MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 125776 bp
Accession: NZ_AP024587 Location: 1..125776 Organism: Citrobacter amalonaticus strain JCM 1661 Replicon: plasmid pCIAM-2
Accession: NZ_AP024587 Location: 1..125776 Organism: Citrobacter amalonaticus strain JCM 1661 Replicon: plasmid pCIAM-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KI228_RS23280 (CIAM_45480) | 1..1014 | + | 1014 | WP_141227212.1 | plasmid replication initiator RepA | - |
| KI228_RS23285 (CIAM_45490) | 1929..3413 | - | 1485 | Protein_1 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| KI228_RS23290 (CIAM_45500) | 3441..3797 | + | 357 | Protein_2 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| KI228_RS24415 | 4881..5171 | + | 291 | WP_227641047.1 | CPBP family intramembrane metalloprotease | - |
| KI228_RS23300 (CIAM_45530) | 5174..6427 | + | 1254 | WP_001567323.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| KI228_RS23305 (CIAM_45540) | 6427..8604 | + | 2178 | WP_001567324.1 | peptidase domain-containing ABC transporter | - |
| KI228_RS23310 (CIAM_45550) | 8646..9416 | - | 771 | WP_141227213.1 | TraX family protein | - |
| KI228_RS23315 (CIAM_45560) | 9843..10457 | - | 615 | WP_224267619.1 | hypothetical protein | - |
| KI228_RS23320 (CIAM_45570) | 10450..10944 | - | 495 | WP_141227214.1 | thermonuclease family protein | - |
| KI228_RS23325 (CIAM_45580) | 11222..12385 | + | 1164 | WP_141227215.1 | HNH endonuclease signature motif containing protein | - |
| KI228_RS23330 (CIAM_45590) | 12700..13653 | - | 954 | WP_141227216.1 | hypothetical protein | - |
| KI228_RS23335 (CIAM_45600) | 13810..14391 | - | 582 | WP_224267618.1 | hypothetical protein | - |
| KI228_RS23340 (CIAM_45610) | 14678..14866 | + | 189 | WP_121572309.1 | hypothetical protein | - |
| KI228_RS23345 (CIAM_45620) | 15436..16554 | - | 1119 | WP_121572308.1 | NADH:flavin oxidoreductase/NADH oxidase | - |
| KI228_RS23350 (CIAM_45630) | 16668..17288 | - | 621 | WP_121572307.1 | DUF1349 domain-containing protein | - |
| KI228_RS23355 (CIAM_45640) | 17409..18584 | - | 1176 | WP_224267617.1 | MFS transporter | - |
| KI228_RS23360 (CIAM_45650) | 18692..19012 | - | 321 | Protein_16 | excinuclease ABC subunit A | - |
| KI228_RS23365 (CIAM_45660) | 19177..20376 | - | 1200 | WP_224267616.1 | MFS transporter | - |
| KI228_RS23370 (CIAM_45670) | 20429..21187 | - | 759 | WP_121572306.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| KI228_RS23375 (CIAM_45680) | 21422..22477 | + | 1056 | WP_141227218.1 | IS630 family transposase ISPlu8 | Transposase |
| KI228_RS23380 (CIAM_45690) | 22552..24984 | + | 2433 | WP_212807623.1 | molybdopterin-dependent oxidoreductase | - |
| KI228_RS23385 (CIAM_45700) | 24998..25624 | + | 627 | WP_121572303.1 | dimethylsulfoxide reductase subunit B | - |
| KI228_RS23390 (CIAM_45710) | 25617..26390 | + | 774 | WP_121572302.1 | dimethyl sulfoxide reductase anchor subunit | - |
| KI228_RS23395 (CIAM_45720) | 26427..27023 | + | 597 | WP_121572301.1 | molecular chaperone | - |
| KI228_RS23400 | 27053..27556 | + | 504 | WP_224267622.1 | ferredoxin-type protein NapF | - |
| KI228_RS23405 (CIAM_45730) | 27865..28014 | - | 150 | WP_161556284.1 | IS3 family transposase ISSod2 | Transposase |
| KI228_RS23410 (CIAM_45740) | 28281..28556 | + | 276 | WP_121572299.1 | formaldehyde-responsive transcriptional repressor FrmR | - |
| KI228_RS23415 (CIAM_45750) | 28591..29700 | + | 1110 | WP_121572298.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| KI228_RS23420 (CIAM_45760) | 29742..30140 | + | 399 | WP_008813494.1 | VOC family protein | - |
| KI228_RS23425 (CIAM_45770) | 30206..31042 | + | 837 | WP_047732446.1 | S-formylglutathione hydrolase | - |
| KI228_RS23430 (CIAM_45780) | 31070..31705 | - | 636 | WP_047732266.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| KI228_RS24420 | 31873..32160 | + | 288 | Protein_31 | DUF4158 domain-containing protein | - |
| KI228_RS23435 (CIAM_45790) | 32204..32941 | + | 738 | Protein_32 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| KI228_RS23440 (CIAM_45800) | 33045..34481 | - | 1437 | WP_121572296.1 | aldehyde dehydrogenase family protein | - |
| KI228_RS24425 | 35377..35487 | + | 111 | Protein_34 | DUF5431 family protein | - |
| KI228_RS23445 | 35435..35557 | + | 123 | WP_223825188.1 | Hok/Gef family protein | - |
| KI228_RS23450 (CIAM_45810) | 35810..36067 | - | 258 | WP_077258044.1 | DUF2767 family protein | - |
| KI228_RS23455 (CIAM_45820) | 36779..38821 | + | 2043 | WP_121572294.1 | hypothetical protein | - |
| KI228_RS23460 | 39079..39906 | - | 828 | WP_212807625.1 | hypothetical protein | - |
| KI228_RS23465 | 40034..40591 | - | 558 | WP_224267615.1 | transposase zinc-binding domain-containing protein | - |
| KI228_RS23470 (CIAM_45860) | 40653..40975 | + | 323 | Protein_40 | IS3 family transposase IS911 | Transposase |
| KI228_RS23475 (CIAM_45870) | 41006..41287 | + | 282 | WP_201506619.1 | IS91 family transposase ISVsa9 | Transposase |
| KI228_RS24430 | 41426..41500 | - | 75 | Protein_42 | hypothetical protein | - |
| KI228_RS23485 (CIAM_45880) | 41741..43552 | + | 1812 | WP_047732316.1 | beta-glucoside-specific PTS transporter subunit IIABC | - |
| KI228_RS23490 (CIAM_45890) | 43552..45015 | + | 1464 | WP_047732321.1 | family 1 glycosylhydrolase | - |
| KI228_RS23495 (CIAM_45900) | 45037..45873 | + | 837 | WP_121572293.1 | PRD domain-containing protein | - |
| KI228_RS23500 (CIAM_45910) | 46034..46255 | + | 222 | Protein_46 | transposase | - |
| KI228_RS23505 (CIAM_45930) | 46713..47459 | - | 747 | Protein_47 | IS21 family transposase ISAs29 | Transposase |
| KI228_RS23510 (CIAM_45940) | 47473..48975 | - | 1503 | WP_141227221.1 | IS21 family transposase ISAs29 | Transposase |
| KI228_RS23515 (CIAM_45950) | 49185..49355 | + | 171 | WP_224267614.1 | hypothetical protein | - |
| KI228_RS23520 (CIAM_45960) | 49464..50000 | + | 537 | WP_121572291.1 | hypothetical protein | - |
| KI228_RS23525 (CIAM_45970) | 50017..50610 | - | 594 | WP_141227222.1 | hypothetical protein | - |
| KI228_RS23530 (CIAM_45980) | 50626..51579 | - | 954 | WP_161556283.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| KI228_RS23535 (CIAM_45990) | 52066..53244 | - | 1179 | WP_121572350.1 | MFS transporter | - |
| KI228_RS23540 (CIAM_46000) | 53665..54423 | + | 759 | WP_047732337.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| KI228_RS23545 (CIAM_46010) | 54457..55638 | + | 1182 | WP_141227223.1 | MFS transporter | - |
| KI228_RS23550 (CIAM_46020) | 55720..56349 | + | 630 | WP_063136851.1 | DUF1349 domain-containing protein | - |
| KI228_RS23555 | 57140..58210 | + | 1071 | WP_141227224.1 | hypothetical protein | - |
| KI228_RS23560 (CIAM_46040) | 58356..58772 | - | 417 | WP_121572286.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| KI228_RS23565 (CIAM_46050) | 58769..58999 | - | 231 | WP_121572285.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| KI228_RS23570 (CIAM_46060) | 59273..60298 | + | 1026 | WP_121572284.1 | hypothetical protein | - |
| KI228_RS23575 (CIAM_46070) | 60346..61284 | - | 939 | WP_121572283.1 | hypothetical protein | - |
| KI228_RS23580 (CIAM_46080) | 61894..62256 | + | 363 | WP_039265233.1 | hypothetical protein | - |
| KI228_RS23585 (CIAM_46090) | 62319..62885 | + | 567 | WP_141227225.1 | hypothetical protein | - |
| KI228_RS23590 (CIAM_46100) | 62882..63661 | + | 780 | WP_141227226.1 | site-specific integrase | - |
| KI228_RS23595 (CIAM_46110) | 63996..64526 | + | 531 | WP_039265231.1 | hypothetical protein | - |
| KI228_RS23600 (CIAM_46120) | 64607..64846 | - | 240 | WP_141227227.1 | hypothetical protein | - |
| KI228_RS23605 (CIAM_46140) | 65333..66130 | + | 798 | WP_039265229.1 | hypothetical protein | - |
| KI228_RS23610 (CIAM_46150) | 66359..66676 | - | 318 | WP_141227228.1 | hypothetical protein | - |
| KI228_RS23615 | 66869..68016 | + | 1148 | Protein_69 | IS3 family transposase ISEhe3 | Transposase |
| KI228_RS23620 (CIAM_46180) | 68287..68589 | - | 303 | WP_039265217.1 | hypothetical protein | - |
| KI228_RS23625 (CIAM_46190) | 68586..69212 | - | 627 | WP_039265216.1 | ParA family plasmid-partitioning AAA ATPase | - |
| KI228_RS23630 (CIAM_46200) | 69486..70838 | + | 1353 | WP_039265215.1 | hypothetical protein | - |
| KI228_RS23635 (CIAM_46210) | 71113..71868 | - | 756 | WP_039265214.1 | replication initiation protein RepE | - |
| KI228_RS23640 (CIAM_46220) | 72312..73583 | - | 1272 | WP_039265213.1 | Y-family DNA polymerase | - |
| KI228_RS23645 (CIAM_46230) | 73583..74014 | - | 432 | WP_039265212.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| KI228_RS23650 (CIAM_46240) | 74246..75217 | + | 972 | WP_084635667.1 | plasmid segregation protein ParM | - |
| KI228_RS23655 (CIAM_46250) | 75220..75885 | + | 666 | WP_039265210.1 | plasmid partitioning/stability family protein | - |
| KI228_RS23660 (CIAM_46260) | 75889..76152 | + | 264 | WP_039265209.1 | hypothetical protein | - |
| KI228_RS23665 (CIAM_46270) | 76181..76384 | + | 204 | WP_039265208.1 | hypothetical protein | - |
| KI228_RS23670 (CIAM_46280) | 76768..77235 | + | 468 | WP_039265207.1 | hypothetical protein | - |
| KI228_RS23675 (CIAM_46290) | 77632..78324 | + | 693 | WP_039265206.1 | DNA methylase | - |
| KI228_RS23680 (CIAM_46300) | 78321..78542 | + | 222 | WP_141227229.1 | hypothetical protein | - |
| KI228_RS23685 (CIAM_46310) | 78599..79021 | + | 423 | WP_141227230.1 | DUF1380 family protein | - |
| KI228_RS23690 (CIAM_46320) | 79378..79806 | + | 429 | WP_039265203.1 | antirestriction protein | - |
| KI228_RS23695 | 79849..80045 | + | 197 | Protein_85 | hypothetical protein | - |
| KI228_RS24495 | 80229..80363 | + | 135 | WP_263440520.1 | hypothetical protein | - |
| KI228_RS23700 (CIAM_46340) | 80866..81138 | + | 273 | WP_141227231.1 | hypothetical protein | - |
| KI228_RS23705 (CIAM_46350) | 81182..81547 | + | 366 | WP_141227232.1 | hypothetical protein | - |
| KI228_RS23710 (CIAM_46360) | 81615..83627 | + | 2013 | WP_141227233.1 | ParB/RepB/Spo0J family partition protein | - |
| KI228_RS23715 (CIAM_46370) | 83665..84099 | + | 435 | WP_141227234.1 | conjugation system SOS inhibitor PsiB | - |
| KI228_RS23720 (CIAM_46380) | 84096..84827 | + | 732 | WP_141227235.1 | plasmid SOS inhibition protein A | - |
| KI228_RS23725 (CIAM_46390) | 84824..85054 | + | 231 | WP_102889948.1 | hypothetical protein | - |
| KI228_RS23730 (CIAM_46400) | 85096..85290 | + | 195 | WP_141227246.1 | hypothetical protein | - |
| KI228_RS24435 | 85466..85606 | + | 141 | WP_224267613.1 | DUF5431 family protein | - |
| KI228_RS23735 (CIAM_46410) | 85557..85682 | + | 126 | WP_223540704.1 | type I toxin-antitoxin system Hok family toxin | - |
| KI228_RS23740 (CIAM_46420) | 85948..86433 | - | 486 | WP_141227236.1 | cytoplasmic protein | - |
| KI228_RS23745 (CIAM_46440) | 87063..87377 | + | 315 | WP_141227237.1 | hypothetical protein | - |
| KI228_RS23750 (CIAM_46450) | 87487..87645 | + | 159 | WP_224267620.1 | hypothetical protein | - |
| KI228_RS23755 (CIAM_46460) | 87794..87940 | + | 147 | WP_047353114.1 | hypothetical protein | - |
| KI228_RS23760 (CIAM_46470) | 87981..88772 | + | 792 | WP_141227239.1 | N-6 DNA methylase | - |
| KI228_RS23765 (CIAM_46480) | 88816..89151 | + | 336 | WP_141227240.1 | hypothetical protein | - |
| KI228_RS23770 (CIAM_46490) | 89843..90136 | + | 294 | WP_071580395.1 | hypothetical protein | - |
| KI228_RS23775 (CIAM_46500) | 90153..90974 | + | 822 | WP_141227180.1 | DUF932 domain-containing protein | - |
| KI228_RS23780 (CIAM_46510) | 91003..91542 | - | 540 | WP_141227181.1 | hypothetical protein | VF |
| KI228_RS23785 (CIAM_46520) | 92116..92511 | + | 396 | WP_141227182.1 | conjugal transfer protein | - |
| KI228_RS23790 (CIAM_46530) | 92544..93185 | - | 642 | WP_141227183.1 | Arc family DNA-binding protein | - |
| KI228_RS23795 (CIAM_46540) | 93384..93737 | + | 354 | WP_141227184.1 | type IV conjugative transfer system pilin TraA | - |
| KI228_RS23800 (CIAM_46550) | 93741..94043 | + | 303 | WP_141227185.1 | type IV conjugative transfer system protein TraL | - |
| KI228_RS23805 (CIAM_46560) | 94049..94633 | + | 585 | WP_141227186.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| KI228_RS23810 (CIAM_46570) | 94645..95385 | + | 741 | WP_141227187.1 | type-F conjugative transfer system secretin TraK | - |
| KI228_RS23815 (CIAM_46580) | 95382..96791 | + | 1410 | WP_141227188.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| KI228_RS23820 (CIAM_46590) | 96975..97397 | + | 423 | WP_141227189.1 | hypothetical protein | - |
| KI228_RS23825 (CIAM_46600) | 97469..98023 | + | 555 | WP_141227190.1 | type IV conjugative transfer system lipoprotein TraV | - |
| KI228_RS23830 (CIAM_46610) | 98020..98217 | + | 198 | WP_141227191.1 | hypothetical protein | - |
| KI228_RS23835 (CIAM_46620) | 98214..100814 | + | 2601 | WP_141227192.1 | type IV secretion system protein TraC | - |
| KI228_RS23840 (CIAM_46630) | 100811..101227 | + | 417 | WP_141227193.1 | type-F conjugative transfer system protein TrbI | - |
| KI228_RS23845 (CIAM_46640) | 101224..101859 | + | 636 | WP_141227194.1 | type-F conjugative transfer system protein TraW | - |
| KI228_RS23850 (CIAM_46650) | 101856..102149 | + | 294 | WP_141227195.1 | hypothetical protein | - |
| KI228_RS23855 (CIAM_46660) | 102140..103168 | + | 1029 | WP_141227196.1 | hypothetical protein | - |
| KI228_RS23860 (CIAM_46670) | 103271..103492 | + | 222 | WP_141227197.1 | hypothetical protein | - |
| KI228_RS23865 (CIAM_46680) | 103556..103879 | + | 324 | WP_141227198.1 | hypothetical protein | - |
| KI228_RS23870 (CIAM_46690) | 103936..104874 | + | 939 | WP_249413431.1 | conjugal transfer pilus assembly protein TraU | - |
| KI228_RS23875 (CIAM_46700) | 104884..105504 | + | 621 | WP_141227200.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| KI228_RS23880 (CIAM_46710) | 105501..107339 | + | 1839 | WP_141227201.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| KI228_RS23885 (CIAM_46720) | 107339..108118 | + | 780 | WP_141227242.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| KI228_RS23890 (CIAM_46730) | 108128..108616 | + | 489 | WP_141227202.1 | hypothetical protein | - |
| KI228_RS23895 (CIAM_46740) | 108606..108824 | + | 219 | WP_141227203.1 | hypothetical protein | - |
| KI228_RS23900 (CIAM_46750) | 108814..109419 | + | 606 | WP_141227204.1 | F-type conjugal transfer protein TrbB | - |
| KI228_RS23905 (CIAM_46760) | 109539..109808 | + | 270 | WP_141227205.1 | hypothetical protein | - |
| KI228_RS23910 (CIAM_46770) | 109801..111165 | + | 1365 | WP_141227206.1 | conjugal transfer pilus assembly protein TraH | - |
| KI228_RS23915 (CIAM_46780) | 111165..114170 | + | 3006 | WP_141227207.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| KI228_RS23920 (CIAM_46790) | 114179..114892 | + | 714 | WP_141227208.1 | hypothetical protein | - |
| KI228_RS23925 (CIAM_46800) | 115041..115772 | + | 732 | WP_141227209.1 | conjugal transfer complement resistance protein TraT | - |
| KI228_RS23930 (CIAM_46820) | 116404..118959 | + | 2556 | WP_212807619.1 | type IV conjugative transfer system coupling protein TraD | - |
| KI228_RS23935 (CIAM_46830) | 118956..124379 | + | 5424 | WP_212807621.1 | Multifunctional conjugation protein TraI | Relaxase |
| KI228_RS23940 (CIAM_46840) | 124408..125196 | + | 789 | WP_141227211.1 | DsbA family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|