MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 146418 bp
Accession: NZ_CP009042 Location: 684084..830501 Organism: Vibrio cholerae O1 biovar El Tor strain FJ147 Replicon: chromosome
Accession: NZ_CP009042 Location: 684084..830501 Organism: Vibrio cholerae O1 biovar El Tor strain FJ147 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IR04_RS08265 () | 679104..679511 | + | 408 | WP_000887847.1 | MarR family transcriptional regulator | - |
| IR04_RS08270 () | 679558..680895 | + | 1338 | WP_000981941.1 | sodium-coupled multidrug efflux MATE transporter VcrM | - |
| IR04_RS08275 () | 680948..681826 | - | 879 | WP_000872504.1 | U32 family peptidase | - |
| IR04_RS08280 () | 681838..682851 | - | 1014 | WP_000421327.1 | U32 family peptidase | - |
| IR04_RS08285 () | 682959..685013 | - | 2055 | WP_045788694.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| IR04_RS08290 () | 685246..685773 | + | 528 | WP_000932672.1 | SCP2 domain-containing protein | - |
| IR04_RS08295 () | 685757..686260 | + | 504 | WP_000908540.1 | N-acetyltransferase | - |
| IR04_RS08300 () | 686371..686778 | + | 408 | WP_000953212.1 | DNA polymerase III subunit psi | - |
| IR04_RS08305 () | 686775..687224 | + | 450 | WP_000214238.1 | Ribosomal-protein-alanine acetyltransferase | VF |
| IR04_RS08310 () | 687213..689270 | - | 2058 | WP_000160066.1 | putative signaling protein | VF |
| IR04_RS08315 () | 690011..690199 | + | 189 | WP_000127615.1 | hypothetical protein | - |
| IR04_RS08320 () | 690345..692363 | + | 2019 | WP_000211147.1 | ATP-binding protein | - |
| IR04_RS08325 () | 692493..693734 | - | 1242 | WP_001218618.1 | Prophage integrase IntS ; Integrase | Integrase |
| IR04_RS08330 () | 693736..694005 | - | 270 | WP_001995600.1 | hypothetical protein | - |
| IR04_RS08335 () | 694008..694982 | - | 975 | WP_000497807.1 | ParM/StbA family protein | - |
| IR04_RS08340 () | 695447..695890 | + | 444 | WP_000348524.1 | hypothetical protein | - |
| IR04_RS08345 () | 695901..696944 | - | 1044 | Protein_598 | translesion error-prone DNA polymerase V subunit UmuC | - |
| IR04_RS08350 () | 697348..697926 | + | 579 | Protein_599 | Tn3 family transposase TnpA_IS3000 | Transposase |
| IR04_RS08355 () | 698064..701042 | + | 2979 | WP_000985631.1 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| IR04_RS08365 () | 701460..702953 | + | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| IR04_RS08370 () | 702984..703868 | + | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| IR04_RS08375 () | 704085..705299 | + | 1215 | WP_000214119.1 | Bicyclomycin resistance protein | ARG |
| IR04_RS08380 () | 705327..705632 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| IR04_RS08385 () | 705744..706148 | + | 405 | Protein_605 | IS91 family transposase ISPps1 | Transposase |
| IR04_RS08390 () | 706255..707091 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| IR04_RS08395 () | 707091..707894 | - | 804 | WP_001082316.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| IR04_RS08400 () | 707955..708770 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| IR04_RS08405 () | 709241..710548 | + | 1308 | Protein_609 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| IR04_RS08410 () | 710585..711796 | - | 1212 | WP_001122813.1 | IS256 family transposase ISSod18 | Transposase |
| IR04_RS08415 () | 711857..712357 | - | 501 | Protein_611 | site-specific integrase | - |
| IR04_RS08420 () | 712546..712779 | - | 234 | Protein_612 | DNA polymerase V subunit UmuC | - |
| IR04_RS08425 () | 712787..713236 | - | 450 | WP_000116661.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| IR04_RS08430 () | 713235..713492 | + | 258 | WP_000182836.1 | hypothetical protein | - |
| IR04_RS08435 () | 713876..714781 | + | 906 | WP_000196209.1 | DNA polymerase III subunit epsilon | - |
| IR04_RS08440 () | 714869..715168 | + | 300 | WP_000284114.1 | hypothetical protein | - |
| IR04_RS08445 () | 715486..716406 | + | 921 | WP_000180270.1 | WYL domain-containing protein | - |
| IR04_RS08450 () | 716424..717224 | + | 801 | WP_000653856.1 | DUF1819 family protein | - |
| IR04_RS08455 () | 717208..717756 | + | 549 | WP_001115853.1 | hypothetical protein | - |
| IR04_RS08460 () | 717769..721458 | + | 3690 | WP_000152592.1 | BREX system P-loop protein BrxC | - |
| IR04_RS08465 () | 721463..725203 | + | 3741 | WP_000779609.1 | BREX-1 system adenine-specific DNA-methyltransferase PglX | - |
| IR04_RS08470 () | 725216..727519 | + | 2304 | WP_000567536.1 | PglZ domain-containing protein | - |
| IR04_RS08475 () | 727558..729609 | + | 2052 | WP_000279702.1 | protease Lon-related BREX system protein BrxL | - |
| IR04_RS08480 () | 729636..730406 | + | 771 | WP_000158025.1 | hypothetical protein | - |
| IR04_RS08485 () | 730441..731256 | + | 816 | WP_001125250.1 | abortive infection family protein | - |
| IR04_RS08490 () | 731378..733528 | + | 2151 | WP_000475916.1 | TraI domain-containing protein | - |
| IR04_RS08495 () | 733577..735397 | + | 1821 | WP_000661888.1 | conjugative transfer system coupling protein TraD | - |
| IR04_RS08500 () | 735407..735967 | + | 561 | WP_000546514.1 | hypothetical protein | - |
| IR04_RS08505 () | 735954..736589 | + | 636 | WP_000033757.1 | DUF4400 domain-containing protein | - |
| IR04_RS08510 () | 736616..737203 | - | 588 | WP_001167482.1 | hypothetical protein | - |
| IR04_RS08520 () | 737492..737773 | + | 282 | WP_000433891.1 | type IV conjugative transfer system protein TraL | - |
| IR04_RS08525 () | 737770..738396 | + | 627 | WP_000667170.1 | hypothetical protein | - |
| IR04_RS08530 () | 738380..739276 | + | 897 | WP_001911237.1 | type-F conjugative transfer system secretin TraK | - |
| IR04_RS08535 () | 739279..740568 | + | 1290 | WP_000647305.1 | TraB/VirB10 family protein | - |
| IR04_RS08540 () | 740643..741215 | + | 573 | WP_001944091.1 | type IV conjugative transfer system lipoprotein TraV | - |
| IR04_RS08545 () | 741212..741598 | + | 387 | WP_000180223.1 | hypothetical protein | - |
| IR04_RS08550 () | 741819..742610 | + | 792 | WP_000095578.1 | type IV toxin-antitoxin system AbiEi family antitoxin | Antitoxin Detail |
| IR04_RS08555 () | 742603..743541 | + | 939 | WP_000356587.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| IR04_RS08560 () | 743673..744365 | + | 693 | WP_001228926.1 | DsbC family protein | - |
| IR04_RS08565 () | 744365..746764 | + | 2400 | WP_000648042.1 | type IV secretion system protein TraC | - |
| IR04_RS08570 () | 746757..747104 | + | 348 | WP_001044650.1 | hypothetical protein | - |
| IR04_RS08575 () | 747088..747600 | + | 513 | WP_001166558.1 | S26 family signal peptidase | - |
| IR04_RS08580 () | 747611..748735 | + | 1125 | WP_001189235.1 | hypothetical protein | - |
| IR04_RS08585 () | 748719..749747 | + | 1029 | WP_000735886.1 | TraU family protein | - |
| IR04_RS08590 () | 749750..753442 | + | 3693 | WP_000805082.1 | conjugal transfer protein TraN | - |
| IR04_RS08595 () | 753533..755098 | - | 1566 | WP_045788703.1 | ATPase | - |
| IR04_RS08600 () | 755229..755984 | - | 756 | WP_000546748.1 | IS21 family transposase ISAlde2 | Transposase |
| IR04_RS08605 () | 755974..757473 | - | 1500 | WP_001920874.1 | IS21 family transposase ISCte8 | Transposase |
| IR04_RS08610 () | 757581..758597 | - | 1017 | WP_001918293.1 | ATP-binding protein | - |
| IR04_RS08615 () | 758828..759511 | - | 684 | WP_001082313.1 | endonuclease | - |
| IR04_RS08620 () | 759620..760222 | - | 603 | WP_000035785.1 | hypothetical protein | - |
| IR04_RS08625 () | 760590..760916 | + | 327 | WP_000455723.1 | hypothetical protein | - |
| IR04_RS08630 () | 760932..761351 | + | 420 | WP_000795985.1 | single-stranded DNA-binding protein | - |
| IR04_RS08635 () | 761431..762249 | + | 819 | WP_000414662.1 | phage recombination protein Bet | - |
| IR04_RS20445 () | 762331..762474 | + | 144 | WP_000167277.1 | hypothetical protein | - |
| IR04_RS08640 () | 762535..763551 | + | 1017 | WP_000862956.1 | YqaJ viral recombinase family protein | - |
| IR04_RS08645 () | 763761..764720 | + | 960 | WP_000139695.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| IR04_RS08650 () | 764720..765487 | + | 768 | WP_000970189.1 | hypothetical protein | - |
| IR04_RS08655 () | 765586..766539 | + | 954 | WP_000027441.1 | DUF3150 domain-containing protein | - |
| IR04_RS08660 () | 766601..767041 | + | 441 | WP_001192023.1 | hypothetical protein | - |
| IR04_RS08665 () | 767111..768766 | + | 1656 | WP_001016320.1 | VWA domain-containing protein | - |
| IR04_RS08670 () | 768851..769348 | + | 498 | WP_000797297.1 | DNA repair protein RadC | - |
| IR04_RS08675 () | 769348..769689 | + | 342 | WP_001081787.1 | hypothetical protein | - |
| IR04_RS08680 () | 769780..770853 | + | 1074 | WP_001207590.1 | toprim domain-containing protein | - |
| IR04_RS08685 () | 770943..771650 | + | 708 | WP_000989526.1 | hypothetical protein | - |
| IR04_RS19575 () | 771922..772326 | + | 405 | WP_000023761.1 | VOC family protein | - |
| IR04_RS08695 () | 772323..773024 | - | 702 | WP_001901434.1 | helix-turn-helix transcriptional regulator | - |
| IR04_RS08700 () | 773124..773420 | - | 297 | WP_001919795.1 | DUF1801 domain-containing protein | - |
| IR04_RS08705 () | 773557..773967 | - | 411 | WP_000592337.1 | helix-turn-helix transcriptional regulator | - |
| IR04_RS08710 () | 774165..774560 | - | 396 | WP_000096366.1 | hypothetical protein | - |
| IR04_RS08715 () | 774695..775168 | - | 474 | WP_000777554.1 | Dihydrofolate reductase type 1 | ARG |
| IR04_RS08720 () | 775456..776415 | + | 960 | WP_000198593.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| IR04_RS08725 () | 776672..777616 | + | 945 | WP_001260107.1 | thioredoxin family protein | - |
| IR04_RS08730 () | 777619..779007 | + | 1389 | WP_000755289.1 | conjugal transfer protein TraH | - |
| IR04_RS08735 () | 779011..782580 | + | 3570 | WP_000263683.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| IR04_RS08740 () | 782613..783044 | - | 432 | WP_000183214.1 | hypothetical protein | - |
| IR04_RS08745 () | 783102..783635 | - | 534 | WP_000566755.1 | hypothetical protein | - |
| IR04_RS08750 () | 783632..783931 | - | 300 | WP_000210564.1 | flagellar transcriptional regulator FlhD | - |
| IR04_RS08755 () | 783928..784476 | - | 549 | WP_000848909.1 | lytic transglycosylase domain-containing protein | - |
| IR04_RS08760 () | 784463..785071 | - | 609 | WP_001918295.1 | hypothetical protein | - |
| IR04_RS08765 () | 785112..785981 | - | 870 | WP_001205850.1 | hypothetical protein | - |
| IR04_RS08770 () | 786037..786288 | - | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| IR04_RS08775 () | 786406..787053 | + | 648 | WP_000854920.1 | LexA family transcriptional regulator | - |
| IR04_RS08780 () | 787310..788899 | + | 1590 | WP_000013192.1 | peptide chain release factor 3 | - |
| IR04_RS08785 () | 789021..790292 | - | 1272 | WP_000597951.1 | ATP-dependent RNA helicase SrmB | - |
| IR04_RS08790 () | 790380..791102 | - | 723 | WP_000856169.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| IR04_RS08795 () | 791411..792724 | + | 1314 | WP_000815019.1 | branched-chain amino acid transport system II carrier protein | - |
| IR04_RS08800 () | 792894..793992 | + | 1099 | WP_010895430.1 | peptide chain release factor 2 | - |
| IR04_RS08805 () | 794023..795555 | + | 1533 | WP_000128764.1 | lysine--tRNA ligase | - |
| IR04_RS08810 () | 795829..797163 | + | 1335 | WP_000107102.1 | Transcriptional regulatory protein ZraR | VF |
| IR04_RS08815 () | 797741..797992 | + | 252 | WP_001249919.1 | hypothetical protein | - |
| IR04_RS08820 () | 798030..799064 | - | 1035 | WP_001200442.1 | NADP(H)-dependent aldo-keto reductase | - |
| IR04_RS08825 () | 799281..799946 | - | 666 | WP_000801223.1 | DNA mismatch repair endonuclease MutH | - |
| IR04_RS08835 () | 800577..801095 | + | 519 | WP_001911254.1 | RNA pyrophosphohydrolase | - |
| IR04_RS08840 () | 801098..803344 | + | 2247 | WP_000952226.1 | phosphoenolpyruvate--protein phosphotransferase | - |
| IR04_RS08845 () | 803354..804148 | + | 795 | WP_001019422.1 | sulfite exporter TauE/SafE family protein | - |
| IR04_RS08850 () | 804177..804992 | + | 816 | WP_001135560.1 | prolipoprotein diacylglyceryl transferase | - |
| IR04_RS08855 () | 805002..805853 | + | 852 | WP_001250353.1 | thymidylate synthase | - |
| IR04_RS08860 () | 805946..807095 | - | 1150 | Protein_699 | Na/Pi cotransporter family protein | - |
| IR04_RS08865 () | 807490..808380 | + | 891 | WP_000018876.1 | Transcriptional activator protein NhaR | VF |
| IR04_RS08870 () | 808603..808905 | + | 303 | WP_001053149.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| IR04_RS08875 () | 808974..809234 | - | 261 | WP_000002742.1 | 30S ribosomal protein S20 | - |
| IR04_RS08880 () | 809492..811054 | + | 1563 | WP_001911253.1 | murein biosynthesis integral membrane protein MurJ | - |
| IR04_RS08885 () | 811123..812091 | + | 969 | WP_000420406.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| IR04_RS08890 () | 812122..814971 | + | 2850 | WP_000006088.1 | isoleucine--tRNA ligase | - |
| IR04_RS08895 () | 814987..815502 | + | 516 | WP_000071968.1 | Lipoprotein signal peptidase | VF |
| IR04_RS08900 () | 815665..816099 | + | 435 | WP_001068088.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| IR04_RS08905 () | 816134..817096 | + | 963 | WP_001883831.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| IR04_RS08910 () | 817233..818717 | - | 1485 | WP_000964317.1 | carbon starvation protein A | - |
| IR04_RS08915 () | 818970..819311 | + | 342 | WP_001883835.1 | DUF2799 domain-containing protein | - |
| IR04_RS08920 () | 819330..821126 | + | 1797 | WP_000544193.1 | sodium:proton antiporter | - |
| IR04_RS08925 () | 821150..822073 | - | 924 | WP_000180252.1 | N-acetylmuramic acid 6-phosphate etherase | - |
| IR04_RS08930 () | 822091..823203 | - | 1113 | WP_000840717.1 | anhydro-N-acetylmuramic acid kinase | - |
| IR04_RS08935 () | 823309..824301 | + | 993 | WP_000529115.1 | beta-N-acetylhexosaminidase | - |
| IR04_RS08940 () | 824328..825041 | - | 714 | WP_000947378.1 | Transcriptional regulatory protein BtsR | VF |
| IR04_RS08945 () | 825051..826727 | - | 1677 | WP_000364257.1 | Sensor histidine kinase BtsS | VF |
| IR04_RS08950 () | 826969..828042 | + | 1074 | WP_000747937.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| IR04_RS08955 () | 828055..829182 | + | 1128 | WP_000257629.1 | T-protein | VF |
| IR04_RS08960 () | 829249..829620 | - | 372 | WP_000570783.1 | PilZ domain-containing protein | - |
| IR04_RS08965 () | 829791..831458 | - | 1668 | WP_000852865.1 | energy-dependent translational throttle protein EttA | - |
| IR04_RS08970 () | 831820..833766 | + | 1947 | WP_000197615.1 | murein transglycosylase | - |
| IR04_RS08975 () | 833821..834132 | + | 312 | WP_000250616.1 | trp operon repressor | - |
| IR04_RS08980 () | 834210..834734 | - | 525 | WP_001226222.1 | inosine/xanthosine triphosphatase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|