MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 123535 bp
Accession: NZ_AP024555 Location: 20969..144503 Organism: Vibrio cholerae strain IDH-03506 Replicon: chromosome
Accession: NZ_AP024555 Location: 20969..144503 Organism: Vibrio cholerae strain IDH-03506 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J79_RS00070 | 16774..17259 | + | 486 | WP_001911251.1 | inosine/xanthosine triphosphatase | - |
| K6J79_RS00075 | 17337..17648 | - | 312 | WP_000250616.1 | trp operon repressor | - |
| K6J79_RS00080 | 17703..19650 | - | 1948 | Protein_10 | murein transglycosylase | - |
| K6J79_RS00085 | 20012..21679 | + | 1668 | WP_000852865.1 | energy-dependent translational throttle protein EttA | - |
| K6J79_RS00090 | 21850..22221 | + | 372 | WP_000570783.1 | PilZ domain-containing protein | - |
| K6J79_RS00095 | 22288..23415 | - | 1128 | WP_000257629.1 | T-protein | VF |
| K6J79_RS00100 | 23428..24501 | - | 1074 | WP_000747937.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| K6J79_RS00105 | 24743..26419 | + | 1677 | WP_000364257.1 | Sensor histidine kinase BtsS | VF |
| K6J79_RS00110 | 26429..27142 | + | 714 | WP_000947378.1 | Transcriptional regulatory protein BtsR | VF |
| K6J79_RS00115 | 27169..28161 | - | 993 | WP_000529115.1 | beta-N-acetylhexosaminidase | - |
| K6J79_RS00120 | 28267..29379 | + | 1113 | WP_000840717.1 | anhydro-N-acetylmuramic acid kinase | - |
| K6J79_RS00125 | 29397..30320 | + | 924 | WP_000180252.1 | N-acetylmuramic acid 6-phosphate etherase | - |
| K6J79_RS00130 | 30344..32140 | - | 1797 | WP_000544193.1 | sodium:proton antiporter | - |
| K6J79_RS00135 | 32159..32500 | - | 342 | WP_001883835.1 | DUF2799 domain-containing protein | - |
| K6J79_RS00140 | 32753..34237 | + | 1485 | WP_000964317.1 | carbon starvation protein A | - |
| K6J79_RS00145 | 34374..35336 | - | 963 | WP_001883831.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| K6J79_RS00150 | 35371..35806 | - | 436 | Protein_24 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| K6J79_RS00155 | 35969..36484 | - | 516 | WP_000071968.1 | Lipoprotein signal peptidase | VF |
| K6J79_RS00160 | 36500..39349 | - | 2850 | WP_000006088.1 | isoleucine--tRNA ligase | - |
| K6J79_RS00165 | 39380..40348 | - | 969 | WP_000420406.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| K6J79_RS00170 | 40417..41979 | - | 1563 | WP_001911253.1 | murein biosynthesis integral membrane protein MurJ | - |
| K6J79_RS00175 | 42237..42497 | + | 261 | WP_000002742.1 | 30S ribosomal protein S20 | - |
| K6J79_RS00180 | 42566..42868 | - | 303 | WP_001053149.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| K6J79_RS00185 | 43091..43981 | - | 891 | WP_000018876.1 | Transcriptional activator protein NhaR | VF |
| K6J79_RS00190 | 44376..45524 | + | 1149 | WP_000609761.1 | Na/Pi cotransporter family protein | - |
| K6J79_RS00195 | 45617..46468 | - | 852 | WP_001250353.1 | thymidylate synthase | - |
| K6J79_RS00200 | 46478..47293 | - | 816 | WP_001135560.1 | prolipoprotein diacylglyceryl transferase | - |
| K6J79_RS00205 | 47322..48116 | - | 795 | WP_001019422.1 | sulfite exporter TauE/SafE family protein | - |
| K6J79_RS00210 | 48126..50372 | - | 2247 | WP_000952226.1 | phosphoenolpyruvate--protein phosphotransferase | - |
| K6J79_RS00215 | 50375..50893 | - | 519 | WP_001911254.1 | RNA pyrophosphohydrolase | - |
| K6J79_RS00220 | 51524..52189 | + | 666 | WP_000801223.1 | DNA mismatch repair endonuclease MutH | - |
| K6J79_RS00225 | 52406..53440 | + | 1035 | WP_001200442.1 | NADP(H)-dependent aldo-keto reductase | - |
| K6J79_RS00230 | 53478..53729 | - | 252 | WP_001249919.1 | hypothetical protein | - |
| K6J79_RS00235 | 54307..55641 | - | 1335 | WP_000107102.1 | Transcriptional regulatory protein ZraR | VF |
| K6J79_RS00240 | 55915..57447 | - | 1533 | WP_000128764.1 | lysine--tRNA ligase | - |
| K6J79_RS00250 | 58746..60059 | - | 1314 | WP_000815019.1 | branched-chain amino acid transport system II carrier protein | - |
| K6J79_RS00255 | 60368..61090 | + | 723 | WP_000856169.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| K6J79_RS00260 | 61178..62449 | + | 1272 | WP_000597951.1 | ATP-dependent RNA helicase SrmB | - |
| K6J79_RS00265 | 62571..64160 | - | 1590 | WP_000013192.1 | peptide chain release factor 3 | - |
| K6J79_RS00270 | 64417..65064 | - | 648 | WP_000854920.1 | LexA family transcriptional regulator | - |
| K6J79_RS00275 | 65182..65433 | + | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| K6J79_RS00280 | 65489..66359 | + | 871 | Protein_50 | hypothetical protein | - |
| K6J79_RS00285 | 66346..67008 | + | 663 | WP_001158521.1 | DUF6475 domain-containing protein | - |
| K6J79_RS00290 | 66995..67543 | + | 549 | WP_000848909.1 | lytic transglycosylase domain-containing protein | - |
| K6J79_RS00295 | 67540..67839 | + | 300 | WP_000210564.1 | flagellar transcriptional regulator FlhD | - |
| K6J79_RS00300 | 67836..68369 | + | 534 | WP_000566755.1 | FlhC family transcriptional regulator | - |
| K6J79_RS00305 | 68427..68858 | + | 432 | WP_000183214.1 | entry exclusion protein EexR | - |
| K6J79_RS00310 | 68891..72460 | - | 3570 | WP_000263683.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| K6J79_RS00315 | 72464..73852 | - | 1389 | WP_000755289.1 | conjugal transfer protein TraH | - |
| K6J79_RS00320 | 73855..74799 | - | 945 | WP_001260107.1 | conjugal transfer protein TraF | - |
| K6J79_RS00325 | 75056..76015 | - | 960 | WP_000198593.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| K6J79_RS00330 | 76303..76776 | + | 474 | WP_000777554.1 | Dihydrofolate reductase type 1 | ARG |
| K6J79_RS00335 | 76911..77306 | + | 396 | WP_000096366.1 | hypothetical protein | - |
| K6J79_RS00340 | 77504..77914 | + | 411 | WP_000592337.1 | helix-turn-helix transcriptional regulator | - |
| K6J79_RS00345 | 77985..78347 | + | 363 | WP_000201475.1 | DUF1801 domain-containing protein | - |
| K6J79_RS00350 | 78447..79148 | + | 702 | WP_001901434.1 | helix-turn-helix transcriptional regulator | - |
| K6J79_RS00355 | 79145..79528 | - | 384 | WP_223225475.1 | VOC family protein | - |
| K6J79_RS00360 | 79821..80528 | - | 708 | WP_000989526.1 | hypothetical protein | - |
| K6J79_RS00365 | 80619..81692 | - | 1074 | WP_001207590.1 | primase-helicase zinc-binding domain-containing protein | - |
| K6J79_RS00370 | 81783..82124 | - | 342 | WP_001081787.1 | hypothetical protein | - |
| K6J79_RS00375 | 82124..82621 | - | 498 | WP_000797297.1 | DNA repair protein RadC | - |
| K6J79_RS00380 | 82707..84362 | - | 1656 | WP_001016320.1 | nitric oxide reductase activation protein NorD | - |
| K6J79_RS00385 | 84432..84872 | - | 441 | WP_001192023.1 | hypothetical protein | - |
| K6J79_RS00390 | 84934..85887 | - | 954 | WP_000027441.1 | DUF3150 domain-containing protein | - |
| K6J79_RS00395 | 85986..86753 | - | 768 | WP_000970189.1 | hypothetical protein | - |
| K6J79_RS00400 | 86753..87712 | - | 960 | WP_000139695.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| K6J79_RS00405 | 87922..88938 | - | 1017 | WP_000862956.1 | YqaJ viral recombinase family protein | - |
| K6J79_RS00410 | 88999..89142 | - | 144 | WP_000167277.1 | hypothetical protein | - |
| K6J79_RS00415 | 89224..90042 | - | 819 | WP_000414662.1 | phage recombination protein Bet | - |
| K6J79_RS00420 | 90122..90541 | - | 420 | WP_000795985.1 | single-stranded DNA-binding protein | - |
| K6J79_RS00425 | 90557..90883 | - | 327 | WP_000455723.1 | hypothetical protein | - |
| K6J79_RS00430 | 91251..91853 | + | 603 | WP_000035785.1 | hypothetical protein | - |
| K6J79_RS00435 | 91962..92645 | + | 684 | WP_001082313.1 | endonuclease | - |
| K6J79_RS00440 | 92876..93892 | + | 1017 | WP_001918293.1 | AAA family ATPase | - |
| K6J79_RS00445 | 94000..95520 | + | 1521 | WP_221277749.1 | IS21 family transposase ISPa64 | Transposase |
| K6J79_RS00450 | 95490..96245 | + | 756 | WP_000546748.1 | IS21 family transposase ISAlde2 | Transposase |
| K6J79_RS00455 | 96376..97941 | + | 1566 | WP_001918292.1 | hypothetical protein | - |
| K6J79_RS00460 | 98032..101724 | - | 3693 | WP_000805082.1 | conjugal transfer protein TraN | - |
| K6J79_RS00465 | 101727..102755 | - | 1029 | WP_000735886.1 | TraU family protein | - |
| K6J79_RS00470 | 102739..103863 | - | 1125 | WP_001189235.1 | TrbC family F-type conjugative pilus assembly protein | - |
| K6J79_RS00475 | 103874..104386 | - | 513 | WP_001166558.1 | S26 family signal peptidase | - |
| K6J79_RS00480 | 104370..104717 | - | 348 | WP_001044650.1 | hypothetical protein | - |
| K6J79_RS00485 | 104710..107109 | - | 2400 | WP_000648042.1 | type IV secretion system protein TraC | - |
| K6J79_RS00490 | 107109..107801 | - | 693 | WP_001228926.1 | DsbC family protein | - |
| K6J79_RS00495 | 107933..108871 | - | 939 | WP_000356587.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| K6J79_RS00500 | 108864..109655 | - | 792 | WP_000095578.1 | type IV toxin-antitoxin system AbiEi family antitoxin | Antitoxin Detail |
| K6J79_RS00505 | 109876..110262 | - | 387 | WP_000180223.1 | TraA family conjugative transfer protein | - |
| K6J79_RS00510 | 110259..110831 | - | 573 | WP_001944091.1 | type IV conjugative transfer system lipoprotein TraV | - |
| K6J79_RS00515 | 110906..112195 | - | 1290 | WP_000647305.1 | TraB/VirB10 family protein | - |
| K6J79_RS00520 | 112198..113094 | - | 897 | WP_001911237.1 | type-F conjugative transfer system secretin TraK | - |
| K6J79_RS00525 | 113078..113704 | - | 627 | WP_000667170.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| K6J79_RS00530 | 113701..113982 | - | 282 | WP_000433891.1 | type IV conjugative transfer system protein TraL | - |
| K6J79_RS00535 | 114271..114858 | + | 588 | WP_001167482.1 | hypothetical protein | - |
| K6J79_RS00540 | 114885..115520 | - | 636 | WP_000033757.1 | DUF4400 domain-containing protein | - |
| K6J79_RS00545 | 115507..116067 | - | 561 | WP_000546514.1 | hypothetical protein | - |
| K6J79_RS00550 | 116077..117899 | - | 1823 | Protein_104 | conjugative transfer system coupling protein TraD | - |
| K6J79_RS00555 | 117948..120098 | - | 2151 | WP_000475916.1 | MobH family relaxase | - |
| K6J79_RS00560 | 120220..121035 | - | 816 | WP_001125250.1 | abortive infection family protein | - |
| K6J79_RS00565 | 121070..121840 | - | 771 | WP_000158025.1 | hypothetical protein | - |
| K6J79_RS00570 | 121867..123918 | - | 2052 | WP_000279702.1 | protease Lon-related BREX system protein BrxL | - |
| K6J79_RS00575 | 123957..126260 | - | 2304 | WP_000567536.1 | PglZ domain-containing protein | - |
| K6J79_RS00580 | 126273..130013 | - | 3741 | WP_000779609.1 | BREX-1 system adenine-specific DNA-methyltransferase PglX | - |
| K6J79_RS00585 | 130018..133707 | - | 3690 | WP_000152592.1 | BREX system P-loop protein BrxC | - |
| K6J79_RS00590 | 133720..134268 | - | 549 | WP_001115853.1 | hypothetical protein | - |
| K6J79_RS00595 | 134252..135052 | - | 801 | WP_000653856.1 | DUF1819 family protein | - |
| K6J79_RS00600 | 135070..135991 | - | 922 | Protein_114 | WYL domain-containing protein | - |
| K6J79_RS00605 | 136309..136608 | - | 300 | WP_000284114.1 | hypothetical protein | - |
| K6J79_RS00610 | 136696..137601 | - | 906 | WP_000196209.1 | 3'-5' exonuclease | - |
| K6J79_RS00615 | 137985..138242 | - | 258 | WP_000182836.1 | hypothetical protein | - |
| K6J79_RS00620 | 138241..138690 | + | 450 | WP_000116661.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| K6J79_RS00625 | 138698..138931 | + | 234 | Protein_119 | DNA polymerase V subunit UmuC | - |
| K6J79_RS00630 | 139120..139623 | + | 504 | WP_000572562.1 | hypothetical protein | - |
| K6J79_RS00635 | 139681..140892 | + | 1212 | WP_001122813.1 | IS256 family transposase ISSod18 | Transposase |
| K6J79_RS00640 | 140928..141374 | + | 447 | Protein_122 | Phytochrome-like protein cph2 | VF |
| K6J79_RS00645 | 141363..141812 | - | 450 | WP_000214238.1 | Ribosomal-protein-alanine acetyltransferase | VF |
| K6J79_RS00650 | 141809..142216 | - | 408 | WP_000953212.1 | DNA polymerase III subunit psi | - |
| K6J79_RS00655 | 142327..142830 | - | 504 | WP_000908540.1 | N-acetyltransferase | - |
| K6J79_RS00660 | 142814..143341 | - | 528 | WP_000932672.1 | SCP2 domain-containing protein | - |
| K6J79_RS00665 | 143574..145628 | + | 2055 | WP_001111411.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| K6J79_RS00670 | 145736..146749 | + | 1014 | WP_000421327.1 | peptidase U32 family protein | - |
| K6J79_RS00675 | 146761..147639 | + | 879 | WP_000872504.1 | U32 family peptidase | - |
| K6J79_RS00680 | 147692..149029 | - | 1338 | WP_000981941.1 | sodium-coupled multidrug efflux MATE transporter VcrM | - |
| K6J79_RS00685 | 149076..149483 | - | 408 | WP_000887847.1 | MarR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|