MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 114159 bp
Accession: NZ_CP010144 Location: 1..114159 Organism: Escherichia coli strain D4 Replicon: plasmid A
Accession: NZ_CP010144 Location: 1..114159 Organism: Escherichia coli strain D4 Replicon: plasmid A
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG37_RS27085 () | 1..900 | - | 900 | Protein_0 | tail fiber protein | - |
| RG37_RS27230 () | 1037..1720 | + | 684 | WP_162733458.1 | hypothetical protein | - |
| RG37_RS25450 () | 2356..7083 | - | 4728 | WP_072652154.1 | DUF1983 domain-containing protein | - |
| RG37_RS25455 () | 7101..7694 | - | 594 | WP_001293195.1 | tail assembly protein | - |
| RG37_RS25460 () | 7682..8479 | - | 798 | WP_001405045.1 | C40 family peptidase | - |
| RG37_RS25465 () | 8472..9170 | - | 699 | WP_000511445.1 | phage minor tail protein L | - |
| RG37_RS25470 () | 9253..9588 | - | 336 | WP_000442113.1 | phage tail protein | - |
| RG37_RS25475 () | 9631..14208 | - | 4578 | WP_073503551.1 | tape measure protein | - |
| RG37_RS25480 () | 14216..14440 | - | 225 | WP_000952686.1 | hypothetical protein | - |
| RG37_RS25485 () | 14566..14883 | - | 318 | WP_000163860.1 | hypothetical protein | - |
| RG37_RS25490 () | 14945..15691 | - | 747 | WP_000072375.1 | Ig domain-containing protein | - |
| RG37_RS25495 () | 15766..16149 | - | 384 | WP_000469440.1 | minor capsid protein | - |
| RG37_RS25500 () | 16151..16624 | - | 474 | WP_000523628.1 | hypothetical protein | - |
| RG37_RS25505 () | 16615..16959 | - | 345 | WP_001027663.1 | hypothetical protein | - |
| RG37_RS25510 () | 17039..17872 | - | 834 | WP_000057117.1 | hypothetical protein | - |
| RG37_RS25515 () | 17872..18306 | - | 435 | WP_000801186.1 | hypothetical protein | - |
| RG37_RS25520 () | 18351..19271 | - | 921 | WP_021520523.1 | Ig domain-containing protein | - |
| RG37_RS25525 () | 19345..20220 | - | 876 | WP_001130339.1 | hypothetical protein | - |
| RG37_RS25530 () | 20246..21133 | - | 888 | WP_073503552.1 | hypothetical protein | - |
| RG37_RS25535 () | 21155..22729 | - | 1575 | WP_073503553.1 | phage portal protein | - |
| RG37_RS25540 () | 22756..24012 | - | 1257 | WP_001007299.1 | phage terminase large subunit | - |
| RG37_RS25545 () | 24012..24644 | - | 633 | WP_000215413.1 | hypothetical protein | - |
| RG37_RS25550 () | 24841..25107 | - | 267 | WP_000176292.1 | hypothetical protein | - |
| RG37_RS25555 () | 25117..26007 | - | 891 | WP_000129633.1 | hypothetical protein | - |
| RG37_RS25560 () | 26004..26669 | - | 666 | WP_001717191.1 | ATP-binding cassette domain-containing protein | - |
| RG37_RS25565 () | 26666..27334 | - | 669 | WP_000161986.1 | ParB/Srx family N-terminal domain-containing protein | - |
| RG37_RS25570 () | 27334..28014 | - | 681 | WP_000382660.1 | ParB N-terminal domain-containing protein | - |
| RG37_RS25575 () | 28097..29656 | + | 1560 | WP_039052494.1 | DEAD/DEAH box helicase | - |
| RG37_RS25580 () | 29659..29937 | + | 279 | WP_021520518.1 | hypothetical protein | - |
| RG37_RS25585 () | 30112..30711 | + | 600 | WP_024189780.1 | hypothetical protein | - |
| RG37_RS25590 () | 30708..31229 | + | 522 | WP_021520104.1 | hypothetical protein | - |
| RG37_RS25595 () | 31527..32177 | + | 651 | WP_021520516.1 | hypothetical protein | - |
| RG37_RS25600 () | 32225..32455 | + | 231 | WP_000470243.1 | hypothetical protein | - |
| RG37_RS25610 () | 33071..33553 | - | 483 | WP_001009193.1 | hypothetical protein | - |
| RG37_RS25615 () | 33904..34278 | - | 375 | WP_021512333.1 | hypothetical protein | - |
| RG37_RS25620 () | 34396..34791 | - | 396 | WP_073503554.1 | hypothetical protein | - |
| RG37_RS25625 () | 34918..35229 | - | 312 | WP_000749406.1 | hypothetical protein | - |
| RG37_RS25630 () | 35383..35712 | - | 330 | WP_016608024.1 | hypothetical protein | - |
| RG37_RS25640 () | 37288..37686 | - | 399 | WP_032252448.1 | hypothetical protein | - |
| RG37_RS25650 () | 37981..38223 | - | 243 | WP_032252493.1 | DUF1380 family protein | - |
| RG37_RS25655 () | 38383..40416 | - | 2034 | WP_001717177.1 | methionine--tRNA ligase | - |
| RG37_RS25660 () | 40574..41674 | + | 1101 | WP_000004356.1 | iron-sulfur cluster carrier protein ApbC | - |
| RG37_RS25665 () | 41711..42100 | - | 390 | WP_000506720.1 | DNA repair protein | - |
| RG37_RS25670 () | 42199..42450 | - | 252 | WP_001755493.1 | DNA polymerase III subunit theta | - |
| RG37_RS25680 () | 42809..44365 | + | 1557 | WP_001755496.1 | type I restriction-modification system subunit M | - |
| RG37_RS25685 () | 44362..45609 | + | 1248 | WP_001293038.1 | restriction endonuclease subunit S | - |
| RG37_RS25690 () | 45731..48847 | + | 3117 | WP_000149672.1 | HsdR family type I site-specific deoxyribonuclease | - |
| RG37_RS25695 () | 48906..49382 | - | 477 | WP_001090450.1 | hypothetical protein | - |
| RG37_RS25700 () | 49486..50100 | - | 615 | WP_000467663.1 | hypothetical protein | - |
| RG37_RS25710 () | 50439..51008 | - | 570 | WP_000335122.1 | hypothetical protein | - |
| RG37_RS25715 () | 51148..51306 | - | 159 | WP_000893471.1 | DUF3927 family protein | - |
| RG37_RS25720 () | 51306..51731 | - | 426 | WP_000900262.1 | tellurite/colicin resistance protein | - |
| RG37_RS25725 () | 51825..52013 | - | 189 | WP_001104328.1 | hypothetical protein | - |
| RG37_RS25730 () | 52023..52517 | - | 495 | WP_001348724.1 | hypothetical protein | - |
| RG37_RS25735 () | 52666..53256 | - | 591 | WP_000208893.1 | ribonuclease HI | - |
| RG37_RS25740 () | 53843..54073 | - | 231 | WP_000121544.1 | hypothetical protein | - |
| RG37_RS25745 () | 54260..54853 | - | 594 | WP_073503556.1 | phage N-6-adenine-methyltransferase | - |
| RG37_RS25750 () | 55037..55846 | - | 810 | WP_000099880.1 | hypothetical protein | - |
| RG37_RS25755 () | 56005..56562 | - | 558 | WP_016607532.1 | 3'-5' exonuclease | - |
| RG37_RS25760 () | 56572..56991 | - | 420 | WP_001718079.1 | hypothetical protein | - |
| RG37_RS25765 () | 57053..57697 | - | 645 | WP_000386469.1 | AAA family ATPase | - |
| RG37_RS25770 () | 57697..58173 | - | 477 | WP_073503557.1 | dihydrofolate reductase | - |
| RG37_RS25775 () | 58170..58571 | - | 402 | WP_000289389.1 | hypothetical protein | - |
| RG37_RS25780 () | 58585..59688 | - | 1104 | WP_073503558.1 | thymidylate synthase | - |
| RG37_RS25785 () | 59860..60729 | - | 870 | WP_073503559.1 | phosphoribosyl-ATP pyrophosphohydrolase | - |
| RG37_RS25790 () | 60807..61949 | - | 1143 | WP_000122502.1 | ribonucleotide-diphosphate reductase subunit beta | - |
| RG37_RS25795 () | 62056..64371 | - | 2316 | WP_073503560.1 | ribonucleoside-diphosphate reductase subunit alpha | - |
| RG37_RS25800 () | 64445..65014 | - | 570 | WP_000037962.1 | hypothetical protein | - |
| RG37_RS25805 () | 65024..65767 | - | 744 | WP_053902540.1 | hypothetical protein | - |
| RG37_RS25810 () | 65757..67673 | - | 1917 | WP_000670359.1 | AAA family ATPase | - |
| RG37_RS25820 () | 67903..68988 | - | 1086 | WP_000174803.1 | metallophosphoesterase | - |
| RG37_RS25825 () | 69243..69887 | - | 645 | WP_000364573.1 | hypothetical protein | - |
| RG37_RS25830 () | 70089..71303 | + | 1215 | WP_162739249.1 | RepB family plasmid replication initiator protein | - |
| RG37_RS25835 () | 71883..72095 | - | 213 | WP_073503561.1 | hypothetical protein | - |
| RG37_RS25840 () | 72095..72430 | - | 336 | WP_000644408.1 | hypothetical protein | - |
| RG37_RS25850 () | 72646..72921 | - | 276 | WP_073503562.1 | hypothetical protein | - |
| RG37_RS25855 () | 72977..73402 | - | 426 | WP_000125192.1 | hypothetical protein | - |
| RG37_RS25860 () | 73482..75821 | - | 2340 | WP_073503563.1 | recombinase RecA | - |
| RG37_RS25865 () | 75824..76090 | - | 267 | WP_000920225.1 | hypothetical protein | - |
| RG37_RS25870 () | 76090..77034 | - | 945 | WP_001717299.1 | 5'-3' exonuclease SAM fold family protein | - |
| RG37_RS25875 () | 77095..78123 | - | 1029 | WP_025670478.1 | hypothetical protein | - |
| RG37_RS25880 () | 78241..78672 | - | 432 | WP_001090697.1 | hypothetical protein | - |
| RG37_RS25890 () | 79212..79775 | + | 564 | WP_001240351.1 | hypothetical protein | - |
| RG37_RS25895 () | 80105..80320 | + | 216 | WP_000066497.1 | cold shock protein CspG | - |
| RG37_RS25900 () | 80624..84130 | - | 3507 | WP_073503564.1 | DNA polymerase III subunit alpha | - |
| RG37_RS25910 () | 84311..85546 | - | 1236 | WP_073503565.1 | MoxR family ATPase | - |
| RG37_RS25915 () | 85642..87750 | - | 2109 | WP_073503566.1 | cobalamin biosynthesis protein CobT | - |
| RG37_RS25920 () | 87849..88061 | - | 213 | WP_024269779.1 | hypothetical protein | - |
| RG37_RS25925 () | 88313..88699 | + | 387 | WP_001282577.1 | helix-turn-helix domain-containing protein | - |
| RG37_RS25930 () | 88694..89797 | - | 1104 | WP_000797845.1 | site-specific integrase | - |
| RG37_RS25935 () | 90008..90253 | - | 246 | WP_000156433.1 | GrxA family glutaredoxin | - |
| RG37_RS25940 () | 90250..90600 | - | 351 | WP_025670480.1 | hypothetical protein | - |
| RG37_RS25960 () | 92254..92544 | - | 291 | WP_000067985.1 | hypothetical protein | - |
| RG37_RS25970 () | 92902..94224 | - | 1323 | WP_073503567.1 | DNA ligase | - |
| RG37_RS27235 () | 94259..94734 | - | 476 | Protein_94 | hypothetical protein | - |
| RG37_RS25980 () | 94815..95627 | - | 813 | WP_032187677.1 | hypothetical protein | - |
| RG37_RS25985 () | 95723..96093 | - | 371 | Protein_96 | transposase | - |
| RG37_RS25995 () | 96292..97274 | + | 983 | Protein_97 | IS3 family transposase ISEc36 | Transposase |
| RG37_RS26000 () | 97416..97967 | + | 552 | WP_073503569.1 | fimbrial protein YehD | - |
| RG37_RS26005 () | 98023..98703 | + | 681 | WP_032187672.1 | putative fimbrial chaperone YehC | VF |
| RG37_RS26010 () | 98721..101207 | + | 2487 | WP_073503570.1 | Outer membrane usher protein YehB | VF |
| RG37_RS26015 () | 101219..102238 | + | 1020 | WP_073503571.1 | type 1 fimbrial protein | - |
| RG37_RS26020 () | 102423..102644 | + | 222 | WP_001603498.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| RG37_RS26025 () | 102644..103021 | + | 378 | WP_053291281.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| RG37_RS26030 () | 103155..104270 | - | 1116 | WP_032187668.1 | DNA primase | - |
| RG37_RS26035 () | 104427..105767 | - | 1341 | WP_073503572.1 | AAA family ATPase | - |
| RG37_RS26040 () | 105828..106553 | - | 726 | WP_073503573.1 | hypothetical protein | - |
| RG37_RS26045 () | 106836..107603 | + | 768 | WP_000342417.1 | hypothetical protein | - |
| RG37_RS26050 () | 107656..108009 | - | 354 | WP_160378290.1 | hypothetical protein | - |
| RG37_RS26055 () | 108015..108683 | - | 669 | WP_000161228.1 | AAA family ATPase | - |
| RG37_RS26060 () | 109002..109271 | + | 270 | WP_001351987.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| RG37_RS26065 () | 109279..109800 | + | 522 | WP_000072677.1 | GNAT family N-acetyltransferase | Toxin Detail |
| RG37_RS26075 () | 109969..110220 | - | 252 | WP_000901559.1 | hypothetical protein | - |
| RG37_RS26080 () | 110222..110914 | - | 693 | WP_032084069.1 | membrane protein | - |
| RG37_RS26085 () | 110928..111251 | - | 324 | WP_032084070.1 | hypothetical protein | - |
| RG37_RS26090 () | 111326..112108 | - | 783 | WP_072647505.1 | receptor-recognizing protein | - |
| RG37_RS27110 () | 112174..114156 | - | 1983 | Protein_116 | tail fiber domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|