MGE detailed information
MGE type: Prophage MGE length: 70576 bp
Accession: NZ_CP010443 Location: 3492126..3562701 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Accession: NZ_CP010443 Location: 3492126..3562701 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH04_RS17220 () | 3487762..3489423 | + | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| SH04_RS17225 () | 3489572..3489913 | + | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| SH04_RS17230 () | 3489975..3490265 | - | 291 | WP_001117838.1 | RnfH family protein | - |
| SH04_RS17235 () | 3490255..3490692 | - | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| SH04_RS17240 () | 3490863..3491345 | + | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| SH04_RS17245 () | 3492126..3493367 | + | 1242 | WP_000101723.1 | hypothetical protein ; Integrase | Integrase |
| SH04_RS17250 () | 3493611..3494567 | - | 957 | WP_000510827.1 | hypothetical protein | - |
| SH04_RS17255 () | 3494611..3494823 | + | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| SH04_RS17260 () | 3494952..3496361 | + | 1410 | WP_000481742.1 | DUF3987 domain-containing protein | - |
| SH04_RS17265 () | 3496514..3497140 | + | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| SH04_RS17270 () | 3497318..3499507 | - | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| SH04_RS17275 () | 3499504..3501120 | - | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| SH04_RS17280 () | 3501480..3501743 | - | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| SH04_RS17285 () | 3501885..3502958 | + | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| SH04_RS17290 () | 3502951..3503322 | + | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| SH04_RS17295 () | 3503677..3504540 | + | 864 | WP_000787597.1 | GTPase family protein | - |
| SH04_RS17300 () | 3504632..3505453 | + | 822 | WP_000197391.1 | DUF945 domain-containing protein | - |
| SH04_RS17305 () | 3505670..3506371 | + | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| SH04_RS17310 () | 3506412..3506648 | + | 237 | WP_001144029.1 | hypothetical protein | - |
| SH04_RS17315 () | 3506648..3507091 | + | 444 | WP_000824222.1 | hypothetical protein | - |
| SH04_RS17320 () | 3507115..3507582 | + | 468 | WP_000702495.1 | hypothetical protein | - |
| SH04_RS17325 () | 3507807..3508121 | - | 315 | WP_000065803.1 | arsenate reductase | - |
| SH04_RS17330 () | 3508134..3509143 | - | 1010 | Protein_3278 | arsenic transporter | - |
| SH04_RS17335 () | 3509285..3510988 | + | 1704 | WP_000896263.1 | hypothetical protein | - |
| SH04_RS24375 () | 3511560..3511783 | + | 224 | Protein_3280 | DUF905 family protein | - |
| SH04_RS17340 () | 3511886..3512344 | + | 459 | WP_000211841.1 | antirestriction protein | - |
| SH04_RS17345 () | 3512353..3512835 | + | 483 | WP_001407480.1 | RadC family protein | - |
| SH04_RS24380 () | 3512844..3513044 | + | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| SH04_RS17350 () | 3513082..3513399 | + | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| SH04_RS17355 () | 3513420..3513749 | + | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| SH04_RS23000 () | 3514113..3518693 | - | 4581 | WP_010723187.1 | hypothetical protein | VF |
| SH04_RS24385 () | 3518758..3518877 | - | 120 | WP_001120794.1 | hypothetical protein | - |
| SH04_RS24395 () | 3519032..3519250 | - | 219 | WP_071524906.1 | recombinase family protein | - |
| SH04_RS25655 () | 3519605..3520978 | - | 1374 | Protein_3289 | DUF5507 domain-containing protein | - |
| SH04_RS25900 () | 3522364..3524616 | + | 2253 | Protein_3290 | hypothetical protein | - |
| SH04_RS17410 () | 3524952..3525929 | + | 978 | WP_000993126.1 | carbon starvation induced protein CsiD | - |
| SH04_RS17415 () | 3525949..3527217 | + | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| SH04_RS17420 () | 3527240..3528688 | + | 1449 | WP_000772831.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| SH04_RS17425 () | 3528702..3529982 | + | 1281 | WP_001087611.1 | hypothetical protein | VF |
| SH04_RS17430 () | 3530220..3531620 | + | 1401 | WP_001295173.1 | GABA permease | - |
| SH04_RS17435 () | 3531641..3532303 | + | 663 | WP_000156811.1 | DNA-binding transcriptional regulator CsiR | - |
| SH04_RS17440 () | 3532304..3532753 | - | 450 | WP_000522415.1 | potassium binding protein Kbp | - |
| SH04_RS17445 () | 3532837..3532995 | - | 159 | WP_000508177.1 | YqaE/Pmp3 family membrane protein | - |
| SH04_RS17450 () | 3533178..3533477 | + | 300 | WP_000137280.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| SH04_RS17455 () | 3533487..3534011 | + | 525 | WP_001229442.1 | thiosulfate sulfurtransferase YgaP | - |
| SH04_RS17460 () | 3534058..3534462 | - | 405 | WP_000115383.1 | DNA-binding protein StpA | - |
| SH04_RS17465 () | 3535131..3535580 | + | 450 | WP_000492656.1 | L-alanine exporter AlaE | - |
| SH04_RS17470 () | 3535617..3535961 | - | 345 | WP_000281320.1 | DUF2002 family protein | - |
| SH04_RS17475 () | 3536113..3536442 | + | 330 | WP_001295174.1 | DUF883 domain-containing protein | - |
| SH04_RS17480 () | 3536690..3536935 | + | 246 | WP_001223227.1 | glutaredoxin-like protein NrdH | - |
| SH04_RS17485 () | 3536932..3537342 | + | 411 | WP_000080947.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| SH04_RS17490 () | 3537315..3539459 | + | 2145 | WP_000246534.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| SH04_RS17495 () | 3539469..3540428 | + | 960 | WP_000777963.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| SH04_RS17500 () | 3540782..3541984 | + | 1203 | WP_000985494.1 | hypothetical protein | VF |
| SH04_RS17505 () | 3541977..3543041 | + | 1065 | WP_000774988.1 | glycine betaine/L-proline ABC transporter permease ProW | - |
| SH04_RS17510 () | 3543099..3544091 | + | 993 | WP_001216525.1 | glycine betaine/L-proline ABC transporter substrate-binding protein ProX | - |
| SH04_RS17515 () | 3544283..3545460 | + | 1178 | Protein_3312 | MFS transporter | - |
| SH04_RS17520 () | 3545584..3546321 | + | 738 | WP_000445651.1 | L-valine exporter subunit YgaZ | - |
| SH04_RS17525 () | 3546311..3546646 | + | 336 | WP_000119763.1 | L-valine transporter subunit YgaH | - |
| SH04_RS17530 () | 3546737..3547267 | + | 531 | WP_000378442.1 | hypothetical protein | VF |
| SH04_RS17535 () | 3547394..3548566 | + | 1173 | WP_001326681.1 | hypothetical protein | VF |
| SH04_RS17540 () | 3548583..3550121 | + | 1539 | WP_001295176.1 | hypothetical protein | VF |
| SH04_RS17545 () | 3550185..3550700 | - | 516 | WP_001130211.1 | hypothetical protein | VF |
| SH04_RS17550 () | 3550850..3552406 | - | 1557 | WP_000611804.1 | glutamate--cysteine ligase | - |
| SH04_RS17555 () | 3552479..3552907 | - | 429 | WP_001287454.1 | DedA family protein | - |
| SH04_RS17560 () | 3552904..3553470 | - | 567 | WP_000273290.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| SH04_RS17595 () | 3554928..3555113 | - | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| SH04_RS17600 () | 3555348..3557978 | - | 2631 | WP_000047184.1 | alanine--tRNA ligase | - |
| SH04_RS17610 () | 3558106..3558606 | - | 501 | WP_000140508.1 | recombination regulator RecX | - |
| SH04_RS25665 () | 3558688..3558855 | - | 168 | WP_148935601.1 | DUF1382 family protein | - |
| SH04_RS17615 () | 3558828..3559012 | - | 185 | Protein_3326 | DUF1317 domain-containing protein | - |
| SH04_RS17625 () | 3559330..3559989 | + | 660 | WP_006286297.1 | hypothetical protein | ARG |
| SH04_RS17630 () | 3560155..3560652 | - | 498 | WP_000132231.1 | nicotinamide-nucleotide amidase | - |
| SH04_RS17635 () | 3560797..3561882 | - | 1086 | WP_001295177.1 | lytic murein transglycosylase B | - |
| SH04_RS17640 () | 3562138..3562701 | + | 564 | WP_000573321.1 | PTS glucitol/sorbitol transporter subunit IIC | - |
| SH04_RS17645 () | 3562698..3563657 | + | 960 | WP_000148878.1 | PTS glucitol/sorbitol transporter subunit IIB | - |
| SH04_RS17650 () | 3563668..3564039 | + | 372 | WP_000216194.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| SH04_RS17655 () | 3564043..3564822 | + | 780 | WP_001077358.1 | sorbitol-6-phosphate dehydrogenase | - |
| SH04_RS17660 () | 3564927..3565286 | + | 360 | WP_000252908.1 | transcriptional regulator GutM | - |
| SH04_RS17665 () | 3565353..3566126 | + | 774 | WP_000804550.1 | glucitol operon DNA-binding transcriptional repressor SrlR | - |
| SH04_RS17670 () | 3566119..3567084 | + | 966 | WP_001287420.1 | arabinose-5-phosphate isomerase GutQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|