MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 118585 bp
Accession: NZ_CP009570 Location: 1..118585 Organism: Salmonella enterica subsp. enterica serovar Newport str. CVM N1543 isolate CFSAN000926 Replicon: plasmid pCVMN1543
Accession: NZ_CP009570 Location: 1..118585 Organism: Salmonella enterica subsp. enterica serovar Newport str. CVM N1543 isolate CFSAN000926 Replicon: plasmid pCVMN1543
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SEEN543_RS00010 () | 1..825 | - | 825 | Protein_0 | beta-lactamase | - |
| SEEN543_RS00015 () | 1152..1460 | - | 309 | Protein_1 | IS1380 family transposase | - |
| SEEN543_RS00020 () | 1647..2909 | + | 1263 | WP_000608644.1 | IS1380-like element ISEc9 family transposase | - |
| SEEN543_RS00025 () | 3233..4378 | + | 1146 | WP_000976514.1 | class C beta-lactamase CMY-2 | - |
| SEEN543_RS00030 () | 4472..5005 | + | 534 | WP_001221666.1 | lipocalin family protein | - |
| SEEN543_RS00035 () | 5002..5319 | - | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| SEEN543_RS00045 () | 6047..11533 | + | 5487 | WP_000606835.1 | DUF4165 domain-containing protein | - |
| SEEN543_RS00050 () | 11682..12389 | + | 708 | WP_001259346.1 | DsbC family protein | - |
| SEEN543_RS00055 () | 12386..13087 | + | 702 | Protein_8 | conjugal transfer protein TraC | - |
| SEEN543_RS00060 () | 13087..14046 | - | 960 | Protein_9 | IS1380-like element ISEc9 family transposase | - |
| SEEN543_RS00065 () | 14331..14723 | - | 393 | WP_000479535.1 | hypothetical protein | - |
| SEEN543_RS00070 () | 14727..15305 | - | 579 | WP_000793435.1 | type IV conjugative transfer system lipoprotein TraV | - |
| SEEN543_RS00075 () | 15302..16615 | - | 1314 | WP_024131605.1 | conjugal transfer protein TraB | - |
| SEEN543_RS00080 () | 16615..17532 | - | 918 | WP_000794249.1 | type-F conjugative transfer system secretin TraK | - |
| SEEN543_RS00085 () | 17516..18142 | - | 627 | WP_001049717.1 | hypothetical protein | - |
| SEEN543_RS00090 () | 18139..18420 | - | 282 | WP_000805625.1 | type IV conjugative transfer system protein TraL | - |
| SEEN543_RS00095 () | 18565..18942 | - | 378 | WP_001326174.1 | hypothetical protein | - |
| SEEN543_RS00100 () | 19266..19928 | - | 663 | WP_001231464.1 | hypothetical protein | - |
| SEEN543_RS00105 () | 19928..20305 | - | 378 | WP_000869297.1 | hypothetical protein | - |
| SEEN543_RS00110 () | 20315..20761 | - | 447 | WP_000122507.1 | hypothetical protein | - |
| SEEN543_RS00115 () | 20771..21400 | - | 630 | WP_000743449.1 | DUF4400 domain-containing protein | - |
| SEEN543_RS00120 () | 21357..21941 | - | 585 | WP_000332868.1 | hypothetical protein | - |
| SEEN543_RS00125 () | 21952..23817 | - | 1866 | WP_000178857.1 | conjugative transfer system coupling protein TraD | - |
| SEEN543_RS00130 () | 23814..26786 | - | 2973 | WP_001326173.1 | TraI domain-containing protein | - |
| SEEN543_RS00135 () | 26954..27571 | + | 618 | WP_001249395.1 | hypothetical protein | - |
| SEEN543_RS00140 () | 27553..27786 | + | 234 | WP_001191890.1 | hypothetical protein | - |
| SEEN543_RS00145 () | 27786..29978 | + | 2193 | WP_000366823.1 | DNA topoisomerase 3 | - |
| SEEN543_RS00150 () | 29993..30481 | + | 489 | WP_000467110.1 | hypothetical protein | - |
| SEEN543_RS00155 () | 30572..30871 | - | 300 | WP_001326171.1 | hypothetical protein | - |
| SEEN543_RS00165 () | 31083..31700 | - | 618 | WP_000464630.1 | hypothetical protein | - |
| SEEN543_RS00170 () | 31756..32412 | - | 657 | WP_000268552.1 | hypothetical protein | - |
| SEEN543_RS00175 () | 32412..33839 | - | 1428 | WP_000936897.1 | DNA cytosine methyltransferase | - |
| SEEN543_RS00180 () | 33843..34343 | - | 501 | WP_000647188.1 | hypothetical protein | - |
| SEEN543_RS00185 () | 34352..34663 | - | 312 | WP_001447539.1 | hypothetical protein | - |
| SEEN543_RS00190 () | 34669..35100 | - | 432 | WP_001326170.1 | hypothetical protein | - |
| SEEN543_RS00195 () | 35168..35842 | - | 675 | WP_000344149.1 | hypothetical protein | - |
| SEEN543_RS25855 () | 35817..36098 | - | 282 | WP_000044823.1 | hypothetical protein | - |
| SEEN543_RS00205 () | 36091..36468 | - | 378 | WP_001125904.1 | hypothetical protein | - |
| SEEN543_RS25715 () | 36795..36938 | + | 144 | WP_000939033.1 | hypothetical protein | - |
| SEEN543_RS00210 () | 37030..37665 | + | 636 | WP_000074431.1 | N-6 DNA methylase | - |
| SEEN543_RS00215 () | 37718..37990 | - | 273 | WP_000703827.1 | helix-turn-helix domain-containing protein | - |
| SEEN543_RS00220 () | 38039..39220 | - | 1182 | WP_001207227.1 | ParB/RepB/Spo0J family partition protein | - |
| SEEN543_RS00225 () | 39224..40009 | - | 786 | WP_001151304.1 | ParA family protein | - |
| SEEN543_RS00230 () | 40183..40494 | - | 312 | WP_000338945.1 | hypothetical protein | - |
| SEEN543_RS00240 () | 40801..41616 | + | 816 | WP_001043260.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | - |
| SEEN543_RS00245 () | 41677..42480 | + | 804 | WP_001082319.1 | aminoglycoside O-phosphotransferase APH(3'')-Ib | - |
| SEEN543_RS00250 () | 42480..43316 | + | 837 | WP_000480968.1 | aminoglycoside O-phosphotransferase APH(6)-Id | - |
| SEEN543_RS00260 () | 43622..43864 | + | 243 | WP_000844627.1 | transposase | - |
| SEEN543_RS00265 () | 43896..44546 | - | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| SEEN543_RS00270 () | 44652..45851 | + | 1200 | WP_000804063.1 | tetracycline efflux MFS transporter Tet(A) | - |
| SEEN543_RS25365 () | 45818..46006 | - | 189 | Protein_50 | IS91 family transposase | - |
| SEEN543_RS00280 () | 46118..46423 | - | 306 | WP_001255015.1 | LysR family transcriptional regulator | - |
| SEEN543_RS00285 () | 46451..47665 | - | 1215 | WP_000214123.1 | chloramphenicol/florfenicol efflux MFS transporter FloR | - |
| SEEN543_RS25905 () | 47882..48328 | - | 447 | Protein_53 | DUF3363 domain-containing protein | - |
| SEEN543_RS00295 () | 48797..50290 | - | 1494 | WP_001120888.1 | IS91-like element ISVsa3 family transposase | - |
| SEEN543_RS00300 () | 50501..50725 | - | 225 | WP_000743213.1 | hypothetical protein | - |
| SEEN543_RS00305 () | 50722..51459 | - | 738 | WP_001366550.1 | recombinase family protein | - |
| SEEN543_RS25720 () | 51945..52085 | - | 141 | WP_001044210.1 | hypothetical protein | - |
| SEEN543_RS00315 () | 52091..52795 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| SEEN543_RS00320 () | 53102..53281 | + | 180 | Protein_59 | helix-turn-helix transcriptional regulator | - |
| SEEN543_RS00325 () | 53346..54050 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| SEEN543_RS00335 () | 54265..54762 | - | 498 | WP_000062185.1 | hypothetical protein | - |
| SEEN543_RS00340 () | 54765..55253 | - | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| SEEN543_RS00345 () | 55350..55685 | + | 336 | WP_000683476.1 | hypothetical protein | - |
| SEEN543_RS00350 () | 55700..56170 | - | 471 | WP_001281821.1 | hypothetical protein | - |
| SEEN543_RS00355 () | 56163..56534 | - | 372 | WP_000516916.1 | hypothetical protein | - |
| SEEN543_RS00360 () | 56545..56739 | - | 195 | WP_000343597.1 | hypothetical protein | - |
| SEEN543_RS00370 () | 57080..57628 | - | 549 | WP_001061574.1 | transcriptional regulator | - |
| SEEN543_RS00375 () | 57791..58141 | + | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| SEEN543_RS00380 () | 58146..58448 | + | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin Detail |
| SEEN543_RS00385 () | 58475..58768 | - | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
| SEEN543_RS00390 () | 58856..59128 | - | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
| SEEN543_RS00395 () | 59186..59713 | - | 528 | WP_001236377.1 | thermonuclease family protein | - |
| SEEN543_RS00405 () | 59944..60801 | - | 858 | WP_001167032.1 | hypothetical protein | - |
| SEEN543_RS00410 () | 60788..61018 | - | 231 | WP_000972663.1 | hypothetical protein | - |
| SEEN543_RS00415 () | 61018..61536 | - | 519 | WP_000210756.1 | nitrite reductase | - |
| SEEN543_RS00420 () | 61533..61979 | - | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
| SEEN543_RS00425 () | 61979..62338 | - | 360 | WP_000422768.1 | hypothetical protein | - |
| SEEN543_RS00430 () | 62395..62823 | - | 429 | WP_000591074.1 | hypothetical protein | - |
| SEEN543_RS00435 () | 62857..63717 | - | 861 | WP_000139698.1 | DsbA family protein | - |
| SEEN543_RS00440 () | 63733..64692 | - | 960 | WP_000829616.1 | S49 family peptidase | - |
| SEEN543_RS00445 () | 64692..65546 | - | 855 | WP_000539392.1 | hypothetical protein | - |
| SEEN543_RS00450 () | 65551..65844 | - | 294 | WP_001370730.1 | hypothetical protein | - |
| SEEN543_RS00455 () | 65855..66328 | - | 474 | WP_000057877.1 | hypothetical protein | - |
| SEEN543_RS00460 () | 66425..66946 | - | 522 | WP_000805800.1 | hypothetical protein | - |
| SEEN543_RS00465 () | 66949..67470 | - | 522 | WP_000393785.1 | hypothetical protein | - |
| SEEN543_RS00470 () | 67475..68083 | - | 609 | WP_000849071.1 | hypothetical protein | - |
| SEEN543_RS00475 () | 68352..69467 | + | 1116 | WP_000946102.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| SEEN543_RS00480 () | 69485..69919 | + | 435 | WP_000883925.1 | hypothetical protein | - |
| SEEN543_RS00495 () | 70956..72056 | - | 1101 | WP_000350011.1 | plasmid replication protein | - |
| SEEN543_RS00500 () | 72041..72328 | - | 288 | WP_000127321.1 | hypothetical protein | - |
| SEEN543_RS00505 () | 72333..72872 | - | 540 | WP_001447712.1 | hypothetical protein | - |
| SEEN543_RS00510 () | 73371..74354 | + | 984 | WP_000077458.1 | ParM/StbA family protein | - |
| SEEN543_RS00515 () | 74371..74664 | + | 294 | WP_000919078.1 | hypothetical protein | - |
| SEEN543_RS00520 () | 74666..75085 | + | 420 | WP_000651490.1 | H-NS histone family protein | - |
| SEEN543_RS00525 () | 75145..75695 | - | 551 | Protein_95 | regulator | - |
| SEEN543_RS00530 () | 75692..76300 | - | 609 | WP_000891157.1 | hypothetical protein | - |
| SEEN543_RS00535 () | 76311..76844 | - | 534 | WP_000790610.1 | transglycosylase SLT domain-containing protein | - |
| SEEN543_RS00540 () | 76844..77116 | - | 273 | WP_000356489.1 | helix-turn-helix domain-containing protein | - |
| SEEN543_RS00545 () | 77832..78194 | + | 363 | WP_000683483.1 | hypothetical protein | - |
| SEEN543_RS00550 () | 78232..81846 | - | 3615 | WP_000534551.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| SEEN543_RS00555 () | 81859..83292 | - | 1434 | WP_000256129.1 | conjugal transfer protein TraH | - |
| SEEN543_RS00560 () | 83294..84334 | - | 1041 | WP_001326396.1 | conjugal transfer protein TraF | - |
| SEEN543_RS00565 () | 84445..85956 | - | 1512 | WP_000811656.1 | UvrD-helicase domain-containing protein | - |
| SEEN543_RS00575 () | 86243..87283 | - | 1041 | WP_000101568.1 | DNA-binding protein | - |
| SEEN543_RS00580 () | 87445..88320 | - | 876 | WP_001097010.1 | DNA replication terminus site-binding protein | - |
| SEEN543_RS00585 () | 88647..89138 | - | 492 | WP_000139717.1 | hypothetical protein | - |
| SEEN543_RS00590 () | 89135..90004 | - | 870 | WP_000997323.1 | 3'-5' exonuclease | - |
| SEEN543_RS00595 () | 90009..91019 | - | 1011 | WP_000543934.1 | tyrosine-type recombinase/integrase | - |
| SEEN543_RS00600 () | 91022..91558 | - | 537 | WP_000949433.1 | hypothetical protein | - |
| SEEN543_RS00610 () | 91857..92138 | - | 282 | WP_000575657.1 | hypothetical protein | - |
| SEEN543_RS00615 () | 92408..93010 | + | 603 | WP_000278322.1 | hypothetical protein | - |
| SEEN543_RS25820 () | 93026..93478 | - | 453 | Protein_112 | hypothetical protein | - |
| SEEN543_RS00625 () | 93649..94089 | - | 441 | WP_001326394.1 | hypothetical protein | - |
| SEEN543_RS00630 () | 94061..98314 | - | 4254 | WP_001257735.1 | RHS domain-containing protein | - |
| SEEN543_RS00640 () | 98447..99172 | - | 726 | WP_000988731.1 | hypothetical protein | - |
| SEEN543_RS00645 () | 99286..99660 | - | 375 | WP_000868820.1 | hypothetical protein | - |
| SEEN543_RS25830 () | 99781..99897 | - | 117 | WP_000338626.1 | hypothetical protein | - |
| SEEN543_RS25835 () | 99907..100026 | - | 120 | Protein_118 | permease | - |
| SEEN543_RS00655 () | 100303..101307 | - | 1005 | WP_000427623.1 | IS110-like element IS4321 family transposase | - |
| SEEN543_RS00660 () | 101407..101841 | - | 435 | WP_000414383.1 | mercury resistance transcriptional regulator MerR | - |
| SEEN543_RS00665 () | 101913..102263 | + | 351 | WP_001294666.1 | mercuric transport protein MerT | - |
| SEEN543_RS00670 () | 102279..102554 | + | 276 | WP_000732290.1 | mercury resistance system periplasmic binding protein MerP | - |
| SEEN543_RS00675 () | 102626..104311 | + | 1686 | WP_000149288.1 | mercury(II) reductase | - |
| SEEN543_RS00680 () | 104326..104964 | + | 639 | WP_000761850.1 | organomercurial lyase MerB | - |
| SEEN543_RS00685 () | 105076..105441 | + | 366 | WP_000995361.1 | mercury resistance co-regulator MerD | - |
| SEEN543_RS00690 () | 105438..105674 | + | 237 | WP_001087810.1 | broad-spectrum mercury transporter MerE | - |
| SEEN543_RS00695 () | 105671..106660 | + | 990 | WP_001276635.1 | DUF3330 domain-containing protein | - |
| SEEN543_RS00700 () | 106870..107574 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| SEEN543_RS00705 () | 107637..108341 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| SEEN543_RS00710 () | 108395..108754 | - | 360 | Protein_130 | conjugal transfer protein TraW | - |
| SEEN543_RS00715 () | 108717..109247 | - | 531 | WP_001010740.1 | S26 family signal peptidase | - |
| SEEN543_RS00720 () | 109244..109561 | - | 318 | WP_000351984.1 | hypothetical protein | - |
| SEEN543_RS00725 () | 109576..112023 | - | 2448 | WP_000637384.1 | type IV secretion system protein TraC | - |
| SEEN543_RS00730 () | 112020..112727 | - | 708 | WP_001259346.1 | DsbC family protein | - |
| SEEN543_RS00735 () | 112876..118362 | - | 5487 | Protein_135 | DUF4165 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|