MGE detailed information
MGE type: Prophage MGE length: 60688 bp
Accession: NZ_CP006262 Location: 1914045..1974732 Organism: Escherichia coli O145:H28 str. RM13516 Replicon: chromosome
Accession: NZ_CP006262 Location: 1914045..1974732 Organism: Escherichia coli O145:H28 str. RM13516 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECRM13516_RS09640 () | 1910558..1911304 | + | 747 | WP_000636575.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| ECRM13516_RS09645 () | 1911393..1912079 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| ECRM13516_RS09650 () | 1912256..1912459 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| ECRM13516_RS09655 () | 1912495..1913955 | - | 1461 | WP_025380385.1 | mannitol dehydrogenase family protein | - |
| ECRM13516_RS09660 () | 1914045..1915328 | - | 1284 | Protein_1833 | MHS family MFS transporter YdfJ | - |
| ECRM13516_RS09665 () | 1915460..1915702 | + | 243 | WP_001120551.1 | DinI-like family protein | - |
| ECRM13516_RS09670 () | 1916073..1917086 | - | 1014 | WP_122993102.1 | hypothetical protein | VF |
| ECRM13516_RS09675 () | 1917489..1917758 | - | 270 | WP_001023381.1 | phage tail fiber C-terminal domain-containing protein | - |
| ECRM13516_RS09680 () | 1917760..1919073 | - | 1314 | WP_025380386.1 | ISNCY family transposase KIS | Transposase |
| ECRM13516_RS09685 () | 1919138..1919737 | - | 600 | WP_025380387.1 | Outer membrane protein X | VF |
| ECRM13516_RS09690 () | 1919804..1923283 | - | 3480 | WP_025380388.1 | host specificity protein J | - |
| ECRM13516_RS09695 () | 1923530..1924162 | - | 633 | WP_072141513.1 | tail assembly protein | - |
| ECRM13516_RS09700 () | 1924108..1924851 | - | 744 | WP_025380389.1 | C40 family peptidase | - |
| ECRM13516_RS09705 () | 1924857..1925555 | - | 699 | WP_001448322.1 | phage minor tail protein L | - |
| ECRM13516_RS09710 () | 1925555..1925884 | - | 330 | WP_000847298.1 | phage tail protein | - |
| ECRM13516_RS09715 () | 1925881..1928493 | - | 2613 | WP_000081788.1 | phage tail tape measure protein | - |
| ECRM13516_RS09720 () | 1928474..1928887 | - | 414 | WP_000533440.1 | phage tail assembly protein T | - |
| ECRM13516_RS09725 () | 1928914..1929336 | - | 423 | WP_000479051.1 | phage minor tail protein G | - |
| ECRM13516_RS09730 () | 1929350..1930102 | - | 753 | WP_000235101.1 | Ig domain-containing protein | - |
| ECRM13516_RS09735 () | 1930110..1930505 | - | 396 | WP_000683137.1 | phage minor tail U family protein | - |
| ECRM13516_RS09740 () | 1930502..1931080 | - | 579 | WP_000975099.1 | phage tail protein | - |
| ECRM13516_RS09745 () | 1931092..1931445 | - | 354 | WP_000752994.1 | head-tail joining protein | - |
| ECRM13516_RS09750 () | 1931457..1931852 | - | 396 | WP_000158897.1 | DNA-packaging protein FI | - |
| ECRM13516_RS09755 () | 1931894..1932919 | - | 1026 | WP_000063258.1 | major capsid protein | - |
| ECRM13516_RS09760 () | 1932975..1933307 | - | 333 | WP_001295978.1 | head decoration protein | - |
| ECRM13516_RS09765 () | 1933317..1934636 | - | 1320 | WP_000123292.1 | S49 family peptidase | - |
| ECRM13516_RS09770 () | 1934617..1936218 | - | 1602 | WP_025380390.1 | phage portal protein | - |
| ECRM13516_RS09775 () | 1936215..1936421 | - | 207 | WP_000198153.1 | gpW family protein | - |
| ECRM13516_RS09780 () | 1936418..1938343 | - | 1926 | WP_001027330.1 | phage terminase large subunit family protein | - |
| ECRM13516_RS09785 () | 1938318..1938863 | - | 546 | WP_000453587.1 | DNA-packaging protein | - |
| ECRM13516_RS29450 () | 1939259..1939483 | + | 225 | WP_001300236.1 | YlcI/YnfO family protein | - |
| ECRM13516_RS09795 () | 1939565..1939879 | - | 315 | WP_001303878.1 | PerC family transcriptional regulator | - |
| ECRM13516_RS32205 () | 1940407..1940592 | - | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| ECRM13516_RS32210 () | 1940820..1940951 | - | 132 | WP_001280929.1 | hypothetical protein | - |
| ECRM13516_RS29465 () | 1940964..1941146 | - | 183 | WP_001303555.1 | hypothetical protein | - |
| ECRM13516_RS09810 () | 1941302..1941835 | - | 534 | WP_000992157.1 | lysozyme | - |
| ECRM13516_RS09815 () | 1941886..1942230 | - | 345 | WP_000731192.1 | YdfR family protein | - |
| ECRM13516_RS09820 () | 1942235..1942450 | - | 216 | WP_000284518.1 | class II holin family protein | - |
| ECRM13516_RS09825 () | 1942600..1944453 | - | 1854 | WP_025380391.1 | SASA family carbohydrate esterase | - |
| ECRM13516_RS09835 () | 1945097..1946155 | - | 1059 | WP_000483509.1 | site-specific DNA-methyltransferase | - |
| ECRM13516_RS32215 () | 1946307..1946504 | - | 198 | WP_032324269.1 | TrmB family transcriptional regulator | - |
| ECRM13516_RS09845 () | 1946717..1947406 | - | 690 | WP_001064906.1 | antiterminator | - |
| ECRM13516_RS09850 () | 1947403..1947762 | - | 360 | WP_024221875.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ECRM13516_RS09855 () | 1947775..1948824 | - | 1050 | WP_001265167.1 | DUF968 domain-containing protein | - |
| ECRM13516_RS31350 () | 1948826..1949104 | - | 279 | WP_072128871.1 | hypothetical protein | - |
| ECRM13516_RS09865 () | 1949272..1949427 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - () | 1949439..1949497 | + | 59 | - | - | Antitoxin Detail |
| ECRM13516_RS31355 () | 1949674..1949778 | - | 105 | WP_001278450.1 | hypothetical protein | - |
| ECRM13516_RS09870 () | 1949894..1950607 | - | 714 | WP_000555106.1 | DUF551 domain-containing protein | - |
| ECRM13516_RS09875 () | 1950808..1951020 | - | 213 | WP_000063625.1 | hypothetical protein | - |
| ECRM13516_RS09880 () | 1951069..1951425 | - | 357 | WP_000403779.1 | hypothetical protein | - |
| ECRM13516_RS31360 () | 1951403..1952121 | - | 719 | Protein_1879 | ead/Ea22-like family protein | - |
| ECRM13516_RS09890 () | 1952118..1952414 | - | 297 | WP_001266130.1 | DUF4406 domain-containing protein | - |
| ECRM13516_RS09895 () | 1952411..1952803 | - | 393 | WP_022582018.1 | DUF977 family protein | - |
| ECRM13516_RS09900 () | 1952819..1953589 | - | 771 | WP_000450861.1 | DUF1627 domain-containing protein | - |
| ECRM13516_RS09905 () | 1953619..1954359 | - | 741 | WP_000790459.1 | ATP-binding protein | - |
| ECRM13516_RS09910 () | 1954366..1955334 | - | 969 | WP_000095674.1 | helix-turn-helix domain-containing protein | - |
| ECRM13516_RS09915 () | 1955357..1955782 | - | 426 | WP_000693888.1 | Rha family transcriptional regulator | - |
| ECRM13516_RS09920 () | 1955766..1956047 | - | 282 | WP_000391950.1 | helix-turn-helix domain-containing protein | - |
| ECRM13516_RS09925 () | 1956148..1956567 | + | 420 | WP_000362153.1 | hypothetical protein | - |
| ECRM13516_RS09930 () | 1956833..1956985 | + | 153 | WP_000379563.1 | DUF1391 family protein | - |
| ECRM13516_RS09935 () | 1956997..1957635 | + | 639 | WP_000394546.1 | hypothetical protein | - |
| ECRM13516_RS09940 () | 1957636..1957845 | - | 210 | WP_001133037.1 | hypothetical protein | - |
| ECRM13516_RS09950 () | 1958410..1958598 | + | 189 | WP_000449175.1 | cell division inhibitor | - |
| ECRM13516_RS09955 () | 1958595..1958783 | + | 189 | WP_000199475.1 | DUF1482 family protein | - |
| ECRM13516_RS09960 () | 1958876..1961338 | + | 2463 | WP_000102128.1 | exonuclease | - |
| ECRM13516_RS09965 () | 1961411..1961662 | + | 252 | WP_000005551.1 | excisionase family protein | - |
| ECRM13516_RS09970 () | 1961682..1962977 | + | 1296 | WP_001206148.1 | Putative defective protein IntQ ; Integrase | Integrase |
| ECRM13516_RS31370 () | 1962997..1963107 | - | 111 | WP_072095801.1 | transporter | - |
| ECRM13516_RS09975 () | 1963165..1964184 | - | 1020 | WP_025380392.1 | Zn-dependent oxidoreductase | - |
| ECRM13516_RS09980 () | 1964196..1965410 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| ECRM13516_RS09985 () | 1965616..1965942 | - | 327 | Protein_1899 | YnfA family protein | - |
| ECRM13516_RS09990 () | 1966077..1966418 | + | 342 | WP_000705197.1 | DUF1283 family protein | - |
| ECRM13516_RS09995 () | 1966453..1967013 | + | 561 | WP_001138582.1 | spermidine N1-acetyltransferase | - |
| ECRM13516_RS10000 () | 1967016..1967726 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| ECRM13516_RS10005 () | 1967834..1968139 | + | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| ECRM13516_RS10010 () | 1968338..1970764 | + | 2427 | WP_000041657.1 | dimethyl sulfoxide reductase subunit A | - |
| ECRM13516_RS10015 () | 1970825..1973248 | + | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| ECRM13516_RS10020 () | 1973259..1973876 | + | 618 | WP_000213025.1 | dimethylsulfoxide reductase subunit B | - |
| ECRM13516_RS10025 () | 1973878..1974732 | + | 855 | WP_025380393.1 | dimethyl sulfoxide reductase anchor subunit | - |
| ECRM13516_RS10030 () | 1974775..1975389 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| ECRM13516_RS10035 () | 1975548..1976840 | + | 1293 | WP_071792357.1 | voltage-gated ClC-type chloride channel ClcB | - |
| ECRM13516_RS10040 () | 1976793..1977488 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| ECRM13516_RS10045 () | 1977613..1978833 | - | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|