MGE detailed information
MGE type: Prophage MGE length: 23137 bp
Accession: NZ_CP008943 Location: 3601397..3624533 Organism: Yersinia pseudotuberculosis strain ATCC 6904 Replicon: chromosome
Accession: NZ_CP008943 Location: 3601397..3624533 Organism: Yersinia pseudotuberculosis strain ATCC 6904 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DJ40_RS16205 () | 3597873..3598364 | + | 492 | WP_002210014.1 | Hcp family type VI secretion system effector | - |
| DJ40_RS16210 () | 3598752..3601400 | + | 2649 | WP_038400934.1 | type VI secretion system ATPase TssH | - |
| DJ40_RS16215 () | 3601397..3603745 | + | 2349 | WP_038400935.1 | hypothetical protein | VF |
| DJ40_RS16220 () | 3603761..3606058 | + | 2298 | WP_038400937.1 | M23 family metallopeptidase | - |
| DJ40_RS16225 () | 3606045..3606812 | + | 768 | WP_002210008.1 | hypothetical protein | - |
| DJ40_RS23345 () | 3606908..3607483 | + | 576 | Protein_3092 | IS1-like element ISYps7 family transposase | - |
| DJ40_RS23745 () | 3607562..3607762 | + | 201 | WP_144243027.1 | hypothetical protein | - |
| DJ40_RS16240 () | 3608107..3608721 | + | 615 | WP_038400939.1 | hypothetical protein | VF |
| DJ40_RS16245 () | 3608736..3610958 | + | 2223 | WP_002210011.1 | M23 family metallopeptidase | - |
| DJ40_RS16250 () | 3610959..3611450 | + | 492 | WP_016257413.1 | hypothetical protein | - |
| DJ40_RS16255 () | 3611664..3611858 | + | 195 | WP_002216110.1 | hypothetical protein | - |
| DJ40_RS23350 () | 3611887..3612584 | + | 698 | WP_115027165.1 | IS1 family transposase ISYps7 | Transposase |
| DJ40_RS23750 () | 3612648..3612848 | + | 201 | WP_144243028.1 | hypothetical protein | - |
| DJ40_RS16270 () | 3613193..3613828 | + | 636 | WP_038400942.1 | hypothetical protein | VF |
| DJ40_RS16275 () | 3613855..3614160 | + | 306 | Protein_3101 | IS91 family transposase ISSde12 | Transposase |
| DJ40_RS16280 () | 3614618..3614905 | - | 288 | WP_012104592.1 | helix-turn-helix transcriptional regulator | - |
| DJ40_RS16285 () | 3614892..3615215 | - | 324 | WP_004722490.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| DJ40_RS16290 () | 3615413..3616279 | - | 867 | Protein_3104 | DUF4942 domain-containing protein | - |
| DJ40_RS16295 () | 3616363..3616695 | - | 333 | WP_038400945.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| DJ40_RS16300 () | 3616707..3617063 | - | 357 | WP_038400946.1 | TA system toxin CbtA family protein | Toxin Detail |
| DJ40_RS16305 () | 3617119..3617451 | - | 333 | WP_049862791.1 | hypothetical protein | - |
| DJ40_RS16310 () | 3617445..3617918 | - | 474 | WP_038401772.1 | DNA repair protein RadC | - |
| DJ40_RS16315 () | 3617950..3618381 | - | 432 | WP_038400948.1 | antirestriction protein | - |
| DJ40_RS16320 () | 3618989..3619540 | - | 552 | WP_038400949.1 | DUF4339 domain-containing protein | - |
| DJ40_RS16325 () | 3620278..3620739 | - | 462 | Protein_3111 | DUF932 domain-containing protein | - |
| DJ40_RS16330 () | 3621346..3621585 | + | 240 | WP_038400951.1 | hypothetical protein | - |
| DJ40_RS16335 () | 3621640..3621942 | + | 303 | WP_038400954.1 | hypothetical protein | VF |
| DJ40_RS16340 () | 3621911..3622879 | + | 969 | WP_038400955.1 | reverse transcriptase family protein | - |
| DJ40_RS16345 () | 3623032..3624030 | - | 999 | WP_038400957.1 | IS91 family transposase ISWz1 | Transposase |
| DJ40_RS16350 () | 3624027..3624533 | - | 507 | WP_080725858.1 | IS91 family transposase ISShvi3 | Transposase |
| DJ40_RS23755 () | 3624654..3625094 | + | 441 | WP_144243029.1 | hypothetical protein | - |
| DJ40_RS16355 () | 3625414..3625710 | + | 297 | WP_126287036.1 | permease | - |
| DJ40_RS16360 () | 3625969..3626310 | + | 342 | WP_038400961.1 | hypothetical protein | - |
| DJ40_RS16365 () | 3626681..3627697 | - | 1017 | WP_038400963.1 | MucR family transcriptional regulator | - |
| DJ40_RS22865 () | 3627687..3628757 | - | 1071 | WP_098087285.1 | type VI secretion system baseplate subunit TssG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|