MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 68549 bp
Accession: NZ_CP009703 Location: 1..68549 Organism: Yersinia pestis strain Harbin35 Replicon: plasmid unnamed2
Accession: NZ_CP009703 Location: 1..68549 Organism: Yersinia pestis strain Harbin35 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH55_RS00630 () | 738..2560 | - | 1823 | Protein_1 | Yop proteins translocation protein C | VF |
| CH55_RS00635 () | 2566..2979 | - | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| CH55_RS00640 () | 3205..3303 | - | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| CH55_RS00645 () | 3382..4197 | - | 816 | Protein_4 | Virulence regulon transcriptional activator VirF | VF |
| CH55_RS00650 () | 4321..4715 | - | 395 | Protein_5 | Exoenzyme S synthesis protein B | VF |
| CH55_RS00655 () | 5291..6355 | - | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| CH55_RS00660 () | 6355..7140 | - | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| CH55_RS00665 () | 7137..7403 | - | 267 | WP_002212945.1 | hypothetical protein | VF |
| CH55_RS00670 () | 7405..8058 | - | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| CH55_RS00675 () | 8055..8978 | - | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| CH55_RS00680 () | 8975..10342 | - | 1368 | WP_002212950.1 | hypothetical protein | VF |
| CH55_RS00685 () | 10342..10806 | - | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| CH55_RS00690 () | 10803..12121 | - | 1319 | Protein_13 | putative ATP synthase YscN | VF |
| CH55_RS00695 () | 12319..13200 | + | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| CH55_RS00700 () | 13181..13459 | + | 279 | WP_002212965.1 | Protein TyeA | VF |
| CH55_RS00705 () | 13446..13817 | + | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| CH55_RS00710 () | 13814..14182 | + | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| CH55_RS00715 () | 14179..14523 | + | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| CH55_RS00720 () | 14510..16624 | + | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| CH55_RS00725 () | 16621..17061 | + | 441 | WP_002220918.1 | hypothetical protein | VF |
| CH55_RS00730 () | 17103..17390 | + | 288 | WP_002212973.1 | hypothetical protein | VF |
| CH55_RS00735 () | 17392..18372 | + | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| CH55_RS00740 () | 18385..18891 | + | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| CH55_RS00745 () | 18869..20075 | + | 1207 | Protein_24 | Protein YopB | VF |
| CH55_RS00750 () | 20094..21014 | + | 921 | WP_002212987.1 | Protein YopD | VF |
| CH55_RS23655 () | 21451..21594 | - | 144 | Protein_26 | IS256 family transposase IS285 | Transposase |
| CH55_RS23660 () | 21694..22330 | - | 637 | Protein_27 | IS6 family transposase | - |
| CH55_RS00765 () | 22351..22560 | + | 210 | WP_002229781.1 | hypothetical protein | - |
| CH55_RS00770 () | 22954..24183 | + | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| CH55_RS00775 () | 24226..24543 | - | 318 | Protein_30 | IS256 family transposase ISSod4 | Transposase |
| CH55_RS24080 () | 24425..24670 | - | 246 | WP_116442925.1 | transposase | - |
| CH55_RS22195 () | 24673..24891 | + | 219 | Protein_32 | IS6 family transposase | - |
| CH55_RS00780 () | 25419..25838 | - | 420 | WP_002222515.1 | hypothetical protein | - |
| CH55_RS22200 () | 25856..26137 | - | 282 | Protein_34 | DDE-type integrase/transposase/recombinase | - |
| CH55_RS00790 () | 26543..26941 | - | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| CH55_RS00795 () | 26941..27909 | - | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
| CH55_RS00800 () | 28409..28957 | + | 549 | WP_002213007.1 | hypothetical protein | VF |
| CH55_RS23665 () | 29116..29409 | + | 294 | Protein_38 | IS3 family transposase | - |
| CH55_RS00805 () | 29555..30184 | + | 630 | WP_002229770.1 | hypothetical protein | - |
| CH55_RS24085 () | 30291..31436 | + | 1146 | Protein_40 | IS3 family transposase | - |
| CH55_RS00825 () | 32196..33362 | + | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| CH55_RS00830 () | 33359..34324 | + | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| CH55_RS24655 () | 34484..34720 | + | 237 | WP_154020274.1 | hypothetical protein | - |
| CH55_RS24790 () | 34869..35042 | - | 174 | WP_002213357.1 | hypothetical protein | - |
| CH55_RS23675 () | 35128..35420 | + | 293 | Protein_45 | IS6 family transposase ISEas1 | Transposase |
| CH55_RS00840 () | 35586..35828 | + | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| CH55_RS00845 () | 35821..36120 | + | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CH55_RS00850 () | 36260..36919 | - | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| CH55_RS00855 () | 37113..37505 | + | 393 | WP_002213403.1 | YopE regulator | VF |
| CH55_RS00860 () | 37568..38212 | - | 645 | Protein_50 | IS3 family transposase ISYen3 | Transposase |
| CH55_RS00870 () | 38315..39487 | + | 1173 | WP_002220893.1 | IS21 family transposase IS21 | Transposase |
| CH55_RS00875 () | 39487..39885 | + | 399 | Protein_52 | IS21 family transposase IS21 | Transposase |
| CH55_RS00880 () | 40262..40687 | + | 426 | WP_002213267.1 | hypothetical protein | VF |
| CH55_RS00895 () | 42034..42363 | - | 330 | WP_002229829.1 | hypothetical protein | - |
| CH55_RS00900 () | 42502..42966 | - | 465 | WP_002224338.1 | hypothetical protein | - |
| CH55_RS00905 () | 42985..43536 | - | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| CH55_RS00910 () | 43700..46014 | + | 2315 | Protein_58 | Tn3 family transposase ISEc63 | Transposase |
| CH55_RS00915 () | 46047..46397 | - | 351 | Protein_59 | IS3 family transposase IS1351 | Transposase |
| CH55_RS22240 () | 46997..48300 | + | 1304 | Protein_60 | Adhesin YadA | VF |
| CH55_RS24795 () | 48370..48528 | + | 159 | Protein_61 | EamA family transporter | - |
| CH55_RS00935 () | 48626..48895 | - | 270 | WP_042469136.1 | transposase | - |
| CH55_RS00940 () | 48964..49422 | + | 459 | WP_002213246.1 | hypothetical protein | - |
| CH55_RS00945 () | 49594..49911 | + | 318 | WP_002213244.1 | IS3 family transposase ISKpn37 | Transposase |
| CH55_RS24095 () | 49935..50342 | + | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| CH55_RS22250 () | 50325..50633 | - | 309 | Protein_66 | DDE-type integrase/transposase/recombinase | - |
| CH55_RS00955 () | 50759..51007 | + | 249 | WP_002233137.1 | Phospholipase D | VF |
| CH55_RS00960 () | 51145..51399 | + | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| CH55_RS00965 () | 51641..51715 | + | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| CH55_RS00970 () | 51696..52574 | + | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| CH55_RS22260 () | 53747..53986 | + | 240 | WP_002213291.1 | hypothetical protein | - |
| CH55_RS23685 () | 54164..54476 | + | 313 | Protein_72 | IS3 family transposase ISKpn37 | Transposase |
| CH55_RS00980 () | 54732..55181 | + | 450 | WP_002229809.1 | hypothetical protein | VF |
| CH55_RS00985 () | 55189..57386 | + | 2198 | Protein_74 | Protein kinase YpkA | VF |
| CH55_RS00990 () | 57782..58648 | + | 867 | WP_002225474.1 | Effector protein YopJ | VF |
| CH55_RS00995 () | 59234..59812 | - | 579 | Protein_76 | IS3 family transposase ISYpe1 | Transposase |
| CH55_RS01000 () | 59815..60048 | + | 234 | Protein_77 | transposase domain-containing protein | - |
| CH55_RS01005 () | 60331..61737 | + | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| CH55_RS22275 () | 61958..62230 | - | 273 | Protein_79 | transposase | - |
| CH55_RS23690 () | 62249..63278 | - | 1030 | Protein_80 | IS3 family transposase | - |
| CH55_RS01025 () | 63826..64173 | - | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| CH55_RS01030 () | 64398..65063 | - | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| CH55_RS01035 () | 65009..65638 | - | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| CH55_RS01040 () | 65638..66372 | - | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| CH55_RS01045 () | 66379..66726 | - | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| CH55_RS01050 () | 66727..67224 | - | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| CH55_RS01055 () | 67221..67568 | - | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| CH55_RS01060 () | 67570..67833 | - | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| CH55_RS01065 () | 67834..68034 | - | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|