MGE detailed information
MGE type: Genomic_island MGE length: 26985 bp
Accession: NZ_CP010444 Location: 4002075..4029059 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Accession: NZ_CP010444 Location: 4002075..4029059 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH07_RS19730 () | 3997360..3998724 | - | 1365 | WP_000622126.1 | L-serine ammonia-lyase | - |
| SH07_RS19735 () | 3998796..3999185 | - | 390 | WP_000719990.1 | enamine/imine deaminase | - |
| SH07_RS19740 () | 3999199..4001493 | - | 2295 | WP_000861734.1 | 2-ketobutyrate formate-lyase/pyruvate formate-lyase | - |
| SH07_RS24555 () | 4001527..4001928 | - | 402 | Protein_3733 | propionate/acetate kinase | - |
| SH07_RS19750 () | 4002075..4003091 | - | 1017 | WP_010723085.1 | IS5 family transposase IS5D | Transposase |
| SH07_RS19755 () | 4003122..4003934 | - | 813 | Protein_3735 | acetate/propionate family kinase | - |
| SH07_RS19760 () | 4003960..4005291 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| SH07_RS19765 () | 4005313..4006302 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| SH07_RS19770 () | 4006401..4007339 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| SH07_RS25930 () | 4007654..4007872 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| SH07_RS19780 () | 4008128..4008667 | + | 540 | WP_000675733.1 | hypothetical protein | - |
| SH07_RS19785 () | 4008689..4009876 | + | 1188 | WP_000484600.1 | YhaC family protein | - |
| SH07_RS19790 () | 4010899..4012044 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| SH07_RS19795 () | 4012141..4013031 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| SH07_RS19800 () | 4013061..4013831 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| SH07_RS19805 () | 4013847..4015181 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| SH07_RS19810 () | 4015556..4017127 | + | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| SH07_RS19815 () | 4017276..4017611 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| SH07_RS19820 () | 4017611..4018075 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| SH07_RS19825 () | 4018130..4018939 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| SH07_RS19830 () | 4019188..4020468 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| SH07_RS19835 () | 4020491..4020964 | + | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| SH07_RS19840 () | 4020975..4021346 | + | 372 | Protein_3752 | PTS sugar transporter subunit IIC | - |
| SH07_RS19845 () | 4021342..4021899 | + | 558 | Protein_3753 | amidohydrolase family protein | - |
| SH07_RS19850 () | 4022250..4023404 | + | 1155 | WP_001114869.1 | AgaS family sugar isomerase | - |
| SH07_RS19855 () | 4023417..4024277 | + | 861 | WP_000022766.1 | tagatose-bisphosphate aldolase subunit KbaY | - |
| SH07_RS19860 () | 4024444..4024920 | + | 477 | WP_000203711.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| SH07_RS19865 () | 4024959..4025762 | + | 804 | WP_000544489.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| SH07_RS19870 () | 4025752..4026543 | + | 792 | WP_000534347.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| SH07_RS19875 () | 4026544..4027299 | + | 756 | WP_077782073.1 | galactosamine-6-phosphate isomerase | - |
| SH07_RS19880 () | 4027700..4028284 | + | 585 | WP_001045432.1 | type 1 fimbrial protein | - |
| SH07_RS19885 () | 4028364..4029059 | + | 696 | WP_000044775.1 | hypothetical protein | VF |
| SH07_RS19890 () | 4029088..4031604 | + | 2517 | WP_001355538.1 | fimbrial biogenesis outer membrane usher protein | - |
| SH07_RS19895 () | 4031615..4032706 | + | 1092 | WP_000816992.1 | fimbrial protein | - |
| SH07_RS19900 () | 4032749..4033609 | - | 861 | WP_000809262.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|