MGE detailed information
MGE type: Genomic_island MGE length: 44845 bp
Accession: NZ_CP007634 Location: 338522..383366 Organism: Vibrio cholerae strain 2012EL-2176 Replicon: chromosome
Accession: NZ_CP007634 Location: 338522..383366 Organism: Vibrio cholerae strain 2012EL-2176 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EN18_RS01500 () | 334896..335579 | - | 684 | WP_000841479.1 | MFS transporter | - |
| EN18_RS01510 () | 335802..337481 | + | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| EN18_RS01515 () | 337679..338188 | + | 510 | WP_001077909.1 | hypothetical protein | - |
| EN18_RS01520 () | 338522..339226 | - | 705 | WP_001880605.1 | NERD domain-containing protein | - |
| EN18_RS01525 () | 339296..342232 | - | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| EN18_RS01530 () | 342236..342814 | - | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| EN18_RS01535 () | 343242..343709 | - | 468 | WP_000804849.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| EN18_RS01540 () | 343706..345067 | - | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| EN18_RS01550 () | 345671..346648 | + | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| EN18_RS20125 () | 346674..347354 | - | 681 | Protein_296 | IS5 family transposase | - |
| EN18_RS01565 () | 347696..349216 | - | 1521 | WP_000640055.1 | aldehyde dehydrogenase | - |
| EN18_RS01570 () | 349396..352437 | + | 3042 | WP_001880619.1 | fibronectin type III domain-containing protein | - |
| EN18_RS01575 () | 352550..357151 | + | 4602 | WP_000482254.1 | membrane protein | - |
| EN18_RS01580 () | 357148..358086 | + | 939 | WP_001232137.1 | hypothetical protein | - |
| EN18_RS01585 () | 358196..358690 | + | 495 | WP_000218964.1 | thiol peroxidase | - |
| EN18_RS01590 () | 358966..360828 | - | 1863 | WP_000591844.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| EN18_RS01595 () | 361270..361935 | + | 666 | WP_000542596.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| EN18_RS01600 () | 361920..362330 | + | 411 | WP_000549073.1 | toxin-coregulated pilus protein TcpH | - |
| EN18_RS01605 () | 362874..363548 | + | 675 | WP_001176375.1 | toxin-coregulated pilus major pilin TcpA | - |
| EN18_RS01610 () | 363628..364920 | + | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| EN18_RS01615 () | 364920..365372 | + | 453 | WP_000742753.1 | toxin-coregulated pilus protein TcpQ | - |
| EN18_RS01620 () | 365375..366844 | + | 1470 | WP_000750979.1 | toxin-coregulated pilus secretin TcpC | - |
| EN18_RS20130 () | 366837..367292 | + | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| EN18_RS01630 () | 367280..368116 | + | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| EN18_RS01635 () | 368132..368590 | + | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| EN18_RS01640 () | 368580..370091 | + | 1512 | WP_000020697.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| EN18_RS01645 () | 370066..371088 | + | 1023 | WP_000691946.1 | toxin-coregulated pilus assembly protein TcpE | - |
| EN18_RS01650 () | 371098..372114 | + | 1017 | WP_001269573.1 | colonization factor TcpF | - |
| EN18_RS01655 () | 372321..373151 | + | 831 | WP_000579582.1 | pilus/toxin transcriptional regulator ToxT | - |
| EN18_RS01660 () | 373151..373912 | + | 762 | WP_000456980.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| EN18_RS01665 () | 373919..375799 | + | 1881 | WP_000672505.1 | methyl-accepting chemotaxis protein AcfB | - |
| EN18_RS01670 () | 375805..376574 | + | 770 | Protein_318 | accessory colonization factor AcfC | - |
| EN18_RS01675 () | 376590..377063 | + | 474 | WP_000287237.1 | RDD family protein | - |
| EN18_RS01680 () | 377072..377980 | + | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| EN18_RS01685 () | 377983..378630 | - | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| EN18_RS01690 () | 378804..383366 | + | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| EN18_RS20135 () | 383997..384233 | - | 237 | WP_001919887.1 | tyrosine-type recombinase/integrase | - |
| EN18_RS20955 () | 384876..385276 | - | 401 | Protein_324 | transposase | - |
| EN18_RS01700 () | 385281..386549 | - | 1269 | WP_001107728.1 | tyrosine-type recombinase/integrase | - |
| EN18_RS01705 () | 387151..387636 | - | 486 | WP_000162689.1 | SsrA-binding protein SmpB | - |
| EN18_RS01710 () | 387820..388254 | + | 435 | WP_000815876.1 | type II toxin-antitoxin system RatA family toxin | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|