MGE detailed information
MGE type: Genomic_island MGE length: 47002 bp
Accession: NZ_AP024555 Location: 2881825..2928826 Organism: Vibrio cholerae strain IDH-03506 Replicon: chromosome
Accession: NZ_AP024555 Location: 2881825..2928826 Organism: Vibrio cholerae strain IDH-03506 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J79_RS13135 | 2876937..2877371 | - | 435 | WP_000815876.1 | type II toxin-antitoxin system RatA family toxin | - |
| K6J79_RS13140 | 2877555..2878040 | + | 486 | WP_000162689.1 | SsrA-binding protein SmpB | - |
| K6J79_RS13150 | 2878642..2879910 | + | 1269 | WP_001107728.1 | integrase domain-containing protein | - |
| K6J79_RS13155 | 2879915..2880315 | + | 401 | Protein_2516 | transposase | - |
| K6J79_RS13165 | 2881825..2886387 | - | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| K6J79_RS13170 | 2886561..2887208 | + | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| K6J79_RS13175 | 2887211..2888119 | - | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| K6J79_RS13180 | 2888128..2888565 | - | 438 | WP_001899524.1 | RDD family protein | - |
| K6J79_RS13185 | 2888617..2889386 | - | 770 | Protein_2521 | accessory colonization factor AcfC | - |
| K6J79_RS13190 | 2889392..2891272 | - | 1881 | WP_000672505.1 | methyl-accepting chemotaxis protein AcfB | - |
| K6J79_RS13195 | 2891279..2892040 | - | 762 | WP_000456980.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| K6J79_RS13200 | 2892040..2892870 | - | 831 | WP_000579582.1 | pilus/toxin transcriptional regulator ToxT | - |
| K6J79_RS13205 | 2893077..2894093 | - | 1017 | WP_001269573.1 | colonization factor TcpF | - |
| K6J79_RS13210 | 2894103..2894888 | - | 786 | Protein_2526 | toxin-coregulated pilus assembly protein TcpE | - |
| K6J79_RS13215 | 2894924..2896135 | - | 1212 | WP_001122813.1 | IS256 family transposase | - |
| K6J79_RS13220 | 2896193..2896438 | - | 246 | Protein_2528 | type II secretion system F family protein | - |
| K6J79_RS13225 | 2896413..2897924 | - | 1512 | WP_000020697.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| K6J79_RS13230 | 2897914..2898372 | - | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| K6J79_RS13235 | 2898388..2899224 | - | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| K6J79_RS13240 | 2899212..2899667 | - | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| K6J79_RS13245 | 2899660..2901129 | - | 1470 | WP_000750979.1 | toxin-coregulated pilus secretin TcpC | - |
| K6J79_RS13250 | 2901132..2901584 | - | 453 | WP_000742753.1 | toxin-coregulated pilus protein TcpQ | - |
| K6J79_RS13255 | 2901584..2902876 | - | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| K6J79_RS13260 | 2902956..2903630 | - | 675 | WP_001176375.1 | toxin-coregulated pilus major pilin TcpA | - |
| K6J79_RS13265 | 2904174..2904584 | - | 411 | WP_000549073.1 | toxin-coregulated pilus protein TcpH | - |
| K6J79_RS13270 | 2904569..2905234 | - | 666 | WP_000542596.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| K6J79_RS13275 | 2905676..2907538 | + | 1863 | WP_000591844.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| K6J79_RS13280 | 2907814..2908308 | - | 495 | WP_000218964.1 | thiol peroxidase | - |
| K6J79_RS13285 | 2908418..2909356 | - | 939 | WP_001232137.1 | hypothetical protein | - |
| K6J79_RS13290 | 2909353..2913954 | - | 4602 | WP_000482254.1 | membrane protein | - |
| K6J79_RS13295 | 2914067..2917108 | - | 3042 | WP_001880619.1 | M66 family metalloprotease | - |
| K6J79_RS13300 | 2917288..2918809 | + | 1522 | Protein_2544 | aldehyde dehydrogenase | - |
| K6J79_RS13305 | 2919151..2919831 | + | 681 | Protein_2545 | IS5 family transposase | - |
| K6J79_RS13310 | 2919857..2920834 | - | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| K6J79_RS13315 | 2921438..2922799 | + | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| K6J79_RS13320 | 2922796..2923263 | + | 468 | WP_000804849.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| K6J79_RS13325 | 2923691..2924269 | + | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| K6J79_RS13330 | 2924273..2927209 | + | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| K6J79_RS13335 | 2927279..2927983 | + | 705 | WP_001880605.1 | nuclease-related domain-containing protein | - |
| K6J79_RS13340 | 2928317..2928826 | - | 510 | WP_001077909.1 | hypothetical protein | - |
| K6J79_RS13345 | 2929024..2930703 | - | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| K6J79_RS13350 | 2930926..2931609 | + | 684 | WP_000841479.1 | VC0807 family protein | - |
| K6J79_RS13355 | 2931677..2933293 | - | 1617 | WP_000620446.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|