MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 58317 bp
Accession: NZ_CP009039 Location: 1..58317 Organism: Xanthomonas citri pv. citri strain AW16 Replicon: plasmid pXCAW58
Accession: NZ_CP009039 Location: 1..58317 Organism: Xanthomonas citri pv. citri strain AW16 Replicon: plasmid pXCAW58
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMD06_RS00085 () | 131..1054 | + | 924 | WP_003491216.1 | Tn3 family transposase TnpR_ISXc4 | Transposase |
| AMD06_RS25410 () | 1435..1635 | + | 201 | WP_005934416.1 | IS66 family transposase ISAzo15 | Transposase |
| AMD06_RS23210 () | 1756..2307 | - | 552 | WP_078514874.1 | type III effector | - |
| AMD06_RS00100 () | 2736..3790 | - | 1055 | Protein_3 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| AMD06_RS25875 () | 3983..4491 | + | 509 | Protein_4 | Tn3 family transposase tnpS_TnXax1 | Transposase |
| AMD06_RS23215 () | 4563..5677 | + | 1115 | WP_167325139.1 | IS3 family transposase ISXac4 | Transposase |
| AMD06_RS00120 () | 5691..6116 | + | 426 | Protein_6 | Tn3 family transposase tnpS_TnXax1 | Transposase |
| AMD06_RS00125 () | 6161..9121 | + | 2961 | WP_015472939.1 | Tn3 family transposase TnpA_TnXo19 | Transposase |
| AMD06_RS23220 () | 9288..9592 | - | 305 | Protein_8 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| AMD06_RS00130 () | 9576..10178 | - | 603 | WP_042809799.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| AMD06_RS00135 () | 10384..10641 | + | 258 | WP_011052949.1 | antitoxin | Antitoxin Detail |
| AMD06_RS00140 () | 10641..10973 | + | 333 | WP_015463824.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| AMD06_RS25420 () | 10996..11247 | + | 252 | WP_125459571.1 | hypothetical protein | - |
| AMD06_RS00145 () | 11244..11456 | + | 213 | WP_011052947.1 | hypothetical protein | - |
| AMD06_RS00150 () | 11446..11982 | + | 537 | WP_015463823.1 | plasmid pRiA4b ORF-3 family protein | - |
| AMD06_RS25425 () | 12272..12493 | + | 222 | WP_011052944.1 | hypothetical protein | - |
| AMD06_RS23230 () | 12739..16326 | + | 3588 | WP_015472941.1 | TAL effector repeat-containing protein | - |
| AMD06_RS00170 () | 16445..17368 | - | 924 | WP_003491216.1 | Tn3 family transposase TnpR_ISXc4 | Transposase |
| AMD06_RS00175 () | 17583..17822 | + | 240 | WP_003491212.1 | ribbon-helix-helix domain-containing protein | - |
| AMD06_RS00180 () | 17822..18241 | + | 420 | WP_003491210.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| AMD06_RS00185 () | 18246..21221 | + | 2976 | WP_011345576.1 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| AMD06_RS00190 () | 21240..21938 | + | 699 | WP_015472973.1 | UPF0149 family protein | - |
| AMD06_RS23235 () | 21988..22406 | + | 419 | Protein_22 | IS3 family transposase ISXac3 | Transposase |
| AMD06_RS00205 () | 22505..25999 | - | 3495 | WP_015472945.1 | TAL effector repeat-containing protein | - |
| AMD06_RS00210 () | 27554..28142 | + | 589 | Protein_24 | IS3 family transposase ISXac3 | Transposase |
| AMD06_RS00215 () | 28173..28745 | - | 573 | WP_011053004.1 | Tn3 family transposase ISPsy42 | Transposase |
| AMD06_RS00220 () | 28936..29196 | + | 261 | WP_005917852.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| AMD06_RS00225 () | 29193..29594 | + | 402 | WP_011053002.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| AMD06_RS00230 () | 29619..29882 | + | 264 | WP_005917846.1 | hypothetical protein | - |
| AMD06_RS00235 () | 29889..31076 | + | 1188 | WP_011053001.1 | zeta toxin family protein | - |
| AMD06_RS00240 () | 31356..32582 | + | 1227 | WP_015472949.1 | plasmid replication initiator protein | - |
| AMD06_RS00245 () | 33308..34075 | + | 768 | WP_040237366.1 | ParA family protein | - |
| AMD06_RS00250 () | 34089..35120 | + | 1032 | WP_011052997.1 | ParB/RepB/Spo0J family partition protein | - |
| AMD06_RS00255 () | 35172..35501 | + | 330 | WP_011052996.1 | partition gene repressor | - |
| AMD06_RS00260 () | 35505..35741 | + | 237 | WP_015462622.1 | Wgr family protein | - |
| AMD06_RS00270 () | 35856..36943 | + | 1088 | WP_087947478.1 | IS3 family transposase ISXac2 | Transposase |
| AMD06_RS25435 () | 37108..37341 | - | 234 | WP_040107540.1 | hypothetical protein | - |
| AMD06_RS00280 () | 37636..37932 | + | 297 | WP_040237442.1 | hypothetical protein | - |
| AMD06_RS00285 () | 38050..38832 | - | 783 | WP_015471496.1 | IS21 family transposase ISXci1 | Transposase |
| AMD06_RS00290 () | 38832..39842 | - | 1011 | WP_015471495.1 | IS21 family transposase ISXci1 | Transposase |
| AMD06_RS00295 () | 39969..40280 | + | 312 | WP_015472954.1 | Tn3 family transposase TnpR_ISXc4 | Transposase |
| AMD06_RS00300 () | 40443..41162 | + | 720 | WP_015472955.1 | serine protease | - |
| AMD06_RS00305 () | 41232..42170 | + | 939 | WP_015472956.1 | replication protein | - |
| AMD06_RS00310 () | 43002..43445 | + | 444 | WP_015472958.1 | hypothetical protein | - |
| AMD06_RS00315 () | 43446..43724 | + | 279 | WP_015472959.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| AMD06_RS00320 () | 43953..44675 | + | 723 | WP_015472960.1 | YfbU family protein | - |
| AMD06_RS00325 () | 44774..45046 | - | 273 | Protein_46 | IS607 family transposase ISCARN56 | Transposase |
| AMD06_RS23270 () | 45049..45285 | - | 237 | Protein_47 | MerR family DNA-binding transcriptional regulator | - |
| AMD06_RS00330 () | 45273..45602 | - | 330 | WP_040237395.1 | hypothetical protein | - |
| AMD06_RS00335 () | 45629..46315 | - | 687 | WP_015472963.1 | hypothetical protein | - |
| AMD06_RS00340 () | 46312..46938 | - | 627 | WP_015472964.1 | hypothetical protein | - |
| AMD06_RS00345 () | 46935..48572 | - | 1638 | WP_015472965.1 | type IV secretion system DNA-binding domain-containing protein | - |
| AMD06_RS00350 () | 48577..49275 | - | 699 | WP_134952603.1 | hypothetical protein | - |
| AMD06_RS00355 () | 49288..49992 | - | 705 | WP_015472967.1 | hypothetical protein | - |
| AMD06_RS23275 () | 50001..50405 | - | 405 | WP_134952602.1 | mobilization protein MobC | - |
| AMD06_RS00360 () | 50779..51111 | + | 333 | WP_015472969.1 | mobilization protein MobB | - |
| AMD06_RS00365 () | 51116..52996 | + | 1881 | WP_049811795.1 | Protein TraI | Relaxase |
| AMD06_RS00370 () | 53007..53402 | + | 396 | WP_015472971.1 | hypothetical protein | - |
| AMD06_RS00375 () | 53477..53680 | + | 204 | WP_015472972.1 | hypothetical protein | - |
| AMD06_RS00380 () | 53878..54576 | - | 699 | WP_015472973.1 | UPF0149 family protein | - |
| AMD06_RS00385 () | 54595..57570 | - | 2976 | WP_011345576.1 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| AMD06_RS00390 () | 57575..57994 | - | 420 | WP_003491210.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| AMD06_RS00395 () | 57994..58233 | - | 240 | WP_003491212.1 | ribbon-helix-helix domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|