | - |
| CPIN17261_RS04605 () | 904447..905367 | + | 921 | WP_078387739.1 | phage tail protein | - |
| CPIN17261_RS04610 () | 905657..907294 | + | 1638 | WP_078387740.1 | lactate permease LctP family transporter | - |
| CPIN17261_RS04615 () | 907400..908303 | - | 904 | Protein_890 | TAXI family TRAP transporter solute-binding subunit | - |
| CPIN17261_RS04620 () | 908409..909281 | - | 873 | WP_078387741.1 | carbon-nitrogen hydrolase | - |
| CPIN17261_RS04625 () | 909299..910165 | - | 867 | WP_078387742.1 | cation diffusion facilitator family transporter | - |
| CPIN17261_RS04630 () | 910165..911133 | - | 969 | WP_194284736.1 | agmatine deiminase family protein | - |
| CPIN17261_RS04635 () | 911136..911384 | - | 249 | WP_069632050.1 | hypothetical protein | - |
| CPIN17261_RS04640 () | 911494..912141 | + | 648 | WP_078387744.1 | amino acid ABC transporter permease | - |
| CPIN17261_RS04645 () | 912131..912796 | + | 666 | WP_069632048.1 | amino acid ABC transporter permease | - |
| CPIN17261_RS04650 () | 912805..913542 | + | 738 | WP_069632047.1 | Glutamine transport ATP-binding protein GlnQ | VF |
| CPIN17261_RS04655 () | 913604..914437 | + | 834 | WP_078387745.1 | cysteine ABC transporter substrate-binding protein | - |
| CPIN17261_RS04660 () | 914480..915598 | - | 1119 | WP_069632045.1 | cell division protein FtsZ | - |
| CPIN17261_RS04665 () | 915645..917075 | - | 1431 | WP_086936809.1 | cell division protein FtsA | - |
| CPIN17261_RS04670 () | 917081..918541 | - | 1461 | WP_069636753.1 | peptidylprolyl isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|