MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 71523 bp
Accession: NZ_CP006761 Location: 1..71523 Organism: Yersinia pestis 1413 Replicon: plasmid pCD
Accession: NZ_CP006761 Location: 1..71523 Organism: Yersinia pestis 1413 Replicon: plasmid pCD
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M480_RS00745 () | 416..703 | - | 288 | WP_002212973.1 | hypothetical protein | VF |
| M480_RS00750 () | 745..1185 | - | 441 | WP_002220918.1 | hypothetical protein | VF |
| M480_RS00755 () | 1182..3296 | - | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| M480_RS00760 () | 3283..3627 | - | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| M480_RS00765 () | 3624..3992 | - | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| M480_RS00770 () | 3989..4360 | - | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| M480_RS00775 () | 4347..4625 | - | 279 | WP_002212965.1 | Protein TyeA | VF |
| M480_RS00780 () | 4606..5487 | - | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| M480_RS00785 () | 5685..7004 | + | 1320 | WP_011901825.1 | putative ATP synthase YscN | VF |
| M480_RS00790 () | 7001..7465 | + | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| M480_RS00795 () | 7465..8832 | + | 1368 | WP_011901824.1 | hypothetical protein | VF |
| M480_RS00800 () | 8829..9752 | + | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| M480_RS00805 () | 9749..10402 | + | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| M480_RS00810 () | 10404..10670 | + | 267 | WP_002212945.1 | hypothetical protein | VF |
| M480_RS00815 () | 10667..11452 | + | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| M480_RS00820 () | 11452..12516 | + | 1065 | WP_011901823.1 | Yop proteins translocation protein U | VF |
| M480_RS00825 () | 13091..13486 | + | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| M480_RS00830 () | 13610..14425 | + | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| M480_RS00835 () | 14504..14602 | + | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| M480_RS00840 () | 14828..15241 | + | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| M480_RS00845 () | 15247..17070 | + | 1824 | WP_002212923.1 | Yop proteins translocation protein C | VF |
| M480_RS00850 () | 17067..18326 | + | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| M480_RS00855 () | 18323..18523 | + | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| M480_RS00860 () | 18524..18787 | + | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| M480_RS00865 () | 18789..19136 | + | 348 | WP_011901822.1 | Putative Yop proteins translocation protein G | VF |
| M480_RS00870 () | 19133..19630 | + | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| M480_RS00875 () | 19631..19978 | + | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| M480_RS00880 () | 19985..20719 | + | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| M480_RS00885 () | 20719..21348 | + | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| M480_RS00890 () | 21294..21959 | + | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| M480_RS00895 () | 22184..22531 | + | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| M480_RS23790 () | 23079..23940 | + | 862 | Protein_32 | IS3 family transposase | - |
| M480_RS00915 () | 24064..25086 | + | 1023 | WP_000255944.1 | IS21 family transposase IS100kyp | Transposase |
| M480_RS23435 () | 25083..25864 | + | 782 | Protein_34 | IS21-like element IS100kyp family helper ATPase IstB | - |
| M480_RS00935 () | 25930..26067 | + | 138 | Protein_35 | transposase | - |
| M480_RS22095 () | 26086..26358 | + | 273 | Protein_36 | transposase | - |
| M480_RS00940 () | 26579..27985 | - | 1407 | WP_011901819.1 | Tyrosine-protein phosphatase YopH | VF |
| M480_RS00945 () | 28268..28501 | - | 234 | Protein_38 | transposase domain-containing protein | - |
| M480_RS00950 () | 28504..29082 | + | 579 | Protein_39 | IS3 family transposase ISYpe1 | Transposase |
| M480_RS00955 () | 29668..30534 | - | 867 | WP_002213287.1 | Effector protein YopJ | VF |
| M480_RS00960 () | 30930..33128 | - | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| M480_RS00965 () | 33146..33574 | - | 429 | WP_002233145.1 | hypothetical protein | VF |
| M480_RS23440 () | 33830..34142 | - | 313 | Protein_43 | IS3 family transposase ISKpn37 | Transposase |
| M480_RS22110 () | 34320..34559 | - | 240 | WP_002213291.1 | hypothetical protein | - |
| M480_RS00975 () | 35732..36610 | - | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| M480_RS00980 () | 36591..36665 | - | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| M480_RS00985 () | 36907..37161 | - | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| M480_RS00990 () | 37299..37547 | - | 249 | WP_002233137.1 | Phospholipase D | VF |
| M480_RS22120 () | 37673..37981 | + | 309 | Protein_49 | DDE-type integrase/transposase/recombinase | - |
| M480_RS23800 () | 37964..38371 | - | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| M480_RS01000 () | 38395..38712 | - | 318 | WP_002213008.1 | IS3 family transposase ISKpn37 | Transposase |
| M480_RS01005 () | 38884..39342 | - | 459 | WP_002213246.1 | hypothetical protein | - |
| M480_RS01010 () | 39411..39680 | + | 270 | WP_042469136.1 | transposase | - |
| M480_RS24485 () | 39778..39936 | - | 159 | Protein_54 | EamA family transporter | - |
| M480_RS22130 () | 40006..41309 | - | 1304 | Protein_55 | Adhesin YadA | VF |
| M480_RS01030 () | 41909..42259 | + | 351 | Protein_56 | IS3 family transposase IS1351 | Transposase |
| M480_RS01035 () | 42292..44607 | - | 2316 | WP_011901828.1 | Tn3 family transposase ISEc63 | Transposase |
| M480_RS01040 () | 44771..45322 | + | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| M480_RS01045 () | 45341..45805 | + | 465 | WP_002224338.1 | hypothetical protein | - |
| M480_RS01050 () | 45944..46273 | + | 330 | WP_002229829.1 | hypothetical protein | - |
| M480_RS01060 () | 46373..47472 | + | 1100 | WP_086016640.1 | IS3 family transposase ISYpe1 | Transposase |
| M480_RS01065 () | 47620..48045 | - | 426 | WP_002213267.1 | hypothetical protein | VF |
| M480_RS01070 () | 48422..48820 | - | 399 | Protein_63 | IS21 family transposase IS21 | Transposase |
| M480_RS01075 () | 48820..49992 | - | 1173 | WP_002220893.1 | IS21 family transposase IS21 | Transposase |
| M480_RS01080 () | 50095..50739 | + | 645 | Protein_65 | IS3 family transposase ISYen3 | Transposase |
| M480_RS01085 () | 50802..51194 | - | 393 | WP_002213403.1 | YopE regulator | VF |
| M480_RS01090 () | 51388..52047 | + | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| M480_RS01095 () | 52187..52486 | - | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| M480_RS01100 () | 52479..52721 | - | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| M480_RS23450 () | 52887..53179 | - | 293 | Protein_70 | IS6 family transposase ISEas1 | Transposase |
| M480_RS24490 () | 53267..53440 | + | 174 | WP_002213357.1 | hypothetical protein | - |
| M480_RS01105 () | 53895..54860 | - | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| M480_RS01110 () | 54857..56023 | - | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| M480_RS23810 () | 56783..57928 | - | 1146 | Protein_74 | IS3 family transposase | - |
| M480_RS01130 () | 58035..58664 | - | 630 | WP_002229770.1 | hypothetical protein | - |
| M480_RS23460 () | 58810..59103 | - | 294 | Protein_76 | IS3 family transposase | - |
| M480_RS01135 () | 59262..59810 | - | 549 | WP_002213007.1 | hypothetical protein | VF |
| M480_RS22170 () | 60310..61277 | + | 968 | Protein_78 | Cysteine protease YopT | VF |
| M480_RS01150 () | 61277..61675 | + | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| M480_RS22175 () | 62081..62362 | + | 282 | Protein_80 | DDE-type integrase/transposase/recombinase | - |
| M480_RS01160 () | 62380..62799 | + | 420 | WP_002222515.1 | hypothetical protein | - |
| M480_RS23815 () | 63327..63545 | - | 219 | Protein_82 | IS6 family transposase | - |
| M480_RS23820 () | 63548..63793 | + | 246 | WP_116442925.1 | transposase | - |
| M480_RS01165 () | 63675..63992 | + | 318 | Protein_84 | IS256 family transposase ISSod4 | Transposase |
| M480_RS01170 () | 64035..65264 | - | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| M480_RS01175 () | 65658..65867 | - | 210 | WP_002229781.1 | hypothetical protein | - |
| M480_RS23465 () | 65888..66525 | + | 638 | Protein_87 | IS6 family transposase | - |
| M480_RS01180 () | 66565..67774 | - | 1210 | Protein_88 | IS256 family transposase IS285 | Transposase |
| M480_RS01185 () | 68317..69237 | - | 921 | WP_002212987.1 | Protein YopD | VF |
| M480_RS01190 () | 69256..70461 | - | 1206 | WP_002212985.1 | Protein YopB | VF |
| M480_RS01195 () | 70439..70945 | - | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|