MGE detailed information
MGE type: Genomic_island MGE length: 40950 bp
Accession: NZ_CP006947 Location: 2179306..2220255 Organism: Vibrio cholerae O1 str. KW3 Replicon: chromosome
Accession: NZ_CP006947 Location: 2179306..2220255 Organism: Vibrio cholerae O1 str. KW3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N900_RS09965 () | 2174570..2179132 | - | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| N900_RS09970 () | 2179306..2179953 | + | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| N900_RS09975 () | 2179956..2180864 | - | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| N900_RS09980 () | 2180873..2181346 | - | 474 | WP_000287237.1 | RDD family protein | - |
| N900_RS09985 () | 2181362..2182131 | - | 770 | Protein_1918 | accessory colonization factor AcfC | - |
| N900_RS09990 () | 2182137..2184016 | - | 1880 | Protein_1919 | methyl-accepting chemotaxis protein AcfB | - |
| N900_RS09995 () | 2184024..2184785 | - | 762 | Protein_1920 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| N900_RS10000 () | 2184785..2185614 | - | 830 | Protein_1921 | pilus/toxin transcriptional regulator ToxT | - |
| N900_RS10005 () | 2185821..2186837 | - | 1017 | WP_001269573.1 | colonization factor TcpF | - |
| N900_RS10010 () | 2186847..2187869 | - | 1023 | WP_000691946.1 | toxin-coregulated pilus assembly protein TcpE | - |
| N900_RS10015 () | 2187844..2189355 | - | 1512 | WP_000020697.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| N900_RS10020 () | 2189345..2189803 | - | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| N900_RS10025 () | 2189819..2190655 | - | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| N900_RS19270 () | 2190643..2191098 | - | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| N900_RS10035 () | 2191091..2192560 | - | 1470 | WP_000750979.1 | toxin-coregulated pilus secretin TcpC | - |
| N900_RS10040 () | 2192563..2193015 | - | 453 | WP_000742753.1 | toxin-coregulated pilus protein TcpQ | - |
| N900_RS10045 () | 2193015..2194307 | - | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| N900_RS10050 () | 2194387..2195061 | - | 675 | WP_001176375.1 | toxin-coregulated pilus major pilin TcpA | - |
| N900_RS10055 () | 2195605..2196015 | - | 411 | WP_000549073.1 | toxin-coregulated pilus protein TcpH | - |
| N900_RS10060 () | 2196000..2196665 | - | 666 | WP_000542596.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| N900_RS10065 () | 2197107..2198969 | + | 1863 | WP_000591844.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| N900_RS10070 () | 2199245..2199739 | - | 495 | WP_000218964.1 | thiol peroxidase | - |
| N900_RS10075 () | 2199849..2200787 | - | 939 | WP_001232137.1 | hypothetical protein | - |
| N900_RS10080 () | 2200784..2205385 | - | 4602 | WP_000482254.1 | membrane protein | - |
| N900_RS10085 () | 2205498..2208538 | - | 3041 | Protein_1938 | fibronectin type III domain-containing protein | - |
| N900_RS10090 () | 2208718..2210238 | + | 1521 | WP_000640055.1 | aldehyde dehydrogenase | - |
| N900_RS19280 () | 2210580..2211260 | + | 681 | Protein_1940 | IS5 family transposase | - |
| N900_RS10105 () | 2211286..2212263 | - | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| N900_RS10115 () | 2212867..2214228 | + | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| N900_RS10120 () | 2214225..2214692 | + | 468 | WP_000804849.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| N900_RS10125 () | 2215120..2215698 | + | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| N900_RS10130 () | 2215702..2218638 | + | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| N900_RS10135 () | 2218708..2219412 | + | 705 | WP_001880605.1 | NERD domain-containing protein | - |
| N900_RS10140 () | 2219746..2220255 | - | 510 | WP_001077909.1 | hypothetical protein | - |
| N900_RS10145 () | 2220453..2222132 | - | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| N900_RS10155 () | 2222355..2223038 | + | 684 | WP_000841479.1 | MFS transporter | - |
| N900_RS10160 () | 2223106..2224722 | - | 1617 | WP_000620446.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|