MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 74423 bp
Accession: NZ_CP011973 Location: 1..74423 Organism: Pseudomonas syringae pv. actinidiae ICMP 18884 Replicon: plasmid unnamed
Accession: NZ_CP011973 Location: 1..74423 Organism: Pseudomonas syringae pv. actinidiae ICMP 18884 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IYO_RS29365 () | 231..479 | + | 249 | WP_017685122.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| IYO_RS29370 () | 495..845 | + | 351 | WP_017685123.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| IYO_RS32890 () | 977..1561 | - | 585 | Protein_2 | Oxygen regulatory protein NreC | VF |
| IYO_RS29395 () | 3268..3573 | + | 306 | WP_017706770.1 | hypothetical protein | VF |
| IYO_RS29400 () | 3563..4372 | + | 810 | WP_017684942.1 | P-type conjugative transfer protein VirB9 | - |
| IYO_RS29405 () | 4359..5729 | + | 1371 | WP_017684943.1 | Type IV secretion system protein virB10 | VF |
| IYO_RS29410 () | 5739..6770 | + | 1032 | WP_017684944.1 | Type IV secretion system protein VirB11 | VF |
| IYO_RS29415 () | 6780..7136 | + | 357 | WP_017684945.1 | hypothetical protein | - |
| IYO_RS29420 () | 7385..8008 | + | 624 | WP_017684946.1 | glycoside hydrolase family 25 protein | - |
| IYO_RS29425 () | 8454..8684 | + | 231 | WP_017684963.1 | hypothetical protein | - |
| IYO_RS29430 () | 8684..10336 | + | 1653 | WP_017684962.1 | type IV secretory system conjugative DNA transfer family protein | - |
| IYO_RS29435 () | 10377..10739 | + | 363 | WP_015060690.1 | IncN plasmid killer protein | - |
| IYO_RS29440 () | 10767..12665 | + | 1899 | WP_017684961.1 | DNA topoisomerase III | - |
| IYO_RS29445 () | 12688..15717 | - | 3030 | WP_017682807.1 | Tn3 family transposase ISPsy42 | Transposase |
| IYO_RS29450 () | 15746..16318 | - | 573 | WP_004666660.1 | Tn3 family transposase ISPsy42 | Transposase |
| IYO_RS29455 () | 16498..16749 | + | 252 | WP_003108276.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| IYO_RS29460 () | 16746..17141 | + | 396 | WP_004666661.1 | type II toxin-antitoxin system VapC family toxin | - |
| IYO_RS29465 () | 17302..17679 | - | 378 | WP_004666662.1 | hypothetical protein | - |
| IYO_RS29470 () | 17747..17983 | - | 237 | Protein_19 | Tn3 family transposase ISPsy42 | Transposase |
| IYO_RS29475 () | 18442..20073 | - | 1632 | WP_020358614.1 | Methyl-accepting chemotaxis protein McpQ | VF |
| IYO_RS32910 () | 20247..20792 | + | 546 | Protein_21 | IS5 family transposase ISPsy19 | Transposase |
| IYO_RS29485 () | 21823..22200 | + | 378 | WP_003344294.1 | hypothetical protein | - |
| IYO_RS29490 () | 22247..23083 | + | 837 | WP_017684524.1 | DUF945 domain-containing protein | - |
| IYO_RS29495 () | 23151..23351 | + | 201 | WP_017684525.1 | hypothetical protein | - |
| IYO_RS29500 () | 23417..23695 | - | 279 | WP_017684526.1 | hypothetical protein | - |
| IYO_RS29505 () | 23993..24337 | - | 345 | WP_017684528.1 | hypothetical protein | - |
| IYO_RS29510 () | 24583..24912 | + | 330 | WP_003344297.1 | ribbon-helix-helix protein, CopG family | - |
| IYO_RS29515 () | 24923..26878 | + | 1956 | WP_017684529.1 | Protein TraI | Relaxase |
| IYO_RS29525 () | 27173..28015 | - | 843 | WP_005734710.1 | Transcriptional activator protein LasR | VF |
| IYO_RS29530 () | 28073..28666 | - | 594 | WP_005734709.1 | aminodeoxychorismate/anthranilate synthase component II | - |
| IYO_RS29535 () | 28663..30129 | - | 1467 | WP_005734708.1 | 2-amino-4-deoxychorismate synthase | VF |
| IYO_RS29540 () | 30759..32111 | + | 1353 | WP_017684531.1 | phenylacetate--CoA ligase family protein | - |
| IYO_RS29545 () | 32118..32663 | + | 546 | WP_005734707.1 | hypothetical protein | - |
| IYO_RS29550 () | 32665..33348 | + | 684 | WP_003319174.1 | iron-containing redox enzyme family protein | - |
| IYO_RS29555 () | 33352..33969 | + | 618 | WP_017699540.1 | flavodoxin family protein | - |
| IYO_RS29560 () | 33972..34880 | + | 909 | WP_017685046.1 | EamA family transporter | - |
| IYO_RS29565 () | 34867..35817 | + | 951 | WP_017685047.1 | alpha/beta fold hydrolase | - |
| IYO_RS29570 () | 36794..38086 | - | 1293 | WP_017685048.1 | glycoside hydrolase family 68 protein | - |
| IYO_RS29575 () | 38354..38974 | + | 621 | WP_005769724.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| IYO_RS32940 () | 38993..39289 | - | 297 | WP_017685207.1 | hypothetical protein | - |
| IYO_RS29590 () | 39940..43314 | + | 3375 | WP_017684689.1 | hypothetical protein | VF |
| IYO_RS29595 () | 43342..43764 | + | 423 | WP_017684688.1 | hypothetical protein | - |
| IYO_RS29600 () | 43785..44348 | + | 564 | WP_010206573.1 | hypothetical protein | - |
| IYO_RS29605 () | 44536..44964 | + | 429 | WP_017684687.1 | GntR family transcriptional regulator | - |
| IYO_RS29610 () | 45044..45271 | + | 228 | WP_017684686.1 | hypothetical protein | - |
| IYO_RS29615 () | 45669..46982 | + | 1314 | WP_017684685.1 | replication initiation protein | - |
| IYO_RS29620 () | 47194..47508 | + | 315 | WP_017684684.1 | HU family DNA-binding protein | - |
| IYO_RS29625 () | 48102..48620 | + | 519 | WP_017684683.1 | DUF4113 domain-containing protein | - |
| IYO_RS29630 () | 48632..48853 | + | 222 | WP_017684682.1 | hypothetical protein | - |
| IYO_RS29635 () | 49307..49744 | + | 438 | WP_074291445.1 | DUF4113 domain-containing protein | - |
| IYO_RS29640 () | 50320..50571 | - | 252 | WP_020316509.1 | ribbon-helix-helix protein, CopG family | - |
| IYO_RS29645 () | 50668..51324 | - | 657 | WP_017685030.1 | AAA family ATPase | - |
| IYO_RS34650 () | 51440..51595 | + | 156 | WP_153303633.1 | hypothetical protein | - |
| IYO_RS29655 () | 52159..52707 | - | 549 | WP_017685033.1 | hypothetical protein | - |
| IYO_RS29660 () | 52804..53265 | + | 462 | WP_020365478.1 | SOS response-associated peptidase family protein | - |
| IYO_RS29665 () | 53535..54308 | - | 774 | Protein_56 | type III effector | - |
| IYO_RS29670 () | 54412..55014 | - | 603 | Protein_57 | type III effector | - |
| IYO_RS29675 () | 55389..57833 | + | 2445 | WP_017685035.1 | hypothetical protein | - |
| IYO_RS32950 () | 57977..58201 | - | 225 | Protein_59 | transposase | - |
| IYO_RS29680 () | 58942..59187 | + | 246 | WP_017685036.1 | hypothetical protein | - |
| IYO_RS29685 () | 59742..60158 | + | 417 | WP_017685037.1 | hypothetical protein | - |
| IYO_RS29690 () | 60196..60426 | + | 231 | WP_017685038.1 | hypothetical protein | - |
| IYO_RS29695 () | 60516..61055 | + | 540 | WP_017685039.1 | hypothetical protein | - |
| IYO_RS29710 () | 63283..63462 | + | 180 | WP_017685223.1 | hypothetical protein | - |
| IYO_RS29715 () | 63730..63954 | + | 225 | WP_017699623.1 | carbon storage regulator | - |
| IYO_RS29720 () | 63984..64397 | + | 414 | WP_017685173.1 | TraR/DksA family transcriptional regulator | - |
| IYO_RS29725 () | 64435..64656 | + | 222 | WP_004666801.1 | hypothetical protein | - |
| IYO_RS29735 () | 64982..65602 | - | 621 | WP_005769724.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| IYO_RS29740 () | 65990..66400 | + | 411 | Protein_70 | ParA family protein | - |
| IYO_RS32965 () | 66453..67634 | - | 1182 | Protein_71 | IS3 family transposase ISPsy28 | Transposase |
| IYO_RS29755 () | 67927..68466 | - | 540 | WP_017685167.1 | hypothetical protein | - |
| IYO_RS29760 () | 68871..69125 | - | 255 | WP_003381350.1 | hypothetical protein | - |
| IYO_RS32970 () | 69152..69412 | - | 261 | Protein_74 | hypothetical protein | - |
| IYO_RS32975 () | 69474..70651 | + | 1178 | WP_164706461.1 | IS3 family transposase ISPsy28 | Transposase |
| IYO_RS29775 () | 70673..71011 | - | 339 | WP_017685230.1 | hypothetical protein | - |
| IYO_RS34655 () | 71148..71435 | - | 288 | WP_153303634.1 | hypothetical protein | - |
| IYO_RS29780 () | 71517..71909 | - | 393 | WP_017685201.1 | hypothetical protein | - |
| IYO_RS29785 () | 72087..73154 | + | 1068 | WP_074556923.1 | IS630 family transposase ISPsy32 | Transposase |
| IYO_RS29790 () | 73351..74313 | - | 963 | WP_017685121.1 | tyrosine-type recombinase/integrase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|