MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 70169 bp
Accession: NZ_CP010022 Location: 1..70169 Organism: Yersinia pestis str. Pestoides B Replicon: plasmid pCD
Accession: NZ_CP010022 Location: 1..70169 Organism: Yersinia pestis str. Pestoides B Replicon: plasmid pCD
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH60_RS00675 () | 17..898 | - | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| CH60_RS00680 () | 1096..2415 | + | 1320 | WP_002212955.1 | putative ATP synthase YscN | VF |
| CH60_RS00685 () | 2412..2876 | + | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| CH60_RS00690 () | 2876..4243 | + | 1368 | WP_002212950.1 | hypothetical protein | VF |
| CH60_RS00695 () | 4240..5163 | + | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| CH60_RS00700 () | 5160..5813 | + | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| CH60_RS00705 () | 5815..6081 | + | 267 | WP_002212945.1 | hypothetical protein | VF |
| CH60_RS00710 () | 6078..6863 | + | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| CH60_RS00715 () | 6863..7927 | + | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| CH60_RS00720 () | 8503..8898 | + | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| CH60_RS00725 () | 9022..9837 | + | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| CH60_RS00730 () | 9916..10014 | + | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| CH60_RS00735 () | 10240..10653 | + | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| CH60_RS00740 () | 10659..12482 | + | 1824 | WP_002212923.1 | Yop proteins translocation protein C | VF |
| CH60_RS00745 () | 12479..13738 | + | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| CH60_RS00750 () | 13735..13935 | + | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| CH60_RS00755 () | 13936..14199 | + | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| CH60_RS00760 () | 14201..14548 | + | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| CH60_RS00765 () | 14545..15042 | + | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| CH60_RS00770 () | 15043..15390 | + | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| CH60_RS00775 () | 15397..16131 | + | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| CH60_RS00780 () | 16131..16760 | + | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| CH60_RS00785 () | 16706..17371 | + | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| CH60_RS00790 () | 17596..17943 | + | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| CH60_RS23740 () | 18491..19520 | + | 1030 | Protein_25 | IS3 family transposase | - |
| CH60_RS22355 () | 19539..19811 | + | 273 | Protein_26 | transposase | - |
| CH60_RS00810 () | 20032..21438 | - | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| CH60_RS00815 () | 21721..21954 | - | 234 | Protein_28 | transposase domain-containing protein | - |
| CH60_RS00820 () | 21957..22535 | + | 579 | Protein_29 | IS3 family transposase ISYpe1 | Transposase |
| CH60_RS00825 () | 23150..23986 | - | 837 | WP_002231152.1 | Effector protein YopJ | VF |
| CH60_RS00830 () | 24382..26580 | - | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| CH60_RS00835 () | 26588..27037 | - | 450 | WP_002229809.1 | hypothetical protein | VF |
| CH60_RS23745 () | 27293..27605 | - | 313 | Protein_33 | IS3 family transposase ISKpn37 | Transposase |
| CH60_RS22370 () | 27783..28022 | - | 240 | WP_002213291.1 | hypothetical protein | - |
| CH60_RS00845 () | 29195..30073 | - | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| CH60_RS00850 () | 30054..30128 | - | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| CH60_RS00855 () | 30370..30624 | - | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| CH60_RS00860 () | 30762..31010 | - | 249 | WP_002233137.1 | Phospholipase D | VF |
| CH60_RS22380 () | 31136..31444 | + | 309 | Protein_39 | DDE-type integrase/transposase/recombinase | - |
| CH60_RS24155 () | 31427..31834 | - | 408 | WP_002231153.1 | IS3 family transposase ISKpn37 | Transposase |
| CH60_RS00870 () | 31858..32175 | - | 318 | WP_002213244.1 | IS3 family transposase ISKpn37 | Transposase |
| CH60_RS00875 () | 32347..32805 | - | 459 | WP_002213246.1 | hypothetical protein | - |
| CH60_RS00880 () | 32874..33143 | + | 270 | WP_042469136.1 | transposase | - |
| CH60_RS24915 () | 33241..33399 | - | 159 | Protein_44 | EamA family transporter | - |
| CH60_RS22390 () | 33469..34772 | - | 1304 | Protein_45 | Adhesin YadA | VF |
| CH60_RS00900 () | 35372..35722 | + | 351 | Protein_46 | IS3 family transposase IS1351 | Transposase |
| CH60_RS00905 () | 35755..38070 | - | 2316 | WP_002213256.1 | Tn3 family transposase ISEc63 | Transposase |
| CH60_RS00910 () | 38234..38785 | + | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| CH60_RS00915 () | 38804..39268 | + | 465 | WP_002224338.1 | hypothetical protein | - |
| CH60_RS00920 () | 39407..39736 | + | 330 | WP_002229829.1 | hypothetical protein | - |
| CH60_RS00930 () | 39836..40935 | + | 1100 | WP_086016640.1 | IS3 family transposase ISYpe1 | Transposase |
| CH60_RS00935 () | 41083..41508 | - | 426 | WP_002213267.1 | hypothetical protein | VF |
| CH60_RS00940 () | 41884..42282 | - | 399 | Protein_53 | IS21 family transposase IS21 | Transposase |
| CH60_RS00945 () | 42282..43361 | - | 1080 | Protein_54 | IS21 family transposase IS21 | Transposase |
| CH60_RS00950 () | 43428..44208 | - | 781 | Protein_55 | IS21 family transposase IS100kyp | Transposase |
| CH60_RS00965 () | 44205..45225 | - | 1021 | Protein_56 | IS21 family transposase IS100kyp | Transposase |
| CH60_RS24165 () | 45308..45409 | - | 102 | Protein_57 | IS21 family transposase IS21 | Transposase |
| CH60_RS00980 () | 45512..46156 | + | 645 | Protein_58 | IS3 family transposase ISYen3 | Transposase |
| CH60_RS00985 () | 46219..46611 | - | 393 | WP_002213403.1 | YopE regulator | VF |
| CH60_RS00990 () | 46805..47464 | + | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| CH60_RS00995 () | 47604..47903 | - | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CH60_RS01000 () | 47896..48138 | - | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| CH60_RS23755 () | 48304..48596 | - | 293 | Protein_63 | IS6 family transposase ISEas1 | Transposase |
| CH60_RS24920 () | 48682..48855 | + | 174 | WP_002213357.1 | hypothetical protein | - |
| CH60_RS24735 () | 49004..49240 | - | 237 | WP_154020274.1 | hypothetical protein | - |
| CH60_RS01010 () | 49400..50365 | - | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| CH60_RS01015 () | 50362..51528 | - | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| CH60_RS24170 () | 52288..53433 | - | 1146 | Protein_68 | IS3 family transposase | - |
| CH60_RS01035 () | 53540..54169 | - | 630 | WP_002229770.1 | hypothetical protein | - |
| CH60_RS23765 () | 54315..54608 | - | 294 | Protein_70 | IS3 family transposase | - |
| CH60_RS01040 () | 54767..55315 | - | 549 | WP_002213007.1 | hypothetical protein | VF |
| CH60_RS01045 () | 55815..56783 | + | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
| CH60_RS01050 () | 56783..57181 | + | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| CH60_RS22435 () | 57587..57868 | + | 282 | Protein_74 | DDE-type integrase/transposase/recombinase | - |
| CH60_RS01060 () | 57886..58305 | + | 420 | WP_002222515.1 | hypothetical protein | - |
| CH60_RS24175 () | 58833..59051 | - | 219 | Protein_76 | IS6 family transposase | - |
| CH60_RS24180 () | 59054..59299 | + | 246 | WP_116442925.1 | transposase | - |
| CH60_RS01065 () | 59181..59498 | + | 318 | Protein_78 | IS256 family transposase ISSod4 | Transposase |
| CH60_RS01070 () | 59541..60644 | - | 1104 | WP_002231149.1 | Outer membrane protein YopM | VF |
| CH60_RS01075 () | 61038..61247 | - | 210 | WP_002229781.1 | hypothetical protein | - |
| CH60_RS23770 () | 61268..61905 | + | 638 | Protein_81 | IS6 family transposase | - |
| CH60_RS01080 () | 62373..63293 | - | 921 | WP_002212987.1 | Protein YopD | VF |
| CH60_RS01085 () | 63312..64517 | - | 1206 | WP_002212985.1 | Protein YopB | VF |
| CH60_RS01090 () | 64495..65001 | - | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| CH60_RS01095 () | 65014..65994 | - | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| CH60_RS01100 () | 65996..66283 | - | 288 | WP_002212973.1 | hypothetical protein | VF |
| CH60_RS01105 () | 66325..66765 | - | 441 | WP_002220918.1 | hypothetical protein | VF |
| CH60_RS01110 () | 66762..68876 | - | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| CH60_RS01115 () | 68863..69207 | - | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| CH60_RS01120 () | 69204..69572 | - | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| CH60_RS01125 () | 69569..69940 | - | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|