MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 91739 bp
Accession: NZ_CP007582 Location: 1..91739 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain 138736 Replicon: plasmid unnamed
Accession: NZ_CP007582 Location: 1..91739 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain 138736 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CY43_RS24005 () | 95..379 | + | 285 | WP_000477658.1 | hypothetical protein | - |
| CY43_RS24010 () | 392..547 | + | 156 | WP_000983042.1 | hypothetical protein | - |
| CY43_RS24015 () | 713..1155 | + | 443 | Protein_2 | phospholipase | - |
| CY43_RS24020 () | 1334..1600 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| CY43_RS24030 () | 1850..1927 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| CY43_RS24035 () | 1908..2789 | + | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| CY43_RS26200 () | 3649..3870 | + | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| CY43_RS24040 () | 3967..4725 | - | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| CY43_RS24045 () | 4992..5549 | - | 558 | WP_000725062.1 | complement resistance protein Rck | - |
| CY43_RS24050 () | 5639..6538 | - | 900 | WP_010999938.1 | YjiK family protein | - |
| CY43_RS27035 () | 6535..6681 | - | 147 | WP_001192557.1 | hypothetical protein | - |
| CY43_RS24055 () | 6671..7324 | - | 654 | WP_000178592.1 | DsbA family protein | - |
| CY43_RS24060 () | 7569..7919 | - | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| CY43_RS24065 () | 7904..8116 | - | 213 | WP_000004313.1 | transcriptional regulator PefI | - |
| CY43_RS24070 () | 8548..9423 | - | 876 | WP_014343944.1 | hypothetical protein | - |
| CY43_RS24075 () | 9676..10233 | - | 558 | WP_010999940.1 | membrane protein | - |
| CY43_RS24080 () | 10248..10940 | - | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| CY43_RS24085 () | 10933..13341 | - | 2409 | WP_000007893.1 | outer membrane usher protein PefC | - |
| CY43_RS24090 () | 13569..14087 | - | 519 | WP_000748205.1 | major pilin PefA | - |
| CY43_RS24095 () | 14362..14664 | - | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| CY43_RS24100 () | 15383..15764 | + | 382 | Protein_20 | YgiW/YdeI family stress tolerance OB fold protein | - |
| CY43_RS27040 () | 15933..16377 | + | 445 | Protein_21 | site-specific integrase | - |
| CY43_RS24110 () | 16636..17625 | - | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| CY43_RS26705 () | 18119..18415 | - | 297 | WP_001687482.1 | hypothetical protein | - |
| CY43_RS24120 () | 18899..19420 | - | 522 | WP_010999942.1 | hypothetical protein | - |
| CY43_RS24125 () | 20096..20314 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| CY43_RS24130 () | 20316..20621 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| CY43_RS24135 () | 20623..20913 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| CY43_RS24140 () | 20910..21431 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| CY43_RS24145 () | 21466..22248 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| CY43_RS24150 () | 22257..22970 | + | 714 | Protein_30 | EAL domain-containing protein | - |
| CY43_RS24155 () | 22974..23483 | + | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| CY43_RS24160 () | 23477..23962 | + | 486 | WP_000905606.1 | membrane protein | - |
| CY43_RS27045 () | 24239..24526 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| CY43_RS24170 () | 24682..25242 | + | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| CY43_RS24175 () | 25309..25659 | - | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| CY43_RS26225 () | 25716..26140 | + | 425 | Protein_36 | IS200/IS605 family transposase | - |
| CY43_RS24185 () | 26267..26917 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| CY43_RS24190 () | 27178..27903 | - | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| CY43_RS24195 () | 28184..29959 | - | 1776 | WP_001676648.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| CY43_RS27190 () | 30011..30178 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| CY43_RS24200 () | 30141..30908 | - | 768 | WP_001526990.1 | virulence protein SpvA | - |
| CY43_RS24205 () | 31082..31246 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| CY43_RS24210 () | 31420..32313 | - | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| CY43_RS24215 () | 32922..33959 | + | 1038 | WP_001121399.1 | IS630 family transposase | - |
| CY43_RS24220 () | 34148..35173 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| CY43_RS24225 () | 35106..36770 | - | 1665 | WP_000098783.1 | IS481 family transposase | - |
| CY43_RS24230 () | 36754..37314 | - | 561 | WP_001240331.1 | recombinase family protein | - |
| CY43_RS24235 () | 37521..38261 | - | 741 | WP_001541566.1 | carbonic anhydrase | - |
| CY43_RS24240 () | 38916..39404 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| CY43_RS24245 () | 39663..40778 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| CY43_RS24250 () | 40864..41280 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| CY43_RS24255 () | 41464..41799 | + | 336 | WP_001527010.1 | hypothetical protein | - |
| CY43_RS24260 () | 41856..42422 | + | 567 | WP_001541562.1 | DUF2913 family protein | - |
| CY43_RS24265 () | 42454..43395 | - | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| CY43_RS24270 () | 43810..45015 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| CY43_RS24275 () | 45015..45989 | + | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| CY43_RS24280 () | 46071..47345 | - | 1275 | WP_022743179.1 | Y-family DNA polymerase | - |
| CY43_RS24285 () | 47345..47767 | - | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| CY43_RS26715 () | 48278..48748 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| CY43_RS24295 () | 48741..49097 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| CY43_RS24305 () | 49479..50159 | + | 681 | WP_000088645.1 | DNA methylase | - |
| CY43_RS24310 () | 50159..50380 | + | 222 | WP_001109588.1 | hypothetical protein | - |
| CY43_RS24315 () | 50436..50849 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| CY43_RS24320 () | 50921..51685 | + | 765 | WP_001246548.1 | membrane protein | - |
| CY43_RS24325 () | 52181..52615 | + | 435 | WP_001200150.1 | antirestriction protein | - |
| CY43_RS24330 () | 52682..53116 | + | 435 | WP_000274533.1 | DUF1380 family protein | - |
| CY43_RS24335 () | 53352..53675 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| CY43_RS27195 () | 53639..53890 | + | 252 | WP_157763129.1 | hypothetical protein | - |
| CY43_RS24345 () | 54484..54807 | + | 324 | Protein_69 | single-stranded DNA-binding protein SSB2 | - |
| CY43_RS24350 () | 54810..55892 | + | 1083 | Protein_70 | chromosome partitioning protein ParB | - |
| CY43_RS24355 () | 55932..56366 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| CY43_RS24360 () | 56363..57100 | + | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| CY43_RS27200 () | 57349..57507 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| CY43_RS27205 () | 57610..58428 | + | 819 | Protein_74 | DUF945 domain-containing protein | - |
| CY43_RS24375 () | 58739..59209 | - | 471 | WP_001526856.1 | transglycosylase SLT domain-containing protein | - |
| CY43_RS24380 () | 59624..60004 | + | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| CY43_RS24385 () | 60197..60883 | + | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| CY43_RS26260 () | 60978..61205 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| CY43_RS24390 () | 61247..61609 | + | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| CY43_RS24395 () | 61624..61935 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| CY43_RS24400 () | 61957..62523 | + | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| CY43_RS24405 () | 62510..63250 | + | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| CY43_RS24410 () | 63250..64671 | + | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| CY43_RS24415 () | 64661..65257 | + | 597 | WP_000527896.1 | conjugal transfer protein TraP | - |
| CY43_RS24420 () | 65235..65480 | + | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| CY43_RS24425 () | 65477..65992 | + | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CY43_RS24430 () | 66127..66348 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| CY43_RS24435 () | 66341..66808 | + | 468 | WP_000549562.1 | hypothetical protein | - |
| CY43_RS24440 () | 66925..67188 | + | 264 | WP_001239256.1 | hypothetical protein | - |
| CY43_RS24445 () | 67204..69024 | + | 1821 | WP_040122033.1 | TraC family protein | - |
| CY43_RS24450 () | 68999..69385 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| CY43_RS24455 () | 69382..70014 | + | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| CY43_RS24460 () | 70011..71003 | + | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| CY43_RS24465 () | 71022..71330 | + | 309 | WP_010999945.1 | hypothetical protein | - |
| CY43_RS24470 () | 71315..71953 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| CY43_RS24475 () | 71990..72409 | + | 420 | WP_001229397.1 | HNH endonuclease | - |
| CY43_RS24480 () | 72406..74232 | + | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| CY43_RS24485 () | 74243..74458 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| CY43_RS24490 () | 74470..75219 | + | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| CY43_RS24495 () | 75433..75726 | + | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| CY43_RS24500 () | 75713..76261 | + | 549 | WP_022743183.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| CY43_RS24505 () | 76251..77633 | + | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| CY43_RS24510 () | 77630..80452 | + | 2823 | WP_031603544.1 | conjugal transfer mating pair stabilization protein TraG | - |
| CY43_RS24515 () | 80468..80962 | + | 495 | WP_010999946.1 | entry exclusion protein | - |
| CY43_RS24520 () | 80998..81729 | + | 732 | WP_022743186.1 | complement resistance protein TraT | - |
| CY43_RS24525 () | 82106..84367 | + | 2262 | WP_022743189.1 | type IV conjugative transfer system coupling protein TraD | - |
| CY43_RS24530 () | 84376..84774 | - | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | - |
| CY43_RS24535 () | 84774..85001 | - | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | - |
| CY43_RS24540 () | 85083..90341 | + | 5259 | WP_022743192.1 | conjugative transfer relaxase/helicase TraI | - |
| CY43_RS24545 () | 90361..91101 | + | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| CY43_RS24550 () | 91156..91719 | + | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|