MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 71522 bp
Accession: NZ_CP006780 Location: 1..71522 Organism: Yersinia pestis 1412 Replicon: plasmid pCD
Accession: NZ_CP006780 Location: 1..71522 Organism: Yersinia pestis 1412 Replicon: plasmid pCD
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M479_RS00760 () | 116..1375 | + | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| M479_RS00765 () | 1372..1572 | + | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| M479_RS00770 () | 1573..1836 | + | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| M479_RS00775 () | 1838..2185 | + | 348 | WP_011901822.1 | Putative Yop proteins translocation protein G | VF |
| M479_RS00780 () | 2182..2679 | + | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| M479_RS00785 () | 2680..3027 | + | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| M479_RS00790 () | 3034..3768 | + | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| M479_RS00795 () | 3768..4397 | + | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| M479_RS00800 () | 4343..5008 | + | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| M479_RS00805 () | 5233..5580 | + | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| M479_RS23795 () | 6128..6989 | + | 862 | Protein_11 | IS3 family transposase | - |
| M479_RS00825 () | 7113..8135 | + | 1023 | WP_011906282.1 | IS21 family transposase IS100kyp | Transposase |
| M479_RS00830 () | 8135..8914 | + | 780 | WP_001297096.1 | IS21 family transposase IS100kyp | Transposase |
| M479_RS00835 () | 8980..9117 | + | 138 | Protein_14 | transposase | - |
| M479_RS22110 () | 9136..9408 | + | 273 | Protein_15 | transposase | - |
| M479_RS00840 () | 9629..11035 | - | 1407 | WP_011901819.1 | Tyrosine-protein phosphatase YopH | VF |
| M479_RS00845 () | 11318..11551 | - | 234 | Protein_17 | transposase domain-containing protein | - |
| M479_RS00850 () | 11554..12132 | + | 579 | Protein_18 | IS3 family transposase ISYpe1 | Transposase |
| M479_RS00855 () | 12718..13584 | - | 867 | WP_002213287.1 | Effector protein YopJ | VF |
| M479_RS00860 () | 13980..16178 | - | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| M479_RS00865 () | 16196..16624 | - | 429 | WP_002233145.1 | hypothetical protein | VF |
| M479_RS23440 () | 16880..17192 | - | 313 | Protein_22 | IS3 family transposase ISKpn37 | Transposase |
| M479_RS22125 () | 17370..17609 | - | 240 | WP_002213291.1 | hypothetical protein | - |
| M479_RS00875 () | 18782..19660 | - | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| M479_RS00880 () | 19641..19715 | - | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| M479_RS00885 () | 19957..20211 | - | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| M479_RS00890 () | 20349..20597 | - | 249 | WP_002233137.1 | Phospholipase D | VF |
| M479_RS22135 () | 20723..21031 | + | 309 | Protein_28 | DDE-type integrase/transposase/recombinase | - |
| M479_RS23805 () | 21014..21421 | - | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| M479_RS00900 () | 21445..21762 | - | 318 | WP_002213008.1 | IS3 family transposase ISKpn37 | Transposase |
| M479_RS00905 () | 21934..22392 | - | 459 | WP_002213246.1 | hypothetical protein | - |
| M479_RS00910 () | 22461..22730 | + | 270 | WP_042469136.1 | transposase | - |
| M479_RS24495 () | 22828..22986 | - | 159 | Protein_33 | EamA family transporter | - |
| M479_RS22145 () | 23056..24359 | - | 1304 | Protein_34 | Adhesin YadA | VF |
| M479_RS00930 () | 24959..25309 | + | 351 | Protein_35 | IS3 family transposase IS1351 | Transposase |
| M479_RS00935 () | 25342..27657 | - | 2316 | WP_011901828.1 | Tn3 family transposase ISEc63 | Transposase |
| M479_RS00940 () | 27821..28372 | + | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| M479_RS00945 () | 28391..28855 | + | 465 | WP_002224338.1 | hypothetical protein | - |
| M479_RS00950 () | 28994..29323 | + | 330 | WP_002229829.1 | hypothetical protein | - |
| M479_RS00960 () | 29423..30522 | + | 1100 | WP_086016640.1 | IS3 family transposase ISYpe1 | Transposase |
| M479_RS00965 () | 30670..31095 | - | 426 | WP_002213267.1 | hypothetical protein | VF |
| M479_RS00970 () | 31472..31870 | - | 399 | Protein_42 | IS21 family transposase IS21 | Transposase |
| M479_RS00975 () | 31870..33042 | - | 1173 | WP_002220893.1 | IS21 family transposase IS21 | Transposase |
| M479_RS00980 () | 33145..33789 | + | 645 | Protein_44 | IS3 family transposase ISYen3 | Transposase |
| M479_RS00985 () | 33852..34244 | - | 393 | WP_002213403.1 | YopE regulator | VF |
| M479_RS00990 () | 34438..35097 | + | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| M479_RS00995 () | 35237..35536 | - | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| M479_RS01000 () | 35529..35771 | - | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| M479_RS23450 () | 35937..36229 | - | 293 | Protein_49 | IS6 family transposase ISEas1 | Transposase |
| M479_RS24505 () | 36317..36490 | + | 174 | WP_002213357.1 | hypothetical protein | - |
| M479_RS01005 () | 36945..37910 | - | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| M479_RS01010 () | 37907..39073 | - | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| M479_RS23815 () | 39833..40978 | - | 1146 | Protein_53 | IS3 family transposase | - |
| M479_RS01030 () | 41085..41714 | - | 630 | WP_002229770.1 | hypothetical protein | - |
| M479_RS23460 () | 41860..42153 | - | 294 | Protein_55 | IS3 family transposase | - |
| M479_RS01035 () | 42312..42860 | - | 549 | WP_002213007.1 | hypothetical protein | VF |
| M479_RS22185 () | 43360..44327 | + | 968 | Protein_57 | Cysteine protease YopT | VF |
| M479_RS01050 () | 44327..44725 | + | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| M479_RS22190 () | 45131..45412 | + | 282 | Protein_59 | DDE-type integrase/transposase/recombinase | - |
| M479_RS01060 () | 45430..45849 | + | 420 | WP_002222515.1 | hypothetical protein | - |
| M479_RS23820 () | 46377..46595 | - | 219 | Protein_61 | IS6 family transposase | - |
| M479_RS23825 () | 46598..46843 | + | 246 | WP_116442925.1 | transposase | - |
| M479_RS01065 () | 46725..47042 | + | 318 | Protein_63 | IS256 family transposase ISSod4 | Transposase |
| M479_RS01070 () | 47085..48314 | - | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| M479_RS01075 () | 48708..48917 | - | 210 | WP_002229781.1 | hypothetical protein | - |
| M479_RS23465 () | 48938..49575 | + | 638 | Protein_66 | IS6 family transposase | - |
| M479_RS01080 () | 49615..50822 | - | 1208 | Protein_67 | IS256 family transposase ISEc39 | Transposase |
| M479_RS01085 () | 51365..52285 | - | 921 | WP_002212987.1 | Protein YopD | VF |
| M479_RS01090 () | 52304..53509 | - | 1206 | WP_002212985.1 | Protein YopB | VF |
| M479_RS01095 () | 53487..53993 | - | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| M479_RS01100 () | 54006..54986 | - | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| M479_RS01105 () | 54988..55275 | - | 288 | WP_002212973.1 | hypothetical protein | VF |
| M479_RS01110 () | 55317..55757 | - | 441 | WP_002220918.1 | hypothetical protein | VF |
| M479_RS01115 () | 55754..57868 | - | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| M479_RS01120 () | 57855..58199 | - | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| M479_RS01125 () | 58196..58564 | - | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| M479_RS01130 () | 58561..58932 | - | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| M479_RS01135 () | 58919..59197 | - | 279 | WP_002212965.1 | Protein TyeA | VF |
| M479_RS01140 () | 59178..60059 | - | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| M479_RS01145 () | 60257..61576 | + | 1320 | WP_011901825.1 | putative ATP synthase YscN | VF |
| M479_RS01150 () | 61573..62037 | + | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| M479_RS01155 () | 62037..63404 | + | 1368 | WP_011901824.1 | hypothetical protein | VF |
| M479_RS01160 () | 63401..64324 | + | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| M479_RS01165 () | 64321..64974 | + | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| M479_RS01170 () | 64976..65242 | + | 267 | WP_002212945.1 | hypothetical protein | VF |
| M479_RS01175 () | 65239..66024 | + | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| M479_RS01180 () | 66024..67088 | + | 1065 | WP_011901823.1 | Yop proteins translocation protein U | VF |
| M479_RS01185 () | 67663..68058 | + | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| M479_RS01190 () | 68182..68997 | + | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| M479_RS01195 () | 69076..69174 | + | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| M479_RS01200 () | 69400..69813 | + | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|