MGE detailed information
MGE type: Prophage MGE length: 39600 bp
Accession: NZ_CP010143 Location: 1834705..1874304 Organism: Escherichia coli strain D4 Replicon: chromosome
Accession: NZ_CP010143 Location: 1834705..1874304 Organism: Escherichia coli strain D4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG37_RS27285 () | 1830694..1830741 | + | 48 | WP_211180494.1 | protein YnaN | - |
| RG37_RS09685 () | 1830755..1831738 | + | 984 | WP_073503286.1 | zinc transporter ZntB | - |
| RG37_RS09695 () | 1832216..1833589 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| RG37_RS09700 () | 1833718..1834653 | - | 936 | WP_073503287.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| RG37_RS09705 () | 1834705..1835940 | - | 1236 | WP_000040852.1 | site-specific integrase | - |
| RG37_RS09710 () | 1835942..1836157 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| RG37_RS09715 () | 1836236..1836445 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 1836261..1836439 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1836261..1836439 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1836261..1836439 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1836261..1836439 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| RG37_RS09720 () | 1836438..1836632 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| RG37_RS09725 () | 1836689..1837498 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| RG37_RS09730 () | 1837491..1840091 | - | 2601 | WP_001532611.1 | exodeoxyribonuclease VIII | - |
| RG37_RS09735 () | 1840193..1840468 | - | 276 | WP_000632297.1 | protein RacC | - |
| RG37_RS09740 () | 1840543..1840713 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| RG37_RS09745 () | 1840713..1840934 | - | 222 | WP_000560223.1 | killing protein KilR | - |
| RG37_RS09755 () | 1841376..1841864 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| RG37_RS09760 () | 1841861..1842016 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| RG37_RS09770 () | 1842470..1842946 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| RG37_RS09775 () | 1843070..1843366 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| RG37_RS09780 () | 1843389..1843810 | + | 422 | Protein_1740 | hypothetical protein | - |
| RG37_RS09785 () | 1843823..1844680 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| RG37_RS09790 () | 1844687..1845433 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| RG37_RS09795 () | 1845456..1846217 | + | 762 | WP_073503288.1 | DUF1627 domain-containing protein | - |
| RG37_RS09800 () | 1846233..1846610 | + | 378 | WP_001141106.1 | DUF977 family protein | - |
| RG37_RS09805 () | 1846901..1848583 | + | 1683 | WP_073503289.1 | DUF262 domain-containing HNH endonuclease family protein | - |
| RG37_RS09810 () | 1849111..1850160 | + | 1050 | WP_000505828.1 | tetratricopeptide repeat protein | - |
| RG37_RS09815 () | 1850735..1850890 | + | 156 | WP_021554378.1 | type I toxin-antitoxin system Hok family toxin | - |
| RG37_RS09825 () | 1851084..1852196 | - | 1113 | WP_001300563.1 | IS4-like element IS421 family transposase | - |
| RG37_RS09835 () | 1852703..1853302 | + | 600 | WP_000940319.1 | DUF1367 family protein | - |
| RG37_RS09840 () | 1853302..1853592 | + | 291 | WP_000247762.1 | DUF1364 domain-containing protein | - |
| RG37_RS09845 () | 1853589..1854131 | + | 543 | WP_000640161.1 | DUF1133 family protein | - |
| RG37_RS09850 () | 1855176..1855604 | + | 429 | WP_073503291.1 | cell envelope integrity protein TolA | - |
| RG37_RS09855 () | 1855776..1856150 | + | 375 | WP_001348108.1 | hypothetical protein | - |
| RG37_RS09860 () | 1856402..1856617 | + | 216 | WP_000839565.1 | phage lysis protein EssD | - |
| RG37_RS09865 () | 1856617..1857114 | + | 498 | WP_001135280.1 | lysozyme RrrD | - |
| RG37_RS26335 () | 1857331..1857516 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| RG37_RS09875 () | 1857713..1859170 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| RG37_RS09885 () | 1859308..1860099 | + | 792 | WP_016232661.1 | ParB/Srx family N-terminal domain-containing protein | - |
| RG37_RS09890 () | 1860092..1861024 | + | 933 | WP_001742940.1 | hypothetical protein | - |
| RG37_RS09895 () | 1860960..1861211 | + | 252 | WP_187649179.1 | hypothetical protein | - |
| RG37_RS09900 () | 1861215..1862309 | + | 1095 | WP_073503294.1 | terminase small subunit | - |
| RG37_RS09905 () | 1862290..1863591 | + | 1302 | WP_073503295.1 | terminase family protein | - |
| RG37_RS09910 () | 1863594..1864694 | + | 1101 | Protein_1763 | DUF4055 domain-containing protein | - |
| RG37_RS09915 () | 1864778..1865182 | + | 405 | WP_000839179.1 | IS66 family insertion sequence hypothetical protein | - |
| RG37_RS09920 () | 1865179..1865526 | + | 348 | WP_000612626.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| RG37_RS09925 () | 1865575..1867112 | + | 1538 | Protein_1766 | IS66-like element ISEc22 family transposase | - |
| RG37_RS09935 () | 1867151..1867585 | - | 435 | Protein_1767 | baseplate protein | - |
| RG37_RS09940 () | 1867582..1868910 | - | 1329 | WP_149026213.1 | DNA circularization N-terminal domain-containing protein | - |
| RG37_RS09945 () | 1868971..1870806 | - | 1836 | WP_073503187.1 | phage tail tape measure protein | - |
| RG37_RS26340 () | 1871054..1872048 | + | 995 | Protein_1770 | IS3 family transposase | - |
| RG37_RS26345 () | 1872035..1873029 | - | 995 | Protein_1771 | IS3 family transposase | - |
| RG37_RS09985 () | 1873053..1873616 | + | 564 | WP_073503297.1 | tail fiber assembly protein | - |
| RG37_RS09990 () | 1873714..1874304 | - | 591 | WP_000086527.1 | recombinase family protein | - |
| RG37_RS09995 () | 1874621..1874854 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| RG37_RS26810 () | 1874923..1875036 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| RG37_RS27145 () | 1875376..1875549 | + | 174 | WP_001157925.1 | hypothetical protein | - |
| RG37_RS10000 () | 1875815..1876249 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| RG37_RS10005 () | 1876390..1877523 | - | 1134 | WP_073503298.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|