MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 70508 bp
Accession: NZ_CP006791 Location: 1..70508 Organism: Yersinia pestis 2944 Replicon: plasmid pCD
Accession: NZ_CP006791 Location: 1..70508 Organism: Yersinia pestis 2944 Replicon: plasmid pCD
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M478_RS00575 () | 21..569 | + | 549 | WP_002213007.1 | hypothetical protein | VF |
| M478_RS23850 () | 728..1028 | + | 301 | Protein_1 | IS3 family transposase | - |
| M478_RS00580 () | 1174..1803 | + | 630 | WP_002229770.1 | hypothetical protein | - |
| M478_RS23855 () | 1910..3056 | + | 1147 | Protein_3 | IS3 family transposase | - |
| M478_RS00600 () | 3816..4982 | + | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| M478_RS00605 () | 4979..5944 | + | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| M478_RS24485 () | 6104..6340 | + | 237 | WP_154020274.1 | hypothetical protein | - |
| M478_RS24625 () | 6489..6662 | - | 174 | WP_002213357.1 | hypothetical protein | - |
| M478_RS23415 () | 6748..7040 | + | 293 | Protein_8 | IS6 family transposase ISEas1 | Transposase |
| M478_RS00615 () | 7206..7448 | + | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| M478_RS00620 () | 7441..7740 | + | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| M478_RS00625 () | 7880..8539 | - | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| M478_RS00630 () | 8733..9125 | + | 393 | WP_002213403.1 | YopE regulator | VF |
| M478_RS00635 () | 9188..9832 | - | 645 | Protein_13 | IS3 family transposase ISYen3 | Transposase |
| M478_RS00640 () | 9935..11107 | + | 1173 | WP_002220893.1 | IS21 family transposase IS21 | Transposase |
| M478_RS00645 () | 11107..11505 | + | 399 | Protein_15 | IS21 family transposase IS21 | Transposase |
| M478_RS00650 () | 11882..12307 | + | 426 | WP_002213267.1 | hypothetical protein | VF |
| M478_RS00665 () | 13654..13983 | - | 330 | WP_002229829.1 | hypothetical protein | - |
| M478_RS00670 () | 14122..14586 | - | 465 | WP_002224338.1 | hypothetical protein | - |
| M478_RS00675 () | 14605..15156 | - | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| M478_RS00680 () | 15320..17635 | + | 2316 | WP_002213256.1 | Tn3 family transposase ISEc63 | Transposase |
| M478_RS00685 () | 17668..18018 | - | 351 | Protein_22 | IS3 family transposase IS1351 | Transposase |
| M478_RS21960 () | 18618..19921 | + | 1304 | Protein_23 | Adhesin YadA | VF |
| M478_RS24630 () | 19991..20149 | + | 159 | Protein_24 | EamA family transporter | - |
| M478_RS00705 () | 20247..20516 | - | 270 | WP_042469136.1 | transposase | - |
| M478_RS00710 () | 20585..21043 | + | 459 | WP_002213246.1 | hypothetical protein | - |
| M478_RS00715 () | 21215..21532 | + | 318 | WP_002213244.1 | IS3 family transposase ISKpn37 | Transposase |
| M478_RS23865 () | 21556..21963 | + | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| M478_RS21970 () | 21946..22254 | - | 309 | Protein_29 | DDE-type integrase/transposase/recombinase | - |
| M478_RS00725 () | 22380..22628 | + | 249 | WP_002233137.1 | Phospholipase D | VF |
| M478_RS00730 () | 22766..23020 | + | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| M478_RS00735 () | 23262..23336 | + | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| M478_RS00740 () | 23317..24195 | + | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| M478_RS21980 () | 25368..25607 | + | 240 | WP_002213291.1 | hypothetical protein | - |
| M478_RS23425 () | 25785..26097 | + | 313 | Protein_35 | IS3 family transposase ISKpn37 | Transposase |
| M478_RS00750 () | 26353..26781 | + | 429 | WP_002233145.1 | hypothetical protein | VF |
| M478_RS00755 () | 26799..28997 | + | 2199 | WP_011114033.1 | Protein kinase YpkA | VF |
| M478_RS00760 () | 29393..30259 | + | 867 | WP_002224250.1 | Effector protein YopJ | VF |
| M478_RS00765 () | 30845..31423 | - | 579 | Protein_39 | IS3 family transposase ISYpe1 | Transposase |
| M478_RS00770 () | 31426..31659 | + | 234 | Protein_40 | transposase domain-containing protein | - |
| M478_RS00775 () | 31942..33348 | + | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| M478_RS21995 () | 33569..33841 | - | 273 | Protein_42 | transposase | - |
| M478_RS00780 () | 33860..34204 | - | 345 | Protein_43 | IS3 family transposase ISEca11 | Transposase |
| M478_RS00785 () | 34290..35312 | + | 1023 | WP_000255944.1 | IS21 family transposase IS100kyp | Transposase |
| M478_RS00790 () | 35309..36090 | + | 782 | Protein_45 | IS21 family transposase IS100 | Transposase |
| M478_RS23430 () | 36162..36847 | - | 686 | Protein_46 | IS3 family transposase ISEca11 | Transposase |
| M478_RS00810 () | 37395..37742 | - | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| M478_RS00815 () | 37967..38632 | - | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| M478_RS00820 () | 38578..39207 | - | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| M478_RS00825 () | 39207..39941 | - | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| M478_RS00830 () | 39948..40295 | - | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| M478_RS00835 () | 40296..40793 | - | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| M478_RS00840 () | 40790..41137 | - | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| M478_RS00845 () | 41139..41402 | - | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| M478_RS00850 () | 41403..41603 | - | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| M478_RS00855 () | 41600..42859 | - | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| M478_RS00860 () | 42856..44679 | - | 1824 | WP_002212923.1 | Yop proteins translocation protein C | VF |
| M478_RS00865 () | 44685..45098 | - | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| M478_RS00870 () | 45324..45422 | - | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| M478_RS00875 () | 45501..46316 | - | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| M478_RS00880 () | 46440..46835 | - | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| M478_RS00885 () | 47411..48475 | - | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| M478_RS00890 () | 48475..49260 | - | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| M478_RS00895 () | 49257..49523 | - | 267 | WP_002212945.1 | hypothetical protein | VF |
| M478_RS00900 () | 49525..50178 | - | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| M478_RS00905 () | 50175..51098 | - | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| M478_RS00910 () | 51095..52462 | - | 1368 | WP_002212950.1 | hypothetical protein | VF |
| M478_RS00915 () | 52462..52926 | - | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| M478_RS00920 () | 52923..54242 | - | 1320 | WP_002212955.1 | putative ATP synthase YscN | VF |
| M478_RS00925 () | 54440..55321 | + | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| M478_RS00930 () | 55302..55580 | + | 279 | WP_002212965.1 | Protein TyeA | VF |
| M478_RS00935 () | 55567..55938 | + | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| M478_RS00940 () | 55935..56303 | + | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| M478_RS00945 () | 56300..56644 | + | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| M478_RS00950 () | 56631..58745 | + | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| M478_RS00955 () | 58742..59182 | + | 441 | WP_002220918.1 | hypothetical protein | VF |
| M478_RS00960 () | 59224..59511 | + | 288 | WP_002212973.1 | hypothetical protein | VF |
| M478_RS00965 () | 59513..60493 | + | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| M478_RS00970 () | 60506..61012 | + | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| M478_RS00975 () | 60990..62195 | + | 1206 | WP_002212985.1 | Protein YopB | VF |
| M478_RS00980 () | 62214..63134 | + | 921 | WP_002212987.1 | Protein YopD | VF |
| M478_RS23435 () | 63571..63714 | - | 144 | Protein_82 | IS256 family transposase IS285 | Transposase |
| M478_RS23440 () | 63814..64451 | - | 638 | Protein_83 | IS6 family transposase | - |
| M478_RS00995 () | 64472..64681 | + | 210 | WP_002229781.1 | hypothetical protein | - |
| M478_RS01000 () | 65075..66304 | + | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| M478_RS01005 () | 66347..66664 | - | 318 | Protein_86 | IS256 family transposase ISSod4 | Transposase |
| M478_RS23880 () | 66546..66791 | - | 246 | WP_116442925.1 | transposase | - |
| M478_RS22015 () | 66794..67012 | + | 219 | Protein_88 | IS6 family transposase | - |
| M478_RS01010 () | 67540..67959 | - | 420 | WP_002222515.1 | hypothetical protein | - |
| M478_RS22020 () | 67977..68258 | - | 282 | Protein_90 | DDE-type integrase/transposase/recombinase | - |
| M478_RS01020 () | 68664..69062 | - | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| M478_RS01025 () | 69062..70030 | - | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|