MGE detailed information
MGE type: Genomic_island MGE length: 58832 bp
Accession: NZ_CP011972 Location: 729366..788197 Organism: Pseudomonas syringae pv. actinidiae ICMP 18884 Replicon: chromosome
Accession: NZ_CP011972 Location: 729366..788197 Organism: Pseudomonas syringae pv. actinidiae ICMP 18884 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IYO_RS03515 () | 726374..726925 | - | 552 | WP_017684234.1 | DUF4123 domain-containing protein | - |
| IYO_RS03520 () | 726922..728988 | - | 2067 | WP_017684235.1 | type VI secretion system tip protein VgrG | - |
| IYO_RS03525 () | 729486..730709 | + | 1224 | WP_003379982.1 | type III secretion system effector protein | - |
| IYO_RS03530 () | 730826..732943 | - | 2118 | WP_074291453.1 | type III secretion system effector HopD1 | - |
| IYO_RS03535 () | 733502..733738 | - | 237 | WP_017684237.1 | carbon storage regulator | - |
| IYO_RS03540 () | 733940..734518 | - | 579 | WP_017684238.1 | AAA family ATPase | - |
| IYO_RS34975 () | 734518..734850 | - | 333 | WP_003381336.1 | SanC | - |
| IYO_RS03550 () | 735211..736413 | - | 1203 | WP_017684239.1 | aspartate aminotransferase family protein | - |
| IYO_RS03555 () | 736454..737488 | - | 1035 | WP_017684240.1 | sulfotransferase | - |
| IYO_RS03560 () | 737506..738426 | - | 921 | WP_020313563.1 | TauD/TfdA family dioxygenase | - |
| IYO_RS03565 () | 738572..739219 | - | 648 | WP_017703697.1 | histidine phosphatase family protein | - |
| IYO_RS03570 () | 739560..740495 | - | 936 | WP_017704392.1 | syringolide biosynthetic protein AvrD1 | - |
| IYO_RS03575 () | 740770..741403 | - | 634 | Protein_698 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| IYO_RS03580 () | 741444..741863 | - | 420 | WP_017684243.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| IYO_RS03585 () | 741860..742117 | - | 258 | WP_003381346.1 | Arc family DNA-binding protein | Antitoxin Detail |
| IYO_RS03590 () | 742472..743128 | + | 657 | WP_017684244.1 | hypothetical protein | - |
| IYO_RS03595 () | 743176..743430 | + | 255 | WP_003381350.1 | hypothetical protein | - |
| IYO_RS30100 () | 744247..745209 | - | 963 | WP_003383614.1 | type III effector | - |
| IYO_RS03610 () | 746579..747646 | + | 1068 | WP_074556883.1 | IS630 family transposase ISPsy32 | Transposase |
| IYO_RS03615 () | 747857..748399 | + | 543 | WP_078983215.1 | YopT-type cysteine protease domain-containing protein | - |
| IYO_RS30110 () | 748438..748626 | + | 189 | Protein_706 | helix-turn-helix domain-containing protein | - |
| IYO_RS03620 () | 748690..748857 | + | 168 | Protein_707 | Tn3 family transposase TnpA_ISPa40 | Transposase |
| IYO_RS03625 () | 748959..750026 | + | 1068 | WP_032685463.1 | IS630 family transposase ISPsy32 | Transposase |
| IYO_RS03630 () | 750112..750498 | + | 387 | WP_017685026.1 | CesT family type III secretion system chaperone | - |
| IYO_RS03635 () | 750631..751635 | + | 1005 | WP_020313558.1 | hypothetical protein | - |
| IYO_RS03640 () | 752105..752665 | + | 561 | WP_005782565.1 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| IYO_RS03645 () | 752670..754307 | + | 1638 | WP_198407578.1 | IS481 family transposase ISAzs36 | Transposase |
| IYO_RS03650 () | 754297..755268 | + | 972 | WP_017685029.1 | ExeA family protein | - |
| IYO_RS03655 () | 755546..756613 | + | 1068 | WP_074556885.1 | IS630 family transposase ISPsy32 | Transposase |
| IYO_RS30125 () | 756750..757406 | + | 657 | WP_004666980.1 | YopT-type cysteine protease domain-containing protein | - |
| IYO_RS34980 () | 757456..757703 | - | 248 | Protein_716 | recombinase family protein | - |
| IYO_RS03660 () | 757924..758202 | - | 279 | Protein_717 | IS91 family transposase IS801 | Transposase |
| IYO_RS03665 () | 758396..758791 | + | 396 | WP_017685097.1 | CesT family type III secretion system chaperone | - |
| IYO_RS33160 () | 758804..759646 | + | 843 | WP_074291504.1 | type III effector HopF2 | - |
| IYO_RS34690 () | 760689..761099 | + | 411 | WP_020313555.1 | hypothetical protein | - |
| IYO_RS03685 () | 761522..762118 | + | 597 | WP_003381935.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| IYO_RS03690 () | 762108..762266 | + | 159 | WP_003381934.1 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| IYO_RS03695 () | 762309..762689 | + | 381 | WP_017684874.1 | hypothetical protein | - |
| IYO_RS03700 () | 762704..762955 | + | 252 | WP_017684873.1 | hypothetical protein | - |
| IYO_RS03705 () | 763166..763390 | + | 225 | WP_003407134.1 | carbon storage regulator | - |
| IYO_RS03710 () | 763573..763803 | + | 231 | WP_017684872.1 | hypothetical protein | - |
| IYO_RS03715 () | 763930..764802 | + | 873 | WP_017684871.1 | DUF3800 domain-containing protein | - |
| IYO_RS03720 () | 765487..766506 | - | 1020 | WP_017684870.1 | tyrosine phosphatase | - |
| IYO_RS03725 () | 766913..767305 | + | 393 | WP_017684869.1 | CesT family type III secretion system chaperone | - |
| IYO_RS30150 () | 767322..768164 | + | 843 | WP_020362659.1 | type III effector HopF2 | - |
| IYO_RS03735 () | 769029..769583 | + | 555 | WP_003381924.1 | hypothetical protein | - |
| IYO_RS03740 () | 770479..771234 | - | 756 | WP_017699032.1 | IS21 family transposase ISPsy41 | Transposase |
| IYO_RS03745 () | 771255..772769 | - | 1515 | WP_051120727.1 | IS21 family transposase ISPsy41 | Transposase |
| IYO_RS03755 () | 773099..773893 | - | 795 | WP_017685181.1 | hypothetical protein | - |
| IYO_RS03760 () | 774850..775917 | - | 1068 | WP_032685463.1 | IS630 family transposase ISPsy32 | Transposase |
| IYO_RS03765 () | 776062..777369 | + | 1308 | WP_017684148.1 | hypothetical protein | - |
| IYO_RS03770 () | 777514..778437 | - | 924 | WP_017684147.1 | hypothetical protein | - |
| IYO_RS03775 () | 779092..779337 | - | 246 | WP_017684146.1 | hypothetical protein | VF |
| IYO_RS03780 () | 779373..780422 | - | 1050 | WP_017684145.1 | LLM class flavin-dependent oxidoreductase | - |
| IYO_RS03785 () | 780499..785964 | - | 5466 | WP_017684144.1 | D-alanine--poly(phosphoribitol) ligase subunit 1 | VF |
| IYO_RS03790 () | 786620..787894 | + | 1275 | WP_017684143.1 | MFS transporter | - |
| IYO_RS03795 () | 787976..788197 | + | 222 | WP_017684142.1 | hypothetical protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|