MGE detailed information
MGE type: Genomic_island MGE length: 9049 bp
Accession: NZ_CP011321 Location: 4541643..4550691 Organism: Escherichia coli strain SQ88 Replicon: chromosome
Accession: NZ_CP011321 Location: 4541643..4550691 Organism: Escherichia coli strain SQ88 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SG49_RS25680 () | 4538227..4539147 | + | 921 | Protein_4277 | Rpn family recombination-promoting nuclease/putative transposase | - |
| SG49_RS22460 () | 4539391..4540803 | - | 1413 | WP_000199300.1 | PLP-dependent aminotransferase family protein | - |
| SG49_RS22465 () | 4540980..4541144 | + | 165 | WP_000394280.1 | DUF1127 domain-containing protein | - |
| SG49_RS22470 () | 4541643..4543151 | + | 1509 | Protein_4280 | protein YjiT | - |
| SG49_RS22475 () | 4543148..4546084 | + | 2937 | Protein_4281 | hypothetical protein | - |
| SG49_RS22480 () | 4546141..4547187 | - | 1047 | WP_000437621.1 | 5-methylcytosine-specific restriction endonuclease system specificity protein McrC | - |
| SG49_RS22485 () | 4547187..4548566 | - | 1380 | WP_000443951.1 | 5-methylcytosine-specific restriction endonuclease subunit McrB | - |
| SG49_RS22490 () | 4548728..4549069 | - | 342 | WP_000132601.1 | endoribonuclease SymE | Toxin Detail |
| - () | 4549064..4549140 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - () | 4549064..4549140 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - () | 4549064..4549140 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - () | 4549064..4549140 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - () | 4549064..4549140 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| - () | 4549064..4549140 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| - () | 4549064..4549140 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| - () | 4549064..4549140 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| SG49_RS22495 () | 4549297..4550691 | - | 1395 | WP_001272447.1 | type I restriction-modification system specificity subunit | - |
| SG49_RS22500 () | 4550688..4552277 | - | 1590 | WP_001063204.1 | type I restriction-modification system methyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20090 | HG738867 | 4458009..4467057 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6352 | NC_000913 | 4572414..4581462 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21461 | NC_007779 | 4577094..4586142 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA6351 | NC_012759 | 4508921..4517969 | 0 | |
| Escherichia coli DH1 | Genomic island | TA27427 | NC_017638 | 4552192..4561240 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48706 | NZ_CP009273 | 4562231..4571279 | 0 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90501 | NZ_CP025520 | 3428612..3437660 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285035 | NZ_HG738867 | 4458009..4467057 | 0 |