MGE detailed information
MGE type: Prophage MGE length: 141048 bp
Accession: NZ_CP010157 Location: 3722646..3863693 Organism: Escherichia coli strain D10 Replicon: chromosome
Accession: NZ_CP010157 Location: 3722646..3863693 Organism: Escherichia coli strain D10 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG43_RS19570 () | 3720748..3721599 | + | 852 | WP_001174468.1 | aldo/keto reductase | - |
| RG43_RS19575 () | 3721626..3722615 | + | 990 | WP_001172276.1 | aldo/keto reductase | - |
| RG43_RS19580 () | 3722646..3723539 | - | 894 | WP_000910706.1 | hypothetical protein | VF |
| RG43_RS19585 () | 3723899..3724141 | + | 243 | WP_001317639.1 | NADH-flavin oxidoreductase/NADH oxidase | - |
| RG43_RS19590 () | 3724622..3724723 | + | 102 | WP_000662258.1 | hypothetical protein | - |
| RG43_RS19595 () | 3725087..3725350 | + | 264 | WP_000803998.1 | type B 50S ribosomal protein L31 | - |
| RG43_RS19600 () | 3725350..3725490 | + | 141 | WP_000866436.1 | type B 50S ribosomal protein L36 | - |
| RG43_RS19605 () | 3725560..3725750 | - | 191 | Protein_3518 | hypothetical protein | - |
| RG43_RS19620 () | 3726574..3727116 | + | 543 | WP_000389022.1 | hypothetical protein | VF |
| RG43_RS19625 () | 3727191..3727778 | + | 588 | WP_000730984.1 | hypothetical protein | VF |
| RG43_RS19630 () | 3727835..3728503 | + | 669 | WP_000716404.1 | hypothetical protein | VF |
| RG43_RS19635 () | 3728529..3731054 | + | 2526 | WP_073507024.1 | hypothetical protein | VF |
| RG43_RS19640 () | 3731044..3732687 | + | 1644 | WP_001265664.1 | hypothetical protein | VF |
| RG43_RS19645 () | 3732656..3733366 | + | 711 | WP_021525526.1 | hypothetical protein | VF |
| RG43_RS19650 () | 3733680..3734009 | + | 330 | WP_032148604.1 | YkgJ family cysteine cluster protein | - |
| RG43_RS19660 () | 3734258..3734872 | - | 615 | WP_001019923.1 | YagU family protein | - |
| RG43_RS28470 () | 3735087..3735272 | - | 186 | WP_000146236.1 | hypothetical protein | - |
| RG43_RS29495 () | 3735321..3735479 | + | 159 | Protein_3528 | integrase | - |
| RG43_RS28475 () | 3735696..3736389 | - | 694 | Protein_3529 | IS1 family transposase | - |
| RG43_RS19685 () | 3736982..3739708 | + | 2727 | Protein_3530 | hypothetical protein | VF |
| RG43_RS19690 () | 3739741..3741354 | - | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| RG43_RS19695 () | 3741385..3741735 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| RG43_RS19700 () | 3741732..3742157 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| RG43_RS19705 () | 3742238..3743653 | + | 1416 | Protein_3534 | hypothetical protein | VF |
| RG43_RS19710 () | 3743809..3744303 | + | 495 | WP_001059463.1 | hypothetical protein | VF |
| RG43_RS19715 () | 3744738..3745076 | - | 339 | WP_000772639.1 | Arm DNA-binding domain-containing protein | - |
| RG43_RS19720 () | 3745515..3745724 | + | 210 | Protein_3537 | IS3 family transposase ISEc48 | Transposase |
| RG43_RS19725 () | 3745766..3746509 | - | 744 | WP_059343318.1 | AraC family transcriptional regulator | - |
| RG43_RS19730 () | 3747046..3747156 | + | 111 | Protein_3539 | IS3 family transposase ISEhe3 | Transposase |
| RG43_RS29500 () | 3748408..3749019 | + | 612 | Protein_3541 | hypothetical protein | - |
| RG43_RS19750 () | 3749470..3750108 | - | 639 | WP_000011690.1 | hypothetical protein | - |
| RG43_RS19755 () | 3750105..3752093 | - | 1989 | WP_059342854.1 | DEAD/DEAH box helicase | - |
| RG43_RS19760 () | 3752647..3753231 | - | 585 | WP_073507026.1 | tail fiber assembly protein | - |
| RG43_RS19765 () | 3753231..3756762 | - | 3532 | Protein_3545 | prophage tail fiber N-terminal domain-containing protein | - |
| RG43_RS19770 () | 3756827..3757426 | - | 600 | WP_073507027.1 | hypothetical protein | VF |
| RG43_RS19775 () | 3757494..3760973 | - | 3480 | WP_073507028.1 | host specificity protein J | - |
| RG43_RS19780 () | 3761034..3761642 | - | 609 | WP_126123293.1 | tail assembly protein | - |
| RG43_RS19785 () | 3761579..3762322 | - | 744 | WP_073507030.1 | C40 family peptidase | - |
| RG43_RS19790 () | 3762328..3763026 | - | 699 | WP_001152385.1 | phage minor tail protein L | - |
| RG43_RS19795 () | 3763036..3763365 | - | 330 | WP_000447248.1 | phage tail protein | - |
| RG43_RS19800 () | 3763365..3766430 | - | 3066 | WP_073507031.1 | phage tail tape measure protein | - |
| RG43_RS19805 () | 3766402..3766731 | - | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| RG43_RS19810 () | 3766740..3767126 | - | 387 | WP_001297778.1 | phage minor tail protein G | - |
| RG43_RS19815 () | 3767187..3767930 | - | 744 | WP_000211099.1 | phage tail protein | - |
| RG43_RS19820 () | 3767942..3768343 | - | 402 | WP_001079398.1 | phage minor tail U family protein | - |
| RG43_RS19825 () | 3768340..3768918 | - | 579 | WP_000677108.1 | phage tail protein | - |
| RG43_RS19830 () | 3768930..3769205 | - | 276 | WP_001283153.1 | DNA breaking-rejoining protein | - |
| RG43_RS19835 () | 3769198..3769521 | - | 324 | WP_001097050.1 | DUF2190 family protein | - |
| RG43_RS19840 () | 3769608..3771635 | - | 2028 | WP_077897614.1 | hypothetical protein | VF |
| RG43_RS19845 () | 3771580..3773088 | - | 1509 | WP_073507033.1 | phage portal protein | - |
| RG43_RS19850 () | 3773088..3773300 | - | 213 | WP_001072975.1 | hypothetical protein | - |
| RG43_RS19855 () | 3773297..3775399 | - | 2103 | WP_073507034.1 | phage terminase large subunit family protein | - |
| RG43_RS19860 () | 3775399..3775893 | - | 495 | WP_000373425.1 | DUF1441 family protein | - |
| RG43_RS29190 () | 3776569..3776721 | - | 153 | WP_032259466.1 | hypothetical protein | - |
| RG43_RS29195 () | 3776709..3777170 | - | 462 | WP_048266675.1 | lysis protein | - |
| RG43_RS19880 () | 3777167..3777781 | - | 615 | WP_001075798.1 | glycoside hydrolase family 19 protein | - |
| RG43_RS19885 () | 3777781..3778062 | - | 282 | WP_000422366.1 | phage holin family protein | - |
| RG43_RS19890 () | 3778049..3778435 | - | 387 | WP_001283169.1 | phage holin family protein | - |
| RG43_RS19895 () | 3778526..3779122 | - | 597 | WP_000220228.1 | hypothetical protein | - |
| RG43_RS19900 () | 3779229..3779807 | - | 579 | WP_000609696.1 | DUF1133 family protein | - |
| RG43_RS19905 () | 3779822..3780811 | - | 990 | WP_001433852.1 | DUF968 domain-containing protein | - |
| RG43_RS19910 () | 3780819..3781616 | - | 798 | WP_073507035.1 | KilA-N domain-containing protein | - |
| RG43_RS19915 () | 3781636..3782025 | - | 390 | WP_000767113.1 | RusA family crossover junction endodeoxyribonuclease | - |
| RG43_RS19920 () | 3782022..3782348 | - | 327 | WP_000210170.1 | LexA family transcriptional regulator | - |
| RG43_RS19925 () | 3782348..3782842 | - | 495 | WP_001758754.1 | PerC family transcriptional regulator | - |
| RG43_RS19930 () | 3782839..3783657 | - | 819 | WP_000061506.1 | helix-turn-helix domain-containing protein | - |
| RG43_RS19935 () | 3783654..3783890 | - | 237 | WP_000933942.1 | hypothetical protein | - |
| RG43_RS19940 () | 3783883..3784719 | - | 837 | WP_059309219.1 | ash family protein | - |
| RG43_RS19945 () | 3784716..3785267 | - | 552 | WP_000521508.1 | hypothetical protein | - |
| RG43_RS19950 () | 3785311..3785511 | - | 201 | WP_000649477.1 | helix-turn-helix domain-containing protein | - |
| RG43_RS19955 () | 3785602..3786276 | + | 675 | WP_000848749.1 | LexA family transcriptional regulator | - |
| RG43_RS19970 () | 3786945..3787307 | + | 363 | WP_000135680.1 | hypothetical protein | - |
| RG43_RS19975 () | 3787373..3788197 | + | 825 | WP_000081270.1 | DUF2303 family protein | - |
| RG43_RS19980 () | 3788325..3788861 | + | 537 | WP_001506964.1 | 5'-deoxynucleotidase | - |
| RG43_RS19985 () | 3788852..3789214 | + | 363 | WP_073507037.1 | hypothetical protein | - |
| RG43_RS19990 () | 3789214..3789519 | + | 306 | WP_000206735.1 | hypothetical protein | - |
| RG43_RS20000 () | 3789746..3790909 | + | 1164 | WP_000051887.1 | hypothetical protein ; Integrase | Integrase |
| RG43_RS20010 () | 3791114..3792367 | - | 1254 | WP_000893310.1 | glutamate-5-semialdehyde dehydrogenase | - |
| RG43_RS20015 () | 3792379..3793482 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| RG43_RS20020 () | 3793771..3794826 | + | 1056 | WP_000749899.1 | phosphoporin PhoE | - |
| RG43_RS20025 () | 3794865..3795266 | - | 402 | WP_000174685.1 | sigma factor-binding protein Crl | - |
| RG43_RS20030 () | 3795324..3796568 | - | 1245 | WP_000189578.1 | esterase FrsA | - |
| - () | 3795984..3796064 | - | 81 | NuclAT_12 | - | - |
| - () | 3795984..3796064 | - | 81 | NuclAT_12 | - | - |
| - () | 3795984..3796064 | - | 81 | NuclAT_12 | - | - |
| - () | 3795984..3796064 | - | 81 | NuclAT_12 | - | - |
| RG43_RS20035 () | 3796660..3797118 | - | 459 | WP_001291991.1 | xanthine phosphoribosyltransferase | - |
| RG43_RS20040 () | 3797379..3798836 | + | 1458 | WP_001293000.1 | cytosol nonspecific dipeptidase | - |
| RG43_RS20045 () | 3798893..3799507 | - | 615 | WP_000602135.1 | peptide chain release factor H | - |
| RG43_RS20050 () | 3799504..3800643 | - | 1140 | WP_000521562.1 | RNA ligase RtcB family protein | - |
| RG43_RS20055 () | 3800833..3801285 | - | 453 | WP_001059897.1 | GNAT family N-acetyltransferase | - |
| RG43_RS20060 () | 3801282..3802337 | - | 1056 | WP_001226161.1 | DNA polymerase IV | - |
| RG43_RS20065 () | 3802408..3803193 | - | 786 | WP_000207550.1 | hypothetical protein | VF |
| RG43_RS20070 () | 3803165..3804877 | + | 1713 | Protein_3601 | hypothetical protein | VF |
| RG43_RS20080 () | 3805152..3805901 | - | 750 | WP_000093934.1 | hypothetical protein | VF |
| RG43_RS20085 () | 3806213..3806953 | + | 741 | WP_001225680.1 | murein L,D-transpeptidase | - |
| RG43_RS20090 () | 3806924..3807691 | - | 768 | WP_001304889.1 | class II glutamine amidotransferase | - |
| RG43_RS20095 () | 3807896..3808474 | - | 579 | WP_000284050.1 | hypothetical protein | VF |
| RG43_RS20100 () | 3808714..3811158 | + | 2445 | WP_000973128.1 | hypothetical protein | VF |
| RG43_RS20105 () | 3811201..3811647 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| RG43_RS20110 () | 3811828..3812598 | + | 771 | WP_001304891.1 | 2-oxoglutaramate amidase | - |
| RG43_RS29200 () | 3812650..3812844 | - | 195 | Protein_3609 | transposase | - |
| RG43_RS20120 () | 3812870..3813142 | - | 273 | Protein_3610 | integrating conjugative element protein | - |
| RG43_RS20130 () | 3813460..3813690 | + | 231 | Protein_3611 | IS630 family transposase ISEc40 | Transposase |
| RG43_RS20155 () | 3815416..3815565 | - | 150 | WP_072146520.1 | hemolysin activation protein | - |
| RG43_RS20170 () | 3816644..3817435 | + | 792 | WP_001608035.1 | hypothetical protein | - |
| RG43_RS20180 () | 3817819..3818025 | + | 207 | WP_001305352.1 | AlpA family transcriptional regulator | - |
| RG43_RS20185 () | 3818113..3818721 | + | 609 | WP_000782654.1 | hypothetical protein | - |
| RG43_RS29650 () | 3819181..3819279 | + | 99 | Protein_3617 | AAA family ATPase | - |
| RG43_RS20210 () | 3820518..3820729 | + | 212 | Protein_3618 | hypothetical protein | - |
| RG43_RS20215 () | 3821254..3821511 | - | 258 | WP_001163787.1 | hypothetical protein | - |
| RG43_RS20220 () | 3821565..3822332 | - | 768 | WP_000016205.1 | hypothetical protein | VF |
| RG43_RS20225 () | 3822329..3823387 | - | 1059 | WP_000217077.1 | hypothetical protein | VF |
| RG43_RS20230 () | 3823406..3824395 | - | 990 | WP_000778018.1 | ABC transporter substrate-binding protein | - |
| RG43_RS20235 () | 3824406..3826571 | - | 2166 | WP_000856947.1 | TonB-dependent receptor | - |
| RG43_RS20240 () | 3827054..3827863 | + | 810 | WP_001305362.1 | hypothetical protein | - |
| RG43_RS20245 () | 3827981..3828622 | - | 642 | WP_000459982.1 | hypothetical protein | - |
| RG43_RS20250 () | 3828946..3829548 | - | 603 | WP_001305361.1 | IS91 family transposase ISMno24 | Transposase |
| RG43_RS20260 () | 3829947..3831047 | + | 1101 | WP_001313577.1 | hypothetical protein | - |
| RG43_RS20265 () | 3831269..3831703 | + | 435 | WP_001069809.1 | hypothetical protein | - |
| RG43_RS20270 () | 3831921..3834317 | + | 2397 | WP_000544741.1 | dynamin family protein | - |
| RG43_RS20275 () | 3834314..3835219 | + | 906 | WP_000203555.1 | chemotaxis protein | - |
| RG43_RS20280 () | 3835216..3836286 | + | 1071 | WP_000102646.1 | hypothetical protein | VF |
| RG43_RS20285 () | 3836376..3836882 | + | 507 | WP_000238685.1 | hypothetical protein | - |
| RG43_RS20290 () | 3836938..3837567 | + | 630 | WP_000680181.1 | hypothetical protein | - |
| RG43_RS20300 () | 3838002..3838454 | + | 453 | WP_000682723.1 | hypothetical protein | - |
| RG43_RS20305 () | 3838572..3838805 | + | 234 | WP_001213776.1 | DUF905 family protein | - |
| RG43_RS20315 () | 3838905..3839726 | + | 822 | WP_001234359.1 | DUF945 domain-containing protein | - |
| RG43_RS20320 () | 3839726..3839971 | + | 246 | WP_001164966.1 | hypothetical protein | - |
| RG43_RS20325 () | 3840065..3840538 | + | 474 | WP_001313575.1 | antirestriction protein | - |
| RG43_RS20330 () | 3840554..3841030 | + | 477 | WP_001313574.1 | RadC family protein | - |
| RG43_RS20335 () | 3841093..3841314 | + | 222 | WP_000692315.1 | DUF987 domain-containing protein | - |
| RG43_RS20340 () | 3841333..3841977 | + | 645 | WP_000086759.1 | hypothetical protein | - |
| RG43_RS20345 () | 3842027..3842401 | + | 375 | WP_001285481.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| RG43_RS20350 () | 3842448..3842825 | + | 378 | WP_000854730.1 | TA system toxin CbtA family protein | Toxin Detail |
| RG43_RS20355 () | 3842822..3843314 | + | 493 | Protein_3644 | hypothetical protein | - |
| RG43_RS20365 () | 3843393..3844381 | - | 989 | Protein_3645 | IS630 family transposase IS630 | Transposase |
| RG43_RS20375 () | 3844529..3846122 | - | 1594 | Protein_3646 | IS66 family transposase ISEc47 | Transposase |
| RG43_RS20380 () | 3846153..3846503 | - | 351 | WP_000624707.1 | IS66 family transposase IS682 | Transposase |
| RG43_RS20385 () | 3846500..3846791 | - | 292 | Protein_3648 | IS66 family transposase ISEc43 | Transposase |
| RG43_RS29210 () | 3847109..3847966 | + | 858 | Protein_3649 | DUF4942 domain-containing protein | - |
| RG43_RS20415 () | 3848296..3849027 | - | 732 | WP_001308374.1 | DNA polymerase III subunit epsilon | - |
| RG43_RS20420 () | 3849092..3849559 | + | 468 | WP_000917878.1 | ribonuclease HI | - |
| RG43_RS20425 () | 3849556..3850278 | - | 723 | WP_001295200.1 | class I SAM-dependent methyltransferase | - |
| RG43_RS20430 () | 3850312..3851067 | + | 756 | WP_001052735.1 | hydroxyacylglutathione hydrolase | - |
| RG43_RS20435 () | 3851139..3852497 | + | 1359 | WP_000644685.1 | hypothetical protein | VF |
| RG43_RS20440 () | 3852546..3853316 | - | 771 | WP_000211720.1 | class I SAM-dependent methyltransferase | - |
| RG43_RS20445 () | 3853394..3854194 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| RG43_RS20450 () | 3854435..3855349 | + | 915 | WP_000648565.1 | hypothetical protein | VF |
| RG43_RS20455 () | 3855346..3856149 | - | 804 | WP_000997016.1 | 2,5-didehydrogluconate reductase DkgB | - |
| RG43_RS20490 () | 3861902..3862474 | - | 573 | WP_001140178.1 | hypothetical protein | VF |
| RG43_RS20495 () | 3862662..3863693 | + | 1032 | WP_000594009.1 | hypothetical protein | VF |
| RG43_RS20500 () | 3863686..3864339 | + | 654 | WP_001294610.1 | methionine ABC transporter permease MetI | - |
| RG43_RS20505 () | 3864379..3865194 | + | 816 | WP_000874226.1 | methionine ABC transporter substrate-binding lipoprotein MetQ | - |
| RG43_RS20510 () | 3865312..3865716 | + | 405 | WP_001202329.1 | Rcs stress response system protein RcsF | - |
| RG43_RS20515 () | 3865713..3866420 | + | 708 | WP_000094007.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
| RG43_RS20520 () | 3866531..3868249 | + | 1719 | WP_001260694.1 | proline--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|