MGE detailed information
MGE type: Prophage MGE length: 59719 bp
Accession: NZ_CP006262 Location: 2418599..2478317 Organism: Escherichia coli O145:H28 str. RM13516 Replicon: chromosome
Accession: NZ_CP006262 Location: 2418599..2478317 Organism: Escherichia coli O145:H28 str. RM13516 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECRM13516_RS12395 () | 2414084..2414719 | + | 636 | WP_001240091.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| ECRM13516_RS12400 () | 2414976..2415626 | + | 651 | WP_001007773.1 | metal-binding protein ZinT | - |
| ECRM13516_RS12405 () | 2415969..2416499 | + | 531 | WP_001079066.1 | cytochrome b | - |
| ECRM13516_RS31410 () | 2417340..2417428 | + | 89 | Protein_2361 | YkgJ family cysteine cluster protein | - |
| ECRM13516_RS12415 () | 2417844..2418413 | - | 570 | WP_001570005.1 | T3SS effector caspase inhibitor NleF | - |
| ECRM13516_RS32260 () | 2418468..2419379 | - | 912 | Protein_2363 | hypothetical protein | VF |
| ECRM13516_RS29665 () | 2419543..2419674 | - | 132 | WP_095111390.1 | tail fiber assembly protein | - |
| ECRM13516_RS31415 () | 2419700..2419987 | - | 288 | Protein_2365 | hypothetical protein | VF |
| ECRM13516_RS12425 () | 2420021..2421001 | - | 981 | WP_000950813.1 | hypothetical protein | VF |
| ECRM13516_RS12430 () | 2421178..2421447 | - | 270 | WP_001371738.1 | phage tail fiber C-terminal domain-containing protein | - |
| ECRM13516_RS12435 () | 2421449..2422654 | - | 1206 | WP_025380433.1 | prophage tail fiber N-terminal domain-containing protein | - |
| ECRM13516_RS12440 () | 2422719..2423318 | - | 600 | WP_001585354.1 | Outer membrane protein X | VF |
| ECRM13516_RS12445 () | 2423385..2426861 | - | 3477 | WP_025380434.1 | host specificity protein J | - |
| ECRM13516_RS12450 () | 2427111..2427743 | - | 633 | WP_144319769.1 | tail assembly protein | - |
| ECRM13516_RS12455 () | 2427689..2428432 | - | 744 | WP_025380436.1 | C40 family peptidase | - |
| ECRM13516_RS12460 () | 2428443..2429141 | - | 699 | WP_025380437.1 | phage minor tail protein L | - |
| ECRM13516_RS12465 () | 2429141..2429470 | - | 330 | WP_000847304.1 | phage tail protein | - |
| ECRM13516_RS12470 () | 2429467..2432046 | - | 2580 | WP_025380301.1 | phage tail tape measure protein | - |
| ECRM13516_RS12475 () | 2432027..2432440 | - | 414 | WP_000533425.1 | phage tail assembly protein T | - |
| ECRM13516_RS12480 () | 2432467..2432898 | - | 432 | WP_000479105.1 | phage minor tail protein G | - |
| ECRM13516_RS12485 () | 2432912..2433664 | - | 753 | WP_000106789.1 | phage tail protein | - |
| ECRM13516_RS12490 () | 2433672..2434067 | - | 396 | WP_000683066.1 | phage minor tail U family protein | - |
| ECRM13516_RS12495 () | 2434064..2434597 | - | 534 | WP_025380299.1 | phage tail protein | - |
| ECRM13516_RS12500 () | 2434613..2434966 | - | 354 | WP_001204549.1 | tail attachment protein | - |
| ECRM13516_RS12505 () | 2434959..2435333 | - | 375 | WP_000201523.1 | hypothetical protein | - |
| ECRM13516_RS12510 () | 2435385..2436413 | - | 1029 | WP_000522615.1 | major capsid protein | - |
| ECRM13516_RS12515 () | 2436471..2436818 | - | 348 | WP_000256809.1 | head decoration protein | - |
| ECRM13516_RS12520 () | 2436855..2438360 | - | 1506 | WP_001253961.1 | S49 family peptidase | - |
| ECRM13516_RS12525 () | 2438350..2439942 | - | 1593 | WP_025380273.1 | phage portal protein | - |
| ECRM13516_RS12530 () | 2439939..2440145 | - | 207 | WP_000259002.1 | head-tail joining protein | - |
| ECRM13516_RS12535 () | 2440129..2442057 | - | 1929 | WP_012816790.1 | phage terminase large subunit family protein | - |
| ECRM13516_RS12540 () | 2442029..2442538 | - | 510 | WP_000235436.1 | terminase small subunit | - |
| ECRM13516_RS29670 () | 2442933..2443157 | + | 225 | WP_001300236.1 | YlcI/YnfO family protein | - |
| ECRM13516_RS12545 () | 2443239..2443553 | - | 315 | WP_001303878.1 | PerC family transcriptional regulator | - |
| ECRM13516_RS32265 () | 2444081..2444266 | - | 186 | WP_025380438.1 | Rz1 family lipoprotein | - |
| ECRM13516_RS12555 () | 2444488..2444601 | - | 114 | WP_000675931.1 | hypothetical protein | - |
| ECRM13516_RS12560 () | 2444823..2445356 | - | 534 | WP_000992146.1 | lysozyme | - |
| ECRM13516_RS12565 () | 2445407..2445751 | - | 345 | WP_000731241.1 | YdfR family protein | - |
| ECRM13516_RS12570 () | 2445756..2445971 | - | 216 | WP_000284518.1 | class II holin family protein | - |
| ECRM13516_RS12575 () | 2446124..2447974 | - | 1851 | WP_025380439.1 | SASA family carbohydrate esterase | - |
| ECRM13516_RS12580 () | 2448297..2448549 | - | 253 | Protein_2398 | DUF3927 family protein | - |
| ECRM13516_RS12585 () | 2448546..2448977 | - | 432 | WP_025380440.1 | tellurite resistance TerB family protein | - |
| ECRM13516_RS12600 () | 2449428..2450141 | - | 714 | WP_144319765.1 | helix-turn-helix domain-containing protein | - |
| ECRM13516_RS32270 () | 2450279..2450476 | - | 198 | WP_000917764.1 | hypothetical protein | - |
| ECRM13516_RS12610 () | 2450701..2451255 | - | 555 | WP_000640035.1 | DUF1133 family protein | - |
| ECRM13516_RS12615 () | 2451264..2451623 | - | 360 | WP_025380442.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ECRM13516_RS12620 () | 2451636..2452685 | - | 1050 | WP_001265229.1 | DUF968 domain-containing protein | - |
| ECRM13516_RS12625 () | 2452687..2452959 | - | 273 | WP_000191872.1 | hypothetical protein | - |
| ECRM13516_RS12630 () | 2453081..2453425 | - | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| ECRM13516_RS12635 () | 2453545..2453700 | - | 156 | WP_000813258.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 2453712..2453770 | + | 59 | - | - | Antitoxin Detail |
| ECRM13516_RS12640 () | 2453991..2454548 | - | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| ECRM13516_RS12645 () | 2454550..2454768 | - | 219 | WP_000683609.1 | DUF4014 family protein | - |
| ECRM13516_RS12650 () | 2454896..2455207 | - | 312 | WP_000034815.1 | hypothetical protein | - |
| ECRM13516_RS12655 () | 2455200..2455427 | - | 228 | WP_000699809.1 | hypothetical protein | - |
| ECRM13516_RS12660 () | 2455424..2455705 | - | 282 | WP_042353845.1 | DNA-binding protein | - |
| ECRM13516_RS32275 () | 2455738..2456454 | - | 717 | WP_000450617.1 | DUF1627 domain-containing protein | - |
| ECRM13516_RS32280 () | 2456476..2457222 | - | 747 | WP_025380443.1 | ATP-binding protein | - |
| ECRM13516_RS12675 () | 2457229..2458335 | - | 1107 | WP_025380444.1 | hypothetical protein | - |
| ECRM13516_RS12680 () | 2458407..2458832 | - | 426 | WP_000693858.1 | hypothetical protein | - |
| ECRM13516_RS12685 () | 2458816..2459058 | - | 243 | WP_000747948.1 | hypothetical protein | - |
| ECRM13516_RS32285 () | 2459450..2459788 | + | 339 | WP_001416688.1 | peptidase S24 | - |
| ECRM13516_RS12695 () | 2460081..2460233 | + | 153 | WP_001345283.1 | DUF1391 family protein | - |
| ECRM13516_RS12700 () | 2460245..2460883 | + | 639 | WP_000394546.1 | hypothetical protein | - |
| ECRM13516_RS12705 () | 2460884..2461093 | - | 210 | WP_001133037.1 | hypothetical protein | - |
| ECRM13516_RS12715 () | 2461658..2461846 | + | 189 | WP_000449175.1 | cell division inhibitor | - |
| ECRM13516_RS12720 () | 2461843..2462031 | + | 189 | WP_000199475.1 | DUF1482 family protein | - |
| ECRM13516_RS12725 () | 2462124..2464631 | + | 2508 | WP_025380445.1 | exonuclease | - |
| ECRM13516_RS12730 () | 2464690..2464893 | + | 204 | WP_000096346.1 | DUF4224 domain-containing protein | - |
| ECRM13516_RS12735 () | 2464893..2465918 | + | 1026 | WP_000533625.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| ECRM13516_RS12745 () | 2466154..2466951 | + | 798 | WP_001302302.1 | DgsA anti-repressor MtfA | - |
| ECRM13516_RS12755 () | 2467289..2468551 | + | 1263 | WP_025380446.1 | Prophage integrase IntA ; Integrase | Integrase |
| ECRM13516_RS32955 () | 2468778..2469077 | - | 300 | WP_180192641.1 | hypothetical protein | - |
| ECRM13516_RS12760 () | 2469850..2470733 | - | 884 | Protein_2430 | hypothetical protein ; Integrase | Integrase |
| ECRM13516_RS12765 () | 2471543..2471815 | - | 273 | WP_001242259.1 | HigA family addiction module antidote protein | - |
| ECRM13516_RS12770 () | 2471966..2472220 | - | 255 | WP_000983666.1 | helix-turn-helix domain-containing protein | - |
| ECRM13516_RS12775 () | 2472217..2472678 | - | 462 | WP_000235844.1 | hypothetical protein | - |
| ECRM13516_RS12780 () | 2473014..2474075 | - | 1062 | WP_022581241.1 | hypothetical protein | VF |
| ECRM13516_RS12785 () | 2474039..2475898 | - | 1860 | WP_025380447.1 | hypothetical protein | VF |
| ECRM13516_RS12790 () | 2476203..2478317 | + | 2115 | WP_000075767.1 | Actin cross-linking toxin VgrG1 | VF |
| ECRM13516_RS12795 () | 2478322..2478741 | + | 420 | WP_000727981.1 | hypothetical protein | - |
| ECRM13516_RS12800 () | 2478713..2479981 | + | 1269 | WP_001284344.1 | hypothetical protein | - |
| ECRM13516_RS12805 () | 2480060..2480341 | + | 282 | WP_001202999.1 | PAAR domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|