MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 93833 bp
Accession: NZ_CP008745 Location: 1..93833 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain VNP20009 Replicon: plasmid pSLT_VNP20009
Accession: NZ_CP008745 Location: 1..93833 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain VNP20009 Replicon: plasmid pSLT_VNP20009
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DC51_RS23075 () | 94..378 | + | 285 | WP_000477658.1 | hypothetical protein | - |
| DC51_RS23080 () | 391..546 | + | 156 | WP_000983042.1 | hypothetical protein | - |
| DC51_RS23085 () | 712..1154 | + | 443 | Protein_2 | phospholipase | - |
| DC51_RS23090 () | 1333..1599 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| DC51_RS23100 () | 1849..1926 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| DC51_RS23105 () | 1907..2788 | + | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| DC51_RS23110 () | 3648..3869 | + | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| DC51_RS23115 () | 3966..4724 | - | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| DC51_RS23120 () | 4991..5548 | - | 558 | WP_000725062.1 | complement resistance protein Rck | - |
| DC51_RS23125 () | 5638..6537 | - | 900 | WP_010999938.1 | YjiK family protein | - |
| DC51_RS25925 () | 6534..6680 | - | 147 | WP_001192557.1 | hypothetical protein | - |
| DC51_RS23130 () | 6670..7323 | - | 654 | WP_000178592.1 | DsbA family protein | - |
| DC51_RS23135 () | 7568..7918 | - | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| DC51_RS23140 () | 7903..8115 | - | 213 | WP_000004313.1 | transcriptional regulator PefI | - |
| DC51_RS23145 () | 8547..9422 | - | 876 | WP_014343944.1 | hypothetical protein | - |
| DC51_RS23150 () | 9675..10232 | - | 558 | WP_010999940.1 | membrane protein | - |
| DC51_RS23155 () | 10247..10939 | - | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| DC51_RS23160 () | 10932..13340 | - | 2409 | WP_000007893.1 | outer membrane usher protein PefC | - |
| DC51_RS23165 () | 13568..14086 | - | 519 | WP_000748205.1 | major pilin PefA | - |
| DC51_RS23170 () | 14361..14663 | - | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| DC51_RS23175 () | 15382..15763 | + | 382 | Protein_20 | YgiW/YdeI family stress tolerance OB fold protein | - |
| DC51_RS25930 () | 15932..16376 | + | 445 | Protein_21 | site-specific integrase | - |
| DC51_RS23185 () | 16635..17624 | - | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| DC51_RS25660 () | 18118..18414 | - | 297 | WP_001687482.1 | hypothetical protein | - |
| DC51_RS23195 () | 18898..19419 | - | 522 | WP_010999942.1 | hypothetical protein | - |
| DC51_RS23200 () | 20095..20313 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| DC51_RS23205 () | 20315..20620 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| DC51_RS23210 () | 20622..20912 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| DC51_RS23215 () | 20909..21430 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| DC51_RS23220 () | 21465..22247 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| DC51_RS23225 () | 22256..22969 | + | 714 | Protein_30 | EAL domain-containing protein | - |
| DC51_RS23230 () | 22973..23482 | + | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| DC51_RS23235 () | 23476..23961 | + | 486 | WP_000905606.1 | membrane protein | - |
| DC51_RS25935 () | 24238..24525 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| DC51_RS23245 () | 24681..25241 | + | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| DC51_RS23250 () | 25308..25658 | - | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| DC51_RS25195 () | 25715..26139 | + | 425 | Protein_36 | IS200/IS605 family transposase | - |
| DC51_RS23260 () | 26266..26916 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| DC51_RS23265 () | 27177..27902 | - | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| DC51_RS23270 () | 28183..29958 | - | 1776 | WP_001676648.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| DC51_RS26005 () | 30010..30177 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| DC51_RS23275 () | 30140..30907 | - | 768 | WP_001526990.1 | virulence protein SpvA | - |
| DC51_RS23280 () | 31081..31245 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| DC51_RS23285 () | 31419..32312 | - | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| DC51_RS23290 () | 32921..33958 | + | 1038 | WP_001121399.1 | IS630 family transposase | - |
| DC51_RS23295 () | 34147..35172 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| DC51_RS23300 () | 35105..36769 | - | 1665 | WP_000098783.1 | IS481 family transposase | - |
| DC51_RS23305 () | 36753..37313 | - | 561 | WP_001240331.1 | recombinase family protein | - |
| DC51_RS23310 () | 37520..38260 | - | 741 | WP_001541566.1 | carbonic anhydrase | - |
| DC51_RS23315 () | 38915..39403 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| DC51_RS23320 () | 39662..40777 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| DC51_RS23325 () | 40863..41279 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| DC51_RS23330 () | 41463..41798 | + | 336 | WP_001527010.1 | hypothetical protein | - |
| DC51_RS23335 () | 41855..42421 | + | 567 | WP_001541562.1 | DUF2913 family protein | - |
| DC51_RS23340 () | 42453..43394 | - | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| DC51_RS23345 () | 43809..45014 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| DC51_RS23350 () | 45014..45988 | + | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| DC51_RS23355 () | 46070..47344 | - | 1275 | WP_000457541.1 | Y-family DNA polymerase | - |
| DC51_RS23360 () | 47344..47766 | - | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| DC51_RS25670 () | 48277..48747 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| DC51_RS23370 () | 48740..49096 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| DC51_RS23380 () | 49478..50158 | + | 681 | WP_000088645.1 | DNA methylase | - |
| DC51_RS23385 () | 50158..50379 | + | 222 | WP_001109588.1 | hypothetical protein | - |
| DC51_RS23390 () | 50435..50848 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| DC51_RS23395 () | 50920..51684 | + | 765 | WP_001246548.1 | membrane protein | - |
| DC51_RS23400 () | 52180..52614 | + | 435 | WP_001200150.1 | antirestriction protein | - |
| DC51_RS23405 () | 52681..53115 | + | 435 | WP_000274533.1 | DUF1380 family protein | - |
| DC51_RS23410 () | 53351..53674 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| DC51_RS23420 () | 54375..54893 | + | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| DC51_RS23425 () | 54948..55190 | + | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| DC51_RS23430 () | 55259..57256 | + | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| DC51_RS23435 () | 57296..57730 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| DC51_RS23440 () | 57727..58464 | + | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| DC51_RS26010 () | 58713..58871 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| DC51_RS26015 () | 58974..59792 | + | 819 | Protein_74 | DUF945 domain-containing protein | - |
| DC51_RS23455 () | 60103..60573 | - | 471 | WP_001526856.1 | transglycosylase SLT domain-containing protein | - |
| DC51_RS23460 () | 60988..61368 | + | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| DC51_RS23465 () | 61561..62247 | + | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| DC51_RS25230 () | 62341..62568 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| DC51_RS23470 () | 62610..62972 | + | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| DC51_RS23475 () | 62987..63298 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| DC51_RS23480 () | 63320..63886 | + | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| DC51_RS23485 () | 63873..64613 | + | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| DC51_RS23490 () | 64613..66034 | + | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| DC51_RS23495 () | 66024..66621 | + | 598 | Protein_84 | conjugal transfer protein TraP | - |
| DC51_RS23500 () | 66599..66844 | + | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| DC51_RS23505 () | 66841..67356 | + | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| DC51_RS23510 () | 67491..67712 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| DC51_RS23515 () | 67705..68172 | + | 468 | WP_000549562.1 | hypothetical protein | - |
| DC51_RS23520 () | 68289..68552 | + | 264 | WP_001239255.1 | hypothetical protein | - |
| DC51_RS23525 () | 68568..71216 | + | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| DC51_RS23530 () | 71191..71577 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| DC51_RS23535 () | 71574..72206 | + | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| DC51_RS23540 () | 72203..73195 | + | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| DC51_RS23545 () | 73214..73522 | + | 309 | WP_010999945.1 | hypothetical protein | - |
| DC51_RS23550 () | 73507..74145 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| DC51_RS23555 () | 74182..74601 | + | 420 | WP_001229397.1 | HNH endonuclease | - |
| DC51_RS23560 () | 74598..76424 | + | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| DC51_RS23565 () | 76435..76650 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| DC51_RS23570 () | 76662..77411 | + | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| DC51_RS23575 () | 77625..77918 | + | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| DC51_RS23580 () | 77905..78453 | + | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| DC51_RS23585 () | 78443..79825 | + | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| DC51_RS23590 () | 79822..82644 | + | 2823 | WP_001007086.1 | conjugal transfer mating pair stabilization protein TraG | - |
| DC51_RS23595 () | 82660..83154 | + | 495 | WP_010999946.1 | entry exclusion protein | - |
| DC51_RS23600 () | 83190..83921 | + | 732 | WP_000782438.1 | complement resistance protein TraT | - |
| DC51_RS23605 () | 84298..86460 | + | 2163 | WP_000009318.1 | type IV conjugative transfer system coupling protein TraD | - |
| DC51_RS23610 () | 86469..86867 | - | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | - |
| DC51_RS23615 () | 86867..87094 | - | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | - |
| DC51_RS23620 () | 87176..92434 | + | 5259 | WP_000986921.1 | conjugative transfer relaxase/helicase TraI | - |
| DC51_RS23625 () | 92454..93194 | + | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| DC51_RS23630 () | 93249..93812 | + | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|