MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 70305 bp
Accession: NZ_CP009783 Location: 1..70305 Organism: Yersinia pestis strain El Dorado Replicon: plasmid pCD
Accession: NZ_CP009783 Location: 1..70305 Organism: Yersinia pestis strain El Dorado Replicon: plasmid pCD
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH46_RS22755 () | 737..1018 | + | 282 | Protein_1 | DDE-type integrase/transposase/recombinase | - |
| CH46_RS00060 () | 1036..1455 | + | 420 | WP_002222515.1 | hypothetical protein | - |
| CH46_RS24730 () | 1983..2201 | - | 219 | Protein_3 | IS6 family transposase | - |
| CH46_RS24735 () | 2204..2449 | + | 246 | WP_116442925.1 | transposase | - |
| CH46_RS00065 () | 2331..2648 | + | 318 | Protein_5 | IS256 family transposase ISSod4 | Transposase |
| CH46_RS00070 () | 2691..3920 | - | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| CH46_RS00075 () | 4314..4523 | - | 210 | WP_002229781.1 | hypothetical protein | - |
| CH46_RS24290 () | 4544..5181 | + | 638 | Protein_8 | IS6 family transposase | - |
| CH46_RS00080 () | 5649..6569 | - | 921 | WP_002212987.1 | Protein YopD | VF |
| CH46_RS00085 () | 6588..7793 | - | 1206 | WP_002212985.1 | Protein YopB | VF |
| CH46_RS00090 () | 7771..8277 | - | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| CH46_RS00095 () | 8290..9270 | - | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| CH46_RS00100 () | 9272..9559 | - | 288 | WP_002212973.1 | hypothetical protein | VF |
| CH46_RS00105 () | 9601..10041 | - | 441 | WP_002220918.1 | hypothetical protein | VF |
| CH46_RS00110 () | 10038..12152 | - | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| CH46_RS00115 () | 12139..12483 | - | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| CH46_RS00120 () | 12480..12848 | - | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| CH46_RS00125 () | 12845..13216 | - | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| CH46_RS00130 () | 13203..13481 | - | 279 | WP_002212965.1 | Protein TyeA | VF |
| CH46_RS00135 () | 13462..14343 | - | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| CH46_RS00140 () | 14541..15860 | + | 1320 | WP_002212955.1 | putative ATP synthase YscN | VF |
| CH46_RS00145 () | 15857..16321 | + | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| CH46_RS00150 () | 16321..17688 | + | 1368 | WP_002212950.1 | hypothetical protein | VF |
| CH46_RS00155 () | 17685..18608 | + | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| CH46_RS00160 () | 18605..19258 | + | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| CH46_RS00165 () | 19260..19526 | + | 267 | WP_002212945.1 | hypothetical protein | VF |
| CH46_RS00170 () | 19523..20308 | + | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| CH46_RS00175 () | 20308..21372 | + | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| CH46_RS00180 () | 21948..22343 | + | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| CH46_RS00185 () | 22467..23282 | + | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| CH46_RS00190 () | 23361..23459 | + | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| CH46_RS00195 () | 23685..24098 | + | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| CH46_RS00200 () | 24104..25927 | + | 1824 | WP_002212923.1 | Yop proteins translocation protein C | VF |
| CH46_RS00205 () | 25924..27183 | + | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| CH46_RS00210 () | 27180..27380 | + | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| CH46_RS00215 () | 27381..27644 | + | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| CH46_RS00220 () | 27646..27993 | + | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| CH46_RS00225 () | 27990..28487 | + | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| CH46_RS00230 () | 28488..28835 | + | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| CH46_RS00235 () | 28842..29576 | + | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| CH46_RS00240 () | 29576..30205 | + | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| CH46_RS00245 () | 30151..30816 | + | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| CH46_RS00250 () | 31041..31388 | + | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| CH46_RS24295 () | 31936..32965 | + | 1030 | Protein_44 | IS3 family transposase | - |
| CH46_RS22785 () | 32984..33256 | + | 273 | Protein_45 | transposase | - |
| CH46_RS00270 () | 33477..34883 | - | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| CH46_RS00275 () | 35166..35399 | - | 234 | Protein_47 | transposase domain-containing protein | - |
| CH46_RS00280 () | 35402..35980 | + | 579 | Protein_48 | IS3 family transposase ISYpe1 | Transposase |
| CH46_RS00285 () | 36566..37432 | - | 867 | WP_002213287.1 | Effector protein YopJ | VF |
| CH46_RS00290 () | 37828..40026 | - | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| CH46_RS00295 () | 40034..40483 | - | 450 | WP_002229809.1 | hypothetical protein | VF |
| CH46_RS24300 () | 40739..41051 | - | 313 | Protein_52 | IS3 family transposase ISKpn37 | Transposase |
| CH46_RS22800 () | 41229..41468 | - | 240 | WP_002213291.1 | hypothetical protein | - |
| CH46_RS00305 () | 42646..43524 | - | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| CH46_RS00310 () | 43505..43579 | - | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| CH46_RS00315 () | 43821..44075 | - | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| CH46_RS00320 () | 44213..44461 | - | 249 | WP_002233137.1 | Phospholipase D | VF |
| CH46_RS22810 () | 44587..44895 | + | 309 | Protein_58 | DDE-type integrase/transposase/recombinase | - |
| CH46_RS24750 () | 44878..45285 | - | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| CH46_RS00330 () | 45309..45626 | - | 318 | WP_002213244.1 | IS3 family transposase ISKpn37 | Transposase |
| CH46_RS00335 () | 45798..46256 | - | 459 | WP_002213246.1 | hypothetical protein | - |
| CH46_RS00340 () | 46325..46594 | + | 270 | WP_042469136.1 | transposase | - |
| CH46_RS25490 () | 46692..46850 | - | 159 | Protein_63 | EamA family transporter | - |
| CH46_RS22820 () | 46920..48223 | - | 1304 | Protein_64 | Adhesin YadA | VF |
| CH46_RS00360 () | 48823..49173 | + | 351 | Protein_65 | IS3 family transposase IS1351 | Transposase |
| CH46_RS00365 () | 49206..51521 | - | 2316 | WP_002213256.1 | Tn3 family transposase ISEc63 | Transposase |
| CH46_RS00370 () | 51685..52236 | + | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| CH46_RS00375 () | 52255..52719 | + | 465 | WP_002224338.1 | hypothetical protein | - |
| CH46_RS00380 () | 52858..53187 | + | 330 | WP_002229829.1 | hypothetical protein | - |
| CH46_RS00390 () | 53287..54386 | + | 1100 | WP_086016640.1 | IS3 family transposase ISYpe1 | Transposase |
| CH46_RS00395 () | 54534..54959 | - | 426 | WP_002213267.1 | hypothetical protein | VF |
| CH46_RS00400 () | 55335..55733 | - | 399 | Protein_72 | IS21 family transposase IS21 | Transposase |
| CH46_RS00405 () | 55733..56659 | - | 927 | Protein_73 | IS21 family transposase IS21 | Transposase |
| CH46_RS00410 () | 56748..57770 | + | 1023 | WP_000255944.1 | IS21 family transposase IS100kyp | Transposase |
| CH46_RS00415 () | 57767..58549 | + | 783 | WP_001317493.1 | IS21 family transposase IS100kyp | Transposase |
| CH46_RS24760 () | 58616..58864 | - | 249 | Protein_76 | IS21 family transposase IS21 | Transposase |
| CH46_RS00430 () | 58967..59611 | + | 645 | Protein_77 | IS3 family transposase ISYen3 | Transposase |
| CH46_RS00435 () | 59674..60066 | - | 393 | WP_002213403.1 | YopE regulator | VF |
| CH46_RS00440 () | 60260..60919 | + | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| CH46_RS00445 () | 61059..61358 | - | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CH46_RS00450 () | 61351..61593 | - | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| CH46_RS24315 () | 61759..62051 | - | 293 | Protein_82 | IS6 family transposase ISEas1 | Transposase |
| CH46_RS25495 () | 62137..62310 | + | 174 | WP_002213357.1 | hypothetical protein | - |
| CH46_RS25325 () | 62459..62695 | - | 237 | WP_154020274.1 | hypothetical protein | - |
| CH46_RS00460 () | 62855..63820 | - | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| CH46_RS00465 () | 63817..64983 | - | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| CH46_RS24765 () | 65743..66888 | - | 1146 | Protein_87 | IS3 family transposase | - |
| CH46_RS00485 () | 66995..67624 | - | 630 | WP_002229770.1 | hypothetical protein | - |
| CH46_RS24325 () | 67770..68063 | - | 294 | Protein_89 | IS3 family transposase | - |
| CH46_RS00490 () | 68222..68770 | - | 549 | WP_002213007.1 | hypothetical protein | VF |
| CH46_RS00495 () | 69270..70238 | + | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|