MGE detailed information
MGE type: Genomic_island MGE length: 77391 bp
Accession: NZ_CP011061 Location: 4551835..4629225 Organism: Escherichia coli str. Sanji Replicon: chromosome
Accession: NZ_CP011061 Location: 4551835..4629225 Organism: Escherichia coli str. Sanji Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Y979_RS22320 () | 4548242..4548961 | - | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
| Y979_RS22325 () | 4548958..4550589 | - | 1632 | WP_001216477.1 | sensor histidine kinase | - |
| Y979_RS22330 () | 4550770..4551000 | + | 231 | WP_000371704.1 | (4Fe-4S)-binding protein | - |
| Y979_RS22335 () | 4551012..4551284 | + | 273 | WP_000405651.1 | N-acetyltransferase | - |
| Y979_RS22345 () | 4551511..4551807 | + | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | - |
| Y979_RS22350 () | 4551835..4552008 | + | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | - |
| Y979_RS22355 () | 4552127..4553644 | - | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| Y979_RS22360 () | 4553881..4555338 | - | 1458 | WP_000856829.1 | dipeptide/tripeptide permease DtpC | - |
| Y979_RS22365 () | 4555397..4557544 | - | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| Y979_RS22370 () | 4557624..4558958 | - | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| Y979_RS22375 () | 4559323..4560861 | - | 1539 | WP_001187173.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| Y979_RS22385 () | 4561744..4562070 | - | 327 | WP_000779483.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| Y979_RS22390 () | 4562067..4562330 | - | 264 | WP_025492088.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| Y979_RS22395 () | 4562402..4563268 | - | 867 | WP_032153714.1 | DUF4942 domain-containing protein | - |
| Y979_RS22400 () | 4563353..4563550 | - | 198 | WP_000839265.1 | DUF957 domain-containing protein | - |
| Y979_RS22405 () | 4563562..4564053 | - | 492 | WP_023155722.1 | hypothetical protein | - |
| Y979_RS22410 () | 4564050..4564427 | - | 378 | WP_000854735.1 | TA system toxin CbtA family protein | Toxin Detail |
| Y979_RS22415 () | 4564474..4564848 | - | 375 | WP_032153712.1 | type IV toxin-antitoxin system toxin CbtA | Antitoxin Detail |
| Y979_RS22420 () | 4564928..4565149 | - | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| Y979_RS22425 () | 4565218..4565694 | - | 477 | WP_001186715.1 | RadC family protein | - |
| Y979_RS22430 () | 4565710..4566195 | - | 486 | WP_032153711.1 | antirestriction protein | - |
| Y979_RS22435 () | 4566287..4567105 | - | 819 | WP_001234693.1 | DUF945 domain-containing protein | - |
| Y979_RS22440 () | 4567196..4567405 | - | 210 | WP_023155727.1 | DUF905 family protein | - |
| Y979_RS22445 () | 4567435..4568112 | - | 678 | WP_023155728.1 | hypothetical protein | - |
| Y979_RS22450 () | 4568231..4569115 | - | 885 | WP_024166630.1 | 50S ribosome-binding GTPase | - |
| Y979_RS22455 () | 4569222..4570154 | + | 933 | WP_023155730.1 | hypothetical protein | - |
| Y979_RS22460 () | 4570151..4570960 | - | 810 | WP_032153709.1 | hypothetical protein | - |
| Y979_RS22465 () | 4572711..4573442 | + | 732 | WP_032153707.1 | inovirus Gp2 family protein | - |
| Y979_RS28835 () | 4573536..4574193 | - | 658 | Protein_4266 | transposase | - |
| Y979_RS22480 () | 4574627..4576231 | + | 1605 | WP_001067608.1 | DUF3987 domain-containing protein | - |
| Y979_RS22485 () | 4577828..4578394 | + | 567 | WP_032153705.1 | inovirus-type Gp2 protein | - |
| Y979_RS31230 () | 4578514..4578663 | - | 150 | WP_001421645.1 | hypothetical protein | - |
| Y979_RS31235 () | 4578678..4579250 | + | 573 | WP_032153703.1 | hypothetical protein | - |
| Y979_RS22495 () | 4579319..4579555 | + | 237 | WP_000958154.1 | AlpA family transcriptional regulator | - |
| Y979_RS22500 () | 4579824..4580372 | + | 549 | WP_032153702.1 | hypothetical protein | - |
| Y979_RS30110 () | 4580391..4580639 | - | 249 | WP_001349534.1 | osmoprotectant transport activator ProQ | - |
| Y979_RS30115 () | 4580708..4580899 | - | 192 | WP_001323513.1 | hypothetical protein | - |
| Y979_RS30120 () | 4581302..4581993 | - | 692 | Protein_4275 | IS1 family transposase | - |
| Y979_RS28850 () | 4582053..4582229 | + | 177 | Protein_4276 | transketolase family protein | - |
| Y979_RS28855 () | 4582492..4582605 | + | 114 | WP_131501864.1 | transposase | - |
| Y979_RS22525 () | 4583456..4584022 | + | 567 | WP_000919994.1 | hypothetical protein | - |
| Y979_RS22530 () | 4584263..4585078 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| Y979_RS22535 () | 4585139..4585942 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| Y979_RS22540 () | 4585942..4586778 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| Y979_RS22550 () | 4587084..4587326 | + | 243 | WP_000844627.1 | transposase | - |
| Y979_RS22555 () | 4587358..4588008 | - | 651 | WP_001493764.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| Y979_RS22560 () | 4588114..4589313 | + | 1200 | WP_032153701.1 | Tetracycline resistance protein, class C | ARG |
| Y979_RS30800 () | 4589280..4589468 | - | 189 | Protein_4285 | IS91 family transposase | - |
| Y979_RS22565 () | 4589580..4589885 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| Y979_RS22570 () | 4589913..4591127 | - | 1215 | WP_023300759.1 | Bicyclomycin resistance protein | ARG |
| Y979_RS31480 () | 4591344..4591790 | - | 447 | Protein_4288 | DUF3363 domain-containing protein | - |
| Y979_RS22580 () | 4592259..4592915 | - | 657 | Protein_4289 | IS91-like element ISVsa3 family transposase | - |
| Y979_RS30805 () | 4592849..4593127 | - | 279 | WP_001349530.1 | P fimbrial regulatory protein KS71A | VF |
| Y979_RS22595 () | 4593550..4593864 | + | 315 | WP_000930062.1 | Major pilu subunit operon regulatory protein PapB | VF |
| Y979_RS22600 () | 4594071..4594334 | + | 264 | Protein_4292 | Pap fimbrial major pilin protein | VF |
| Y979_RS22605 () | 4594785..4596017 | - | 1233 | WP_000271619.1 | dNTP triphosphohydrolase | - |
| Y979_RS22610 () | 4596168..4597329 | - | 1162 | Protein_4294 | IS3 family transposase IS3 | Transposase |
| Y979_RS22620 () | 4597497..4598477 | + | 981 | WP_062914740.1 | thymidylate synthase | - |
| Y979_RS22625 () | 4598474..4599418 | + | 945 | WP_000820616.1 | hypothetical protein | - |
| Y979_RS22630 () | 4599421..4600503 | - | 1083 | WP_000637419.1 | XRE family transcriptional regulator | - |
| Y979_RS22640 () | 4600970..4601236 | + | 267 | WP_032153698.1 | MazG-like family protein | - |
| Y979_RS30130 () | 4601536..4602050 | - | 515 | Protein_4299 | ISL3 family transposase ISEc38 | Transposase |
| Y979_RS22650 () | 4602658..4606071 | + | 3414 | WP_000438165.1 | DEAD/DEAH box helicase family protein | - |
| Y979_RS22655 () | 4606135..4607769 | + | 1635 | WP_000627728.1 | type I restriction-modification system subunit M | - |
| Y979_RS22660 () | 4607766..4608908 | + | 1143 | WP_000742120.1 | restriction endonuclease subunit S | - |
| Y979_RS22665 () | 4608917..4610539 | + | 1623 | WP_000778955.1 | AAA family ATPase | - |
| Y979_RS22670 () | 4610539..4611435 | + | 897 | WP_000499115.1 | hypothetical protein | - |
| Y979_RS30135 () | 4611658..4611887 | - | 230 | Protein_4305 | integrase | - |
| Y979_RS22675 () | 4612066..4612803 | + | 738 | WP_001398114.1 | porin family protein | - |
| Y979_RS22680 () | 4613223..4614119 | + | 897 | WP_000228490.1 | WYL domain-containing protein | - |
| Y979_RS22685 () | 4614168..4615247 | + | 1080 | WP_001207396.1 | hypothetical protein | - |
| Y979_RS22690 () | 4615294..4616865 | + | 1572 | WP_001100182.1 | ATP--cob(I)alamin adenosyltransferase | - |
| Y979_RS22695 () | 4616862..4617128 | + | 267 | WP_000766274.1 | YkgJ family cysteine cluster protein | - |
| Y979_RS22700 () | 4617268..4617465 | + | 198 | WP_001238004.1 | hypothetical protein | - |
| Y979_RS22705 () | 4617518..4619191 | + | 1674 | WP_025492097.1 | phosphoethanolamine transferase | - |
| Y979_RS22710 () | 4619335..4620369 | - | 1035 | WP_032153697.1 | tetratricopeptide repeat family protein | - |
| Y979_RS22715 () | 4620419..4620780 | + | 362 | Protein_4314 | IS1 family transposase IS1A | Transposase |
| Y979_RS31245 () | 4620769..4621056 | + | 288 | Protein_4315 | integrase core domain-containing protein | - |
| Y979_RS22725 () | 4621634..4623028 | - | 1395 | WP_001037798.1 | carbohydrate porin | - |
| Y979_RS22730 () | 4623223..4624656 | - | 1434 | WP_024144973.1 | glycoside hydrolase family 32 protein | - |
| Y979_RS22735 () | 4624653..4625930 | - | 1278 | WP_001083368.1 | MFS transporter | - |
| Y979_RS22740 () | 4625993..4628119 | - | 2127 | WP_000253907.1 | alpha-galactosidase | - |
| Y979_RS22745 () | 4628215..4629225 | - | 1011 | WP_000053331.1 | substrate-binding domain-containing protein | - |
| Y979_RS22750 () | 4629375..4630559 | - | 1185 | WP_001218742.1 | tyrosine-type recombinase/integrase | - |
| Y979_RS22760 () | 4630918..4631493 | - | 576 | WP_001188520.1 | transcriptional regulator | - |
| Y979_RS22765 () | 4631530..4633227 | - | 1698 | WP_000068922.1 | protein-disulfide reductase DsbD | - |
| Y979_RS22770 () | 4633203..4633541 | - | 339 | WP_000883400.1 | divalent cation tolerance protein CutA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|