MGE detailed information
MGE type: Conjugative plasmid MGE length: 75467 bp
Accession: NZ_AP025678 Location: 1..75467 Organism: Escherichia coli strain Rb-23 Replicon: plasmid pRb23_1
Accession: NZ_AP025678 Location: 1..75467 Organism: Escherichia coli strain Rb-23 Replicon: plasmid pRb23_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MWM20_RS23240 (TRECRb23_44060) | 1..1032 | + | 1032 | WP_000907880.1 | plasmid replication initiator RepA | - |
| MWM20_RS23245 (TRECRb23_44070) | 1940..2224 | + | 285 | WP_001178089.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| MWM20_RS23250 (TRECRb23_44080) | 2224..2499 | + | 276 | WP_000421257.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| MWM20_RS23255 (TRECRb23_44090) | 2605..2808 | + | 204 | Protein_3 | hypothetical protein | - |
| MWM20_RS23260 (TRECRb23_44100) | 3077..3343 | - | 267 | WP_000627831.1 | hypothetical protein | - |
| MWM20_RS23265 (TRECRb23_44110) | 3581..4183 | - | 603 | WP_000517694.1 | ProQ/FINO family protein | - |
| MWM20_RS23270 (TRECRb23_44120) | 4537..5883 | + | 1347 | WP_021537814.1 | protein YagA | - |
| MWM20_RS23275 (TRECRb23_44130) | 6402..6704 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| MWM20_RS23280 (TRECRb23_44140) | 6701..7327 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| MWM20_RS23285 (TRECRb23_44150) | 7523..8794 | - | 1272 | WP_000457510.1 | Y-family DNA polymerase | - |
| MWM20_RS23290 (TRECRb23_44160) | 8794..9231 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| MWM20_RS23295 (TRECRb23_44170) | 9228..9476 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| MWM20_RS23300 (TRECRb23_44180) | 9895..10797 | + | 903 | WP_077635325.1 | DUF1281 domain-containing protein | - |
| MWM20_RS23305 | 10794..11105 | + | 312 | WP_012615291.1 | hypothetical protein | - |
| MWM20_RS23310 (TRECRb23_44190) | 11181..11864 | + | 684 | WP_000086132.1 | DNA methylase | - |
| MWM20_RS23315 (TRECRb23_44200) | 11865..12086 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| MWM20_RS23320 (TRECRb23_44210) | 12016..12534 | + | 519 | WP_223163515.1 | DUF1380 family protein | - |
| MWM20_RS23325 (TRECRb23_44220) | 12579..13349 | + | 771 | WP_001441864.1 | hypothetical protein | - |
| MWM20_RS23330 (TRECRb23_44240) | 13764..14264 | + | 501 | WP_000117631.1 | antirestriction protein ArdA | - |
| MWM20_RS23335 (TRECRb23_44260) | 14996..15430 | + | 435 | WP_000218862.1 | hypothetical protein | - |
| MWM20_RS23340 (TRECRb23_44270) | 15523..15789 | + | 267 | WP_001247860.1 | hypothetical protein | - |
| MWM20_RS23345 (TRECRb23_44280) | 15966..16355 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| MWM20_RS23350 (TRECRb23_44290) | 16352..17230 | + | 879 | WP_052991866.1 | Recombination-promoting nuclease RpnA | VF |
| MWM20_RS23355 (TRECRb23_44300) | 17289..17495 | + | 207 | WP_012680992.1 | hypothetical protein | VF |
| MWM20_RS23360 (TRECRb23_44310) | 17526..17777 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| MWM20_RS23365 (TRECRb23_44320) | 18357..19205 | + | 849 | WP_001077017.1 | DUF4942 domain-containing protein | - |
| MWM20_RS23370 (TRECRb23_44330) | 19291..19626 | - | 336 | WP_000157091.1 | hypothetical protein | - |
| MWM20_RS23375 (TRECRb23_44340) | 19859..20191 | + | 333 | WP_001291057.1 | plasmid mobilization protein MobA | - |
| MWM20_RS23380 (TRECRb23_44350) | 20203..22923 | + | 2721 | WP_000991407.1 | Protein TraI | Relaxase |
| MWM20_RS23385 (TRECRb23_44360) | 23144..25444 | - | 2301 | WP_000077653.1 | F-type conjugative transfer protein TrbC | - |
| MWM20_RS23390 (TRECRb23_44370) | 25425..26549 | - | 1125 | WP_000152384.1 | DsbC family protein | - |
| MWM20_RS23395 (TRECRb23_44380) | 26546..27862 | - | 1317 | WP_044192348.1 | IncI1-type conjugal transfer protein TrbA | - |
| MWM20_RS23400 | 28200..28346 | + | 147 | WP_001346191.1 | hypothetical protein | - |
| MWM20_RS24405 | 28399..28494 | + | 96 | WP_001363141.1 | DinQ-like type I toxin DqlB | - |
| MWM20_RS24410 | 29083..29178 | + | 96 | WP_001363141.1 | DinQ-like type I toxin DqlB | - |
| MWM20_RS23410 (TRECRb23_44400) | 29241..29417 | - | 177 | WP_001054907.1 | hypothetical protein | - |
| MWM20_RS23415 (TRECRb23_44410) | 29568..30035 | - | 468 | WP_000598962.1 | thermonuclease family protein | - |
| MWM20_RS23420 (TRECRb23_44420) | 30195..30818 | + | 624 | WP_001155250.1 | helix-turn-helix domain-containing protein | - |
| MWM20_RS23425 (TRECRb23_44440) | 31016..31231 | - | 216 | WP_000266543.1 | hypothetical protein | - |
| MWM20_RS23430 (TRECRb23_44450) | 31235..31590 | - | 356 | Protein_39 | hypothetical protein | - |
| MWM20_RS23435 (TRECRb23_44460) | 31881..32123 | - | 243 | WP_000650923.1 | hypothetical protein | - |
| MWM20_RS23440 (TRECRb23_44470) | 32453..32605 | + | 153 | WP_001302699.1 | Hok/Gef family protein | - |
| MWM20_RS23445 (TRECRb23_44480) | 32743..34329 | - | 1587 | WP_113049452.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| MWM20_RS23450 (TRECRb23_44490) | 34603..35256 | - | 654 | WP_001402874.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| MWM20_RS23455 (TRECRb23_44500) | 35344..37509 | - | 2166 | WP_001441855.1 | DotA/TraY family protein | - |
| MWM20_RS23460 (TRECRb23_44510) | 37584..38153 | - | 570 | WP_000650752.1 | conjugal transfer protein TraX | - |
| MWM20_RS23465 (TRECRb23_44520) | 38150..39355 | - | 1206 | WP_001189548.1 | conjugal transfer protein TraW | - |
| MWM20_RS23470 (TRECRb23_44530) | 39313..39933 | - | 621 | WP_000286854.1 | hypothetical protein | - |
| MWM20_RS23475 (TRECRb23_44540) | 39933..42977 | - | 3045 | WP_001024766.1 | conjugal transfer protein | - |
| MWM20_RS23480 (TRECRb23_44550) | 43272..44090 | - | 819 | WP_000753550.1 | hypothetical protein | - |
| MWM20_RS24415 (TRECRb23_44560) | 44005..44256 | - | 252 | WP_001277573.1 | hypothetical protein | - |
| MWM20_RS23490 (TRECRb23_44570) | 44313..44711 | - | 399 | WP_000088813.1 | hypothetical protein | - |
| MWM20_RS23495 (TRECRb23_44580) | 44758..45288 | - | 531 | WP_000987021.1 | conjugal transfer protein TraQ | - |
| MWM20_RS23500 (TRECRb23_44590) | 45285..45998 | - | 714 | WP_000787003.1 | conjugal transfer protein TraP | - |
| MWM20_RS23505 (TRECRb23_44600) | 45995..47332 | - | 1338 | WP_001272018.1 | conjugal transfer protein TraO | - |
| MWM20_RS23510 (TRECRb23_44610) | 47336..48310 | - | 975 | WP_000547385.1 | hypothetical protein | VF |
| MWM20_RS23515 (TRECRb23_44620) | 48321..49016 | - | 696 | WP_001287545.1 | DotI/IcmL family type IV secretion protein | - |
| MWM20_RS23520 (TRECRb23_44630) | 49028..49378 | - | 351 | WP_001056367.1 | hypothetical protein | - |
| MWM20_RS23525 (TRECRb23_44640) | 49395..53456 | - | 4062 | WP_001441856.1 | DUF5710 domain-containing protein | - |
| MWM20_RS23530 (TRECRb23_44650) | 53520..53810 | - | 291 | WP_000817801.1 | IcmT/TraK family protein | - |
| MWM20_RS23535 (TRECRb23_44660) | 53807..54955 | - | 1149 | WP_000775210.1 | putative protein YggR | VF |
| MWM20_RS23540 (TRECRb23_44670) | 54939..55775 | - | 837 | WP_000745049.1 | hypothetical protein | VF |
| MWM20_RS23545 (TRECRb23_44680) | 55772..56230 | - | 459 | WP_001170111.1 | DotD/TraH family lipoprotein | - |
| MWM20_RS23550 (TRECRb23_44690) | 56334..57536 | - | 1203 | WP_000979993.1 | conjugal transfer protein TraF | - |
| MWM20_RS23555 (TRECRb23_44700) | 57638..58459 | - | 822 | WP_000845373.1 | hypothetical protein | - |
| MWM20_RS23560 | 58624..58818 | - | 195 | Protein_65 | integrase | - |
| MWM20_RS23565 (TRECRb23_44710) | 58932..60293 | - | 1362 | WP_001168171.1 | hypothetical protein | VF |
| MWM20_RS23570 (TRECRb23_44720) | 60311..60937 | - | 627 | WP_000939245.1 | prepilin peptidase | - |
| MWM20_RS23575 (TRECRb23_44730) | 60953..61438 | - | 486 | WP_001080767.1 | hypothetical protein | VF |
| MWM20_RS23580 (TRECRb23_44740) | 61483..62019 | - | 537 | WP_000111521.1 | hypothetical protein | VF |
| MWM20_RS23585 (TRECRb23_44750) | 62081..63175 | - | 1095 | WP_000697154.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| MWM20_RS23590 (TRECRb23_44760) | 63177..64685 | - | 1509 | WP_000880806.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| MWM20_RS23595 (TRECRb23_44770) | 64789..65247 | - | 459 | WP_000095886.1 | hypothetical protein | VF |
| MWM20_RS23600 (TRECRb23_44780) | 65237..66532 | - | 1296 | WP_113049451.1 | type 4b pilus protein PilO2 | - |
| MWM20_RS23605 (TRECRb23_44790) | 66553..68172 | - | 1620 | WP_001035565.1 | Outer membrane lipoprotein BfpB | VF |
| MWM20_RS23610 (TRECRb23_44800) | 68204..68641 | - | 438 | WP_000539951.1 | hypothetical protein | VF |
| MWM20_RS23615 | 68645..69715 | - | 1071 | WP_001441857.1 | hypothetical protein | VF |
| MWM20_RS23620 (TRECRb23_44820) | 69956..70276 | - | 321 | WP_001447108.1 | hypothetical protein | - |
| MWM20_RS23625 (TRECRb23_44830) | 70392..70634 | - | 243 | WP_001271734.1 | PilI type IV pilus biogenesis protein | - |
| MWM20_RS23630 (TRECRb23_44840) | 70715..72409 | - | 1695 | WP_000482665.1 | flotillin family protein | - |
| MWM20_RS23635 (TRECRb23_44850) | 72436..73056 | - | 621 | WP_000176497.1 | DUF1449 family protein | - |
| MWM20_RS23640 (TRECRb23_44860) | 73323..73985 | - | 663 | WP_000154142.1 | hypothetical protein | - |
| MWM20_RS23645 | 74126..74767 | - | 642 | WP_000335849.1 | transcription termination/antitermination NusG family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|