MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 68190 bp
Accession: NZ_CP009937 Location: 1..68190 Organism: Yersinia pestis Angola Replicon: plasmid pCD
Accession: NZ_CP009937 Location: 1..68190 Organism: Yersinia pestis Angola Replicon: plasmid pCD
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH56_RS21860 () | 274..825 | - | 552 | WP_012228742.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| CH56_RS21865 () | 989..3304 | + | 2316 | WP_002213256.1 | Tn3 family transposase ISEc63 | Transposase |
| CH56_RS21870 () | 3337..3687 | - | 351 | Protein_3 | IS3 family transposase IS1351 | Transposase |
| CH56_RS23800 () | 4287..5587 | + | 1301 | Protein_4 | Adhesin YadA | VF |
| CH56_RS25330 () | 5660..5818 | + | 159 | Protein_5 | EamA family transporter | - |
| CH56_RS21890 () | 5916..6185 | - | 270 | WP_042469136.1 | transposase | - |
| CH56_RS21895 () | 6254..6712 | + | 459 | WP_002213246.1 | hypothetical protein | - |
| CH56_RS21900 () | 6884..7201 | + | 318 | WP_002213008.1 | IS3 family transposase ISKpn37 | Transposase |
| CH56_RS24965 () | 7225..7632 | + | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| CH56_RS23810 () | 7615..7923 | - | 309 | Protein_10 | DDE-type integrase/transposase/recombinase | - |
| CH56_RS21910 () | 8049..8297 | + | 249 | WP_002233137.1 | Phospholipase D | VF |
| CH56_RS21915 () | 8435..8689 | + | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| CH56_RS21920 () | 8931..9005 | + | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| CH56_RS21925 () | 8986..9864 | + | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| CH56_RS23820 () | 11036..11275 | + | 240 | WP_002213291.1 | hypothetical protein | - |
| CH56_RS23830 () | 11453..11750 | + | 298 | Protein_16 | transposase | - |
| CH56_RS21930 () | 12006..12455 | + | 450 | WP_002229809.1 | hypothetical protein | VF |
| CH56_RS21935 () | 12463..14652 | + | 2190 | WP_002397022.1 | Protein kinase YpkA | VF |
| CH56_RS21940 () | 15048..15914 | + | 867 | WP_002213287.1 | Effector protein YopJ | VF |
| CH56_RS21945 () | 16500..17078 | - | 579 | Protein_20 | IS3 family transposase ISYpe1 | Transposase |
| CH56_RS21950 () | 17081..17314 | + | 234 | Protein_21 | transposase domain-containing protein | - |
| CH56_RS21955 () | 17597..19003 | + | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| CH56_RS23840 () | 19224..19496 | - | 273 | Protein_23 | transposase | - |
| CH56_RS24315 () | 19515..20544 | - | 1030 | Protein_24 | IS3 family transposase | - |
| CH56_RS21975 () | 21092..21439 | - | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| CH56_RS21980 () | 21664..22329 | - | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| CH56_RS21985 () | 22275..22904 | - | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| CH56_RS21990 () | 22904..23638 | - | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| CH56_RS21995 () | 23645..23992 | - | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| CH56_RS22000 () | 23993..24490 | - | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| CH56_RS22005 () | 24487..24834 | - | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| CH56_RS22010 () | 24836..25099 | - | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| CH56_RS22015 () | 25100..25300 | - | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| CH56_RS22020 () | 25297..26556 | - | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| CH56_RS22025 () | 26553..28376 | - | 1824 | WP_002212923.1 | Yop proteins translocation protein C | VF |
| CH56_RS22030 () | 28382..28795 | - | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| CH56_RS22035 () | 29021..29119 | - | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| CH56_RS22040 () | 29198..30013 | - | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| CH56_RS22045 () | 30137..30532 | - | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| CH56_RS22050 () | 31107..32171 | - | 1065 | WP_012228726.1 | Yop proteins translocation protein U | VF |
| CH56_RS22055 () | 32171..32956 | - | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| CH56_RS22060 () | 32953..33219 | - | 267 | WP_002212945.1 | hypothetical protein | VF |
| CH56_RS22065 () | 33221..33874 | - | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| CH56_RS22070 () | 33871..34794 | - | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| CH56_RS22075 () | 34791..36158 | - | 1368 | WP_002212950.1 | hypothetical protein | VF |
| CH56_RS22080 () | 36158..36622 | - | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| CH56_RS22085 () | 36619..37938 | - | 1320 | WP_002212955.1 | putative ATP synthase YscN | VF |
| CH56_RS22090 () | 38136..39017 | + | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| CH56_RS22095 () | 38998..39276 | + | 279 | WP_002212965.1 | Protein TyeA | VF |
| CH56_RS22100 () | 39263..39634 | + | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| CH56_RS22105 () | 39631..39999 | + | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| CH56_RS22110 () | 39996..40340 | + | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| CH56_RS22115 () | 40327..42441 | + | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| CH56_RS22120 () | 42438..42878 | + | 441 | WP_002220918.1 | hypothetical protein | VF |
| CH56_RS22125 () | 42920..43207 | + | 288 | WP_012228713.1 | hypothetical protein | VF |
| CH56_RS22130 () | 43209..44189 | + | 981 | WP_012228705.1 | Virulence-associated V antigen | VF |
| CH56_RS22135 () | 44202..44708 | + | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| CH56_RS22140 () | 44686..45891 | + | 1206 | WP_002212985.1 | Protein YopB | VF |
| CH56_RS22145 () | 45910..46830 | + | 921 | WP_002212987.1 | Protein YopD | VF |
| CH56_RS24320 () | 47298..47935 | - | 638 | Protein_60 | IS6 family transposase | - |
| CH56_RS22155 () | 47956..48165 | + | 210 | WP_002229781.1 | hypothetical protein | - |
| CH56_RS22160 () | 48559..49662 | + | 1104 | WP_002353322.1 | Outer membrane protein YopM | VF |
| CH56_RS22165 () | 49705..50022 | - | 318 | Protein_63 | IS256 family transposase ISSod4 | Transposase |
| CH56_RS24975 () | 49904..50149 | - | 246 | WP_116442925.1 | transposase | - |
| CH56_RS23860 () | 50152..50370 | + | 219 | Protein_65 | IS6 family transposase | - |
| CH56_RS22170 () | 50898..51317 | - | 420 | WP_002222515.1 | hypothetical protein | - |
| CH56_RS23865 () | 51335..51616 | - | 282 | Protein_67 | DDE-type integrase/transposase/recombinase | - |
| CH56_RS22180 () | 52022..52420 | - | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| CH56_RS22185 () | 52420..53388 | - | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
| CH56_RS22190 () | 53888..54436 | + | 549 | WP_002213007.1 | hypothetical protein | VF |
| CH56_RS24325 () | 54595..54888 | + | 294 | Protein_71 | IS3 family transposase | - |
| CH56_RS22195 () | 55034..55663 | + | 630 | WP_002229770.1 | hypothetical protein | - |
| CH56_RS24980 () | 55770..56915 | + | 1146 | Protein_73 | IS3 family transposase | - |
| CH56_RS22215 () | 57675..58841 | + | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| CH56_RS22220 () | 58838..59803 | + | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| CH56_RS25050 () | 59963..60199 | + | 237 | WP_154020274.1 | hypothetical protein | - |
| CH56_RS25335 () | 60348..60521 | - | 174 | WP_002213357.1 | hypothetical protein | - |
| CH56_RS24335 () | 60607..60899 | + | 293 | Protein_78 | IS6 family transposase ISEas1 | Transposase |
| CH56_RS22225 () | 61065..61307 | + | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| CH56_RS22230 () | 61300..61599 | + | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CH56_RS22235 () | 61739..62398 | - | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| CH56_RS22240 () | 62592..62984 | + | 393 | WP_002213403.1 | YopE regulator | VF |
| CH56_RS22245 () | 63047..63691 | - | 645 | Protein_83 | IS3 family transposase ISYen3 | Transposase |
| CH56_RS22255 () | 63794..64966 | + | 1173 | WP_002220893.1 | IS21 family transposase IS21 | Transposase |
| CH56_RS22260 () | 64966..65364 | + | 399 | Protein_85 | IS21 family transposase IS21 | Transposase |
| CH56_RS22265 () | 65741..66166 | + | 426 | WP_002213267.1 | hypothetical protein | VF |
| CH56_RS22280 () | 67513..67842 | - | 330 | WP_002229829.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|