MGE detailed information
MGE type: Genomic_island MGE length: 46039 bp
Accession: NZ_CP009042 Location: 949536..995574 Organism: Vibrio cholerae O1 biovar El Tor strain FJ147 Replicon: chromosome
Accession: NZ_CP009042 Location: 949536..995574 Organism: Vibrio cholerae O1 biovar El Tor strain FJ147 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IR04_RS09480 () | 945910..946593 | - | 684 | WP_000841479.1 | MFS transporter | - |
| IR04_RS09490 () | 946816..948495 | + | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| IR04_RS09495 () | 948693..949202 | + | 510 | WP_001077909.1 | hypothetical protein | - |
| IR04_RS09500 () | 949536..950240 | - | 705 | WP_001880605.1 | NERD domain-containing protein | - |
| IR04_RS09505 () | 950310..953246 | - | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| IR04_RS09510 () | 953250..953828 | - | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| IR04_RS09515 () | 954256..954723 | - | 468 | WP_000804849.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| IR04_RS09520 () | 954720..956081 | - | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| IR04_RS09530 () | 956685..957662 | + | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| IR04_RS19585 () | 957688..958368 | - | 681 | Protein_826 | IS5 family transposase | - |
| IR04_RS09545 () | 958710..960230 | - | 1521 | WP_000640055.1 | aldehyde dehydrogenase | - |
| IR04_RS09550 () | 960410..963451 | + | 3042 | WP_001880619.1 | fibronectin type III domain-containing protein | - |
| IR04_RS09555 () | 963564..968165 | + | 4602 | WP_000482254.1 | membrane protein | - |
| IR04_RS09560 () | 968162..969100 | + | 939 | WP_001232137.1 | hypothetical protein | - |
| IR04_RS09565 () | 969210..969704 | + | 495 | WP_000218964.1 | thiol peroxidase | - |
| IR04_RS09570 () | 969980..971842 | - | 1863 | WP_000591844.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| IR04_RS09575 () | 972283..972948 | + | 666 | WP_000542596.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| IR04_RS09580 () | 972933..973343 | + | 411 | WP_000549073.1 | toxin-coregulated pilus protein TcpH | - |
| IR04_RS09585 () | 973887..974561 | + | 675 | WP_001176375.1 | toxin-coregulated pilus major pilin TcpA | - |
| IR04_RS09590 () | 974641..975933 | + | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| IR04_RS09595 () | 975933..976385 | + | 453 | WP_000742753.1 | toxin-coregulated pilus protein TcpQ | - |
| IR04_RS09600 () | 976388..977857 | + | 1470 | WP_000750979.1 | toxin-coregulated pilus secretin TcpC | - |
| IR04_RS19590 () | 977850..978305 | + | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| IR04_RS09610 () | 978293..979129 | + | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| IR04_RS09615 () | 979145..979603 | + | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| IR04_RS09620 () | 979593..981104 | + | 1512 | WP_000020697.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| IR04_RS09625 () | 981079..982101 | + | 1023 | WP_000691946.1 | toxin-coregulated pilus assembly protein TcpE | - |
| IR04_RS09630 () | 982111..983127 | + | 1017 | WP_001269573.1 | colonization factor TcpF | - |
| IR04_RS09635 () | 983334..984164 | + | 831 | WP_000579582.1 | pilus/toxin transcriptional regulator ToxT | - |
| IR04_RS09640 () | 984164..984925 | + | 762 | WP_000456980.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| IR04_RS09645 () | 984932..986812 | + | 1881 | WP_000672505.1 | methyl-accepting chemotaxis protein AcfB | - |
| IR04_RS09650 () | 986818..987587 | + | 770 | Protein_848 | accessory colonization factor AcfC | - |
| IR04_RS09655 () | 987603..988076 | + | 474 | WP_000287237.1 | RDD family protein | - |
| IR04_RS09660 () | 988085..988993 | + | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| IR04_RS09665 () | 988996..989643 | - | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| IR04_RS09670 () | 989817..994379 | + | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| IR04_RS19595 () | 995010..995246 | - | 237 | WP_001919887.1 | tyrosine-type recombinase/integrase | - |
| IR04_RS20115 () | 995889..996289 | - | 401 | Protein_854 | transposase | - |
| IR04_RS09680 () | 996294..997562 | - | 1269 | WP_001107728.1 | tyrosine-type recombinase/integrase | - |
| IR04_RS09685 () | 998164..998649 | - | 486 | WP_000162689.1 | SsrA-binding protein SmpB | - |
| IR04_RS09690 () | 998833..999267 | + | 435 | WP_000815876.1 | type II toxin-antitoxin system RatA family toxin | - |
| IR04_RS09695 () | 999270..999575 | + | 306 | WP_001918351.1 | RnfH family protein | - |
| IR04_RS09700 () | 999653..1000012 | - | 360 | WP_001160907.1 | outer membrane protein assembly factor BamE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|