MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 73358 bp
Accession: NZ_CP010554 Location: 1864302..1937659 Organism: Rugosibacter aromaticivorans strain Ca6 Replicon: chromosome
Accession: NZ_CP010554 Location: 1864302..1937659 Organism: Rugosibacter aromaticivorans strain Ca6 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PG1C_RS09335 () | 1859635..1860864 | + | 1230 | WP_202634532.1 | GIY-YIG nuclease family protein | - |
| PG1C_RS09340 () | 1861069..1863651 | + | 2583 | WP_202634533.1 | EAL domain-containing protein | - |
| PG1C_RS09345 () | 1863725..1864021 | + | 297 | WP_202634534.1 | tyrosine-type recombinase/integrase | - |
| PG1C_RS09350 () | 1864398..1865705 | + | 1308 | WP_202634535.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| PG1C_RS09355 () | 1865702..1866259 | + | 558 | WP_202634536.1 | ORF6N domain-containing protein | - |
| PG1C_RS09360 () | 1866291..1866716 | + | 426 | WP_202634537.1 | hypothetical protein | - |
| PG1C_RS09365 () | 1866822..1867100 | - | 279 | WP_202634538.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| PG1C_RS09370 () | 1867087..1867353 | - | 267 | WP_202634539.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| PG1C_RS09375 () | 1867687..1868745 | + | 1059 | WP_202634540.1 | hypothetical protein | - |
| PG1C_RS09380 () | 1868708..1869553 | + | 846 | WP_202634541.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| PG1C_RS09385 () | 1869593..1869889 | + | 297 | WP_202634542.1 | integration host factor subunit beta | - |
| PG1C_RS09390 () | 1869886..1870083 | + | 198 | WP_202634543.1 | hypothetical protein | - |
| PG1C_RS09395 () | 1870333..1870722 | - | 390 | WP_202634544.1 | ATPase | - |
| PG1C_RS09400 () | 1870736..1871074 | - | 339 | WP_202634545.1 | hypothetical protein | - |
| PG1C_RS09405 () | 1871205..1871519 | - | 315 | WP_202637006.1 | DUF736 domain-containing protein | - |
| PG1C_RS09410 () | 1871792..1872157 | - | 366 | WP_202634546.1 | hypothetical protein | - |
| PG1C_RS09415 () | 1872173..1874131 | - | 1959 | WP_202634547.1 | ParB/RepB/Spo0J family partition protein | - |
| PG1C_RS09420 () | 1874314..1874517 | + | 204 | WP_202634548.1 | hypothetical protein | - |
| PG1C_RS09425 () | 1874803..1875309 | - | 507 | WP_202634549.1 | DNA repair protein RadC | - |
| PG1C_RS09430 () | 1875724..1876116 | + | 393 | WP_202634550.1 | hypothetical protein | - |
| PG1C_RS09435 () | 1876273..1877523 | + | 1251 | WP_202637007.1 | TolC family protein | - |
| PG1C_RS09440 () | 1877545..1879224 | + | 1680 | WP_202634551.1 | efflux RND transporter periplasmic adaptor subunit | - |
| PG1C_RS09445 () | 1879221..1882352 | + | 3132 | WP_202634552.1 | efflux RND transporter permease subunit | - |
| PG1C_RS09450 () | 1882676..1883104 | + | 429 | WP_202634553.1 | hypothetical protein | - |
| PG1C_RS09455 () | 1883197..1884465 | + | 1269 | WP_202634554.1 | TolC family protein | - |
| PG1C_RS09460 () | 1884476..1886032 | + | 1557 | WP_202634555.1 | efflux RND transporter periplasmic adaptor subunit | - |
| PG1C_RS09465 () | 1886046..1886387 | + | 342 | WP_202634556.1 | P-II family nitrogen regulator | - |
| PG1C_RS09470 () | 1886399..1889575 | + | 3177 | WP_202634557.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| PG1C_RS09475 () | 1889608..1890063 | + | 456 | WP_202634558.1 | Protein SapB | VF |
| PG1C_RS09480 () | 1890111..1890419 | + | 309 | WP_202634559.1 | zinc ribbon domain-containing protein | - |
| PG1C_RS09485 () | 1890857..1892938 | - | 2082 | WP_202634560.1 | TonB-dependent receptor | - |
| PG1C_RS09490 () | 1893213..1894127 | - | 915 | WP_202634561.1 | cation diffusion facilitator family transporter | - |
| PG1C_RS09495 () | 1894282..1896873 | - | 2592 | WP_202634562.1 | heavy metal translocating P-type ATPase | - |
| PG1C_RS09500 () | 1897034..1897273 | - | 240 | WP_202634563.1 | hypothetical protein | - |
| PG1C_RS09505 () | 1897432..1897770 | - | 339 | WP_202634564.1 | P-II family nitrogen regulator | - |
| PG1C_RS09510 () | 1897767..1900901 | - | 3135 | WP_202634565.1 | efflux RND transporter permease subunit | - |
| PG1C_RS09515 () | 1900912..1902069 | - | 1158 | WP_202637008.1 | efflux RND transporter periplasmic adaptor subunit | - |
| PG1C_RS09520 () | 1902150..1903454 | - | 1305 | WP_202634566.1 | TolC family protein | - |
| PG1C_RS09525 () | 1903554..1903901 | - | 348 | WP_202634567.1 | hypothetical protein | - |
| PG1C_RS09530 () | 1904045..1904626 | - | 582 | WP_202634568.1 | hypothetical protein | - |
| PG1C_RS09535 () | 1904777..1905121 | - | 345 | WP_202634569.1 | YnfA family protein | - |
| PG1C_RS09540 () | 1905159..1907342 | - | 2184 | WP_202634570.1 | heavy metal translocating P-type ATPase | - |
| PG1C_RS09545 () | 1907441..1907905 | + | 465 | WP_202637009.1 | Cd(II)/Pb(II)-responsive transcriptional regulator | - |
| PG1C_RS09550 () | 1907911..1908951 | + | 1041 | WP_202637010.1 | DMT family transporter | - |
| PG1C_RS09555 () | 1909166..1912186 | + | 3021 | WP_202634571.1 | DEAD/DEAH box helicase | - |
| PG1C_RS09560 () | 1912415..1915525 | + | 3111 | WP_202634572.1 | hypothetical protein | - |
| PG1C_RS09565 () | 1915659..1917968 | + | 2310 | WP_202634573.1 | DEAD/DEAH box helicase family protein | - |
| PG1C_RS09570 () | 1918630..1919385 | + | 756 | WP_202634574.1 | autoinducer binding domain-containing protein | - |
| PG1C_RS09575 () | 1919643..1919960 | + | 318 | WP_202634575.1 | hypothetical protein | VF |
| PG1C_RS09580 () | 1919974..1920255 | + | 282 | WP_202634576.1 | Type IV secretion system protein virB3 | VF |
| PG1C_RS09585 () | 1920278..1922680 | + | 2403 | WP_202634577.1 | Type IV secretion system protein virB4 | VF |
| PG1C_RS09590 () | 1922677..1923396 | + | 720 | WP_202634578.1 | type IV secretion system protein | - |
| PG1C_RS09595 () | 1923548..1923910 | + | 363 | WP_202634579.1 | hypothetical protein | - |
| PG1C_RS09600 () | 1923931..1924818 | + | 888 | WP_202634580.1 | type IV secretion system protein | - |
| PG1C_RS09605 () | 1924836..1925567 | + | 732 | WP_202634581.1 | Type IV secretion system protein PtlE | VF |
| PG1C_RS09610 () | 1925564..1926352 | + | 789 | WP_202634582.1 | Type IV secretion system protein virB9 | VF |
| PG1C_RS09615 () | 1926349..1927611 | + | 1263 | WP_202634583.1 | Type IV secretion system protein virB10 | VF |
| PG1C_RS09620 () | 1927630..1928736 | + | 1107 | WP_202634584.1 | Type IV secretion system protein VirB11 | VF |
| PG1C_RS09625 () | 1928702..1929259 | + | 558 | WP_202634585.1 | hypothetical protein | - |
| PG1C_RS09630 () | 1929256..1930767 | + | 1512 | WP_202634586.1 | type IV secretion system DNA-binding domain-containing protein | - |
| PG1C_RS09635 () | 1930782..1933580 | + | 2799 | WP_202634587.1 | conjugative relaxase | - |
| PG1C_RS09640 () | 1933596..1933958 | + | 363 | WP_202634588.1 | hypothetical protein | - |
| PG1C_RS09645 () | 1933955..1934302 | + | 348 | WP_202634589.1 | hypothetical protein | - |
| PG1C_RS09650 () | 1934292..1934642 | + | 351 | WP_202634590.1 | hypothetical protein | - |
| PG1C_RS09655 () | 1934689..1935948 | - | 1260 | WP_202636918.1 | IS256 family transposase ISCARN45 | Transposase |
| PG1C_RS09660 () | 1936099..1936827 | + | 729 | WP_202634591.1 | hypothetical protein | - |
| PG1C_RS09665 () | 1936839..1937318 | + | 480 | WP_202634592.1 | hypothetical protein | - |
| PG1C_RS09670 () | 1937343..1937561 | + | 219 | WP_202634593.1 | helix-turn-helix domain-containing protein | - |
| PG1C_RS09680 () | 1937924..1938427 | - | 504 | WP_202634594.1 | WecB/TagA/CpsF family glycosyltransferase | - |
| PG1C_RS09685 () | 1938444..1939703 | - | 1260 | WP_202636918.1 | IS256 family transposase | - |
| PG1C_RS09690 () | 1940091..1940603 | + | 513 | WP_202634595.1 | C40 family peptidase | - |
| PG1C_RS09695 () | 1940717..1940956 | + | 240 | WP_202634596.1 | CDGSH iron-sulfur domain-containing protein | - |
| PG1C_RS09700 () | 1941016..1941741 | + | 726 | WP_202634597.1 | leucyl/phenylalanyl-tRNA--protein transferase | - |
| PG1C_RS09705 () | 1941738..1942484 | + | 747 | WP_202634598.1 | arginyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|