MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 146423 bp
Accession: NZ_AP024553 Location: 2367574..2513996 Organism: Vibrio cholerae strain IDH-03329 Replicon: chromosome
Accession: NZ_AP024553 Location: 2367574..2513996 Organism: Vibrio cholerae strain IDH-03329 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J80_RS10675 | 2363379..2363864 | + | 486 | WP_001911251.1 | inosine/xanthosine triphosphatase | - |
| K6J80_RS10680 | 2363942..2364253 | - | 312 | WP_000250616.1 | trp operon repressor | - |
| K6J80_RS10685 | 2364308..2366255 | - | 1948 | Protein_2077 | murein transglycosylase | - |
| K6J80_RS10690 | 2366617..2368284 | + | 1668 | WP_000852865.1 | energy-dependent translational throttle protein EttA | - |
| K6J80_RS10695 | 2368455..2368826 | + | 372 | WP_000570783.1 | PilZ domain-containing protein | - |
| K6J80_RS10700 | 2368893..2370020 | - | 1128 | WP_000257629.1 | T-protein | VF |
| K6J80_RS10705 | 2370033..2371106 | - | 1074 | WP_000747937.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| K6J80_RS10710 | 2371348..2373024 | + | 1677 | WP_000364257.1 | Sensor histidine kinase BtsS | VF |
| K6J80_RS10715 | 2373034..2373747 | + | 714 | WP_000947378.1 | Transcriptional regulatory protein BtsR | VF |
| K6J80_RS10720 | 2373774..2374766 | - | 993 | WP_000529115.1 | beta-N-acetylhexosaminidase | - |
| K6J80_RS10725 | 2374872..2375984 | + | 1113 | WP_000840717.1 | anhydro-N-acetylmuramic acid kinase | - |
| K6J80_RS10730 | 2376002..2376925 | + | 924 | WP_000180252.1 | N-acetylmuramic acid 6-phosphate etherase | - |
| K6J80_RS10735 | 2376949..2378745 | - | 1797 | WP_000544193.1 | sodium:proton antiporter | - |
| K6J80_RS10740 | 2378764..2379105 | - | 342 | WP_001883835.1 | DUF2799 domain-containing protein | - |
| K6J80_RS10745 | 2379358..2380842 | + | 1485 | WP_000964317.1 | carbon starvation protein A | - |
| K6J80_RS10750 | 2380979..2381941 | - | 963 | WP_001883831.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| K6J80_RS10755 | 2381976..2382411 | - | 436 | Protein_2091 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| K6J80_RS10760 | 2382574..2383089 | - | 516 | WP_000071968.1 | Lipoprotein signal peptidase | VF |
| K6J80_RS10765 | 2383105..2385954 | - | 2850 | WP_000006088.1 | isoleucine--tRNA ligase | - |
| K6J80_RS10770 | 2385985..2386953 | - | 969 | WP_000420406.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| K6J80_RS10775 | 2387022..2388584 | - | 1563 | WP_001911253.1 | murein biosynthesis integral membrane protein MurJ | - |
| K6J80_RS10780 | 2388842..2389102 | + | 261 | WP_000002742.1 | 30S ribosomal protein S20 | - |
| K6J80_RS10785 | 2389171..2389473 | - | 303 | WP_001053149.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| K6J80_RS10790 | 2389696..2390586 | - | 891 | WP_000018876.1 | Transcriptional activator protein NhaR | VF |
| K6J80_RS10795 | 2390981..2392129 | + | 1149 | WP_000609761.1 | Na/Pi cotransporter family protein | - |
| K6J80_RS10800 | 2392222..2393073 | - | 852 | WP_001250353.1 | thymidylate synthase | - |
| K6J80_RS10805 | 2393083..2393898 | - | 816 | WP_001135560.1 | prolipoprotein diacylglyceryl transferase | - |
| K6J80_RS10810 | 2393927..2394721 | - | 795 | WP_001019422.1 | sulfite exporter TauE/SafE family protein | - |
| K6J80_RS10815 | 2394731..2396978 | - | 2248 | Protein_2103 | phosphoenolpyruvate--protein phosphotransferase | - |
| K6J80_RS10820 | 2396981..2397499 | - | 519 | WP_001911254.1 | RNA pyrophosphohydrolase | - |
| K6J80_RS10825 | 2398130..2398795 | + | 666 | WP_000801223.1 | DNA mismatch repair endonuclease MutH | - |
| K6J80_RS10830 | 2399012..2400046 | + | 1035 | WP_001200442.1 | NADP(H)-dependent aldo-keto reductase | - |
| K6J80_RS10835 | 2400084..2400335 | - | 252 | WP_001249919.1 | hypothetical protein | - |
| K6J80_RS10840 | 2400913..2402247 | - | 1335 | WP_000107102.1 | Transcriptional regulatory protein ZraR | VF |
| K6J80_RS10845 | 2402521..2404053 | - | 1533 | WP_000128764.1 | lysine--tRNA ligase | - |
| K6J80_RS10855 | 2405352..2406665 | - | 1314 | WP_000815019.1 | branched-chain amino acid transport system II carrier protein | - |
| K6J80_RS10860 | 2406974..2407696 | + | 723 | WP_000856169.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| K6J80_RS10865 | 2407784..2409055 | + | 1272 | WP_000597951.1 | ATP-dependent RNA helicase SrmB | - |
| K6J80_RS10870 | 2409177..2410766 | - | 1590 | WP_000013192.1 | peptide chain release factor 3 | - |
| K6J80_RS10875 | 2411023..2411670 | - | 648 | WP_000854920.1 | LexA family transcriptional regulator | - |
| K6J80_RS10880 | 2411788..2412039 | + | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| K6J80_RS10885 | 2412095..2412965 | + | 871 | Protein_2117 | hypothetical protein | - |
| K6J80_RS10890 | 2412952..2413614 | + | 663 | WP_001158521.1 | DUF6475 domain-containing protein | - |
| K6J80_RS10895 | 2413601..2414149 | + | 549 | WP_000848909.1 | lytic transglycosylase domain-containing protein | - |
| K6J80_RS10900 | 2414146..2414445 | + | 300 | WP_000210564.1 | flagellar transcriptional regulator FlhD | - |
| K6J80_RS10905 | 2414442..2414975 | + | 534 | WP_000566755.1 | FlhC family transcriptional regulator | - |
| K6J80_RS10910 | 2415033..2415464 | + | 432 | WP_000183214.1 | entry exclusion protein EexR | - |
| K6J80_RS10915 | 2415497..2419066 | - | 3570 | WP_000263683.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| K6J80_RS10920 | 2419070..2420458 | - | 1389 | WP_000755289.1 | conjugal transfer protein TraH | - |
| K6J80_RS10925 | 2420461..2421405 | - | 945 | WP_001260107.1 | conjugal transfer protein TraF | - |
| K6J80_RS10930 | 2421662..2422621 | - | 960 | WP_000198593.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| K6J80_RS10935 | 2422909..2423382 | + | 474 | WP_000777554.1 | Dihydrofolate reductase type 1 | ARG |
| K6J80_RS10940 | 2423517..2423912 | + | 396 | WP_000096366.1 | hypothetical protein | - |
| K6J80_RS10945 | 2424110..2424520 | + | 411 | WP_000592337.1 | helix-turn-helix transcriptional regulator | - |
| K6J80_RS10950 | 2424591..2424953 | + | 363 | WP_000201475.1 | DUF1801 domain-containing protein | - |
| K6J80_RS10955 | 2425053..2425754 | + | 702 | WP_001901434.1 | helix-turn-helix transcriptional regulator | - |
| K6J80_RS10960 | 2425751..2426134 | - | 384 | WP_223225475.1 | VOC family protein | - |
| K6J80_RS10965 | 2426427..2427134 | - | 708 | WP_000989526.1 | hypothetical protein | - |
| K6J80_RS10970 | 2427225..2428298 | - | 1074 | WP_001207590.1 | primase-helicase zinc-binding domain-containing protein | - |
| K6J80_RS10975 | 2428389..2428730 | - | 342 | WP_001081787.1 | hypothetical protein | - |
| K6J80_RS10980 | 2428730..2429227 | - | 498 | WP_000797297.1 | DNA repair protein RadC | - |
| K6J80_RS10985 | 2429313..2430968 | - | 1656 | WP_001016320.1 | nitric oxide reductase activation protein NorD | - |
| K6J80_RS10990 | 2431038..2431478 | - | 441 | WP_001192023.1 | hypothetical protein | - |
| K6J80_RS10995 | 2431540..2432493 | - | 954 | WP_000027441.1 | DUF3150 domain-containing protein | - |
| K6J80_RS11000 | 2432592..2433359 | - | 768 | WP_000970189.1 | hypothetical protein | - |
| K6J80_RS11005 | 2433359..2434318 | - | 960 | WP_000139695.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| K6J80_RS11010 | 2434528..2435544 | - | 1017 | WP_000862956.1 | YqaJ viral recombinase family protein | - |
| K6J80_RS11015 | 2435605..2435748 | - | 144 | WP_000167277.1 | hypothetical protein | - |
| K6J80_RS11020 | 2435830..2436648 | - | 819 | WP_000414662.1 | phage recombination protein Bet | - |
| K6J80_RS11025 | 2436728..2437147 | - | 420 | WP_000795985.1 | single-stranded DNA-binding protein | - |
| K6J80_RS11030 | 2437163..2437489 | - | 327 | WP_000455723.1 | hypothetical protein | - |
| K6J80_RS11035 | 2437857..2438459 | + | 603 | WP_000035785.1 | hypothetical protein | - |
| K6J80_RS11040 | 2438568..2439251 | + | 684 | WP_001082313.1 | endonuclease | - |
| K6J80_RS11045 | 2439482..2440498 | + | 1017 | WP_001918293.1 | AAA family ATPase | - |
| K6J80_RS11050 | 2440606..2442105 | + | 1500 | WP_113706005.1 | IS21 family transposase ISCte8 | Transposase |
| K6J80_RS11055 | 2442095..2442850 | + | 756 | WP_000546748.1 | IS21 family transposase ISAlde2 | Transposase |
| K6J80_RS11060 | 2442981..2444546 | + | 1566 | WP_001918292.1 | hypothetical protein | - |
| K6J80_RS11065 | 2444637..2448329 | - | 3693 | WP_000805082.1 | conjugal transfer protein TraN | - |
| K6J80_RS11070 | 2448332..2449360 | - | 1029 | WP_000735886.1 | TraU family protein | - |
| K6J80_RS11075 | 2449344..2450468 | - | 1125 | WP_001189235.1 | TrbC family F-type conjugative pilus assembly protein | - |
| K6J80_RS11080 | 2450479..2450991 | - | 513 | WP_001166558.1 | S26 family signal peptidase | - |
| K6J80_RS11085 | 2450975..2451322 | - | 348 | WP_001044650.1 | hypothetical protein | - |
| K6J80_RS11090 | 2451315..2453714 | - | 2400 | WP_000648042.1 | type IV secretion system protein TraC | - |
| K6J80_RS11095 | 2453714..2454406 | - | 693 | WP_001228926.1 | DsbC family protein | - |
| K6J80_RS11100 | 2454538..2455476 | - | 939 | WP_000356587.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| K6J80_RS11105 | 2455469..2456260 | - | 792 | WP_000095578.1 | type IV toxin-antitoxin system AbiEi family antitoxin | Antitoxin Detail |
| K6J80_RS11110 | 2456481..2456867 | - | 387 | WP_000180223.1 | TraA family conjugative transfer protein | - |
| K6J80_RS11115 | 2456864..2457436 | - | 573 | WP_001944091.1 | type IV conjugative transfer system lipoprotein TraV | - |
| K6J80_RS11120 | 2457511..2458800 | - | 1290 | WP_000647305.1 | TraB/VirB10 family protein | - |
| K6J80_RS11125 | 2458803..2459699 | - | 897 | WP_001911237.1 | type-F conjugative transfer system secretin TraK | - |
| K6J80_RS11130 | 2459683..2460309 | - | 627 | WP_000667170.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| K6J80_RS11135 | 2460306..2460587 | - | 282 | WP_000433891.1 | type IV conjugative transfer system protein TraL | - |
| K6J80_RS11140 | 2460876..2461463 | + | 588 | WP_001167482.1 | hypothetical protein | - |
| K6J80_RS11145 | 2461490..2462125 | - | 636 | WP_000033757.1 | DUF4400 domain-containing protein | - |
| K6J80_RS11150 | 2462112..2462672 | - | 561 | WP_000546514.1 | hypothetical protein | - |
| K6J80_RS11155 | 2462682..2464503 | - | 1822 | Protein_2171 | conjugative transfer system coupling protein TraD | - |
| K6J80_RS11160 | 2464552..2466702 | - | 2151 | WP_000475916.1 | MobH family relaxase | - |
| K6J80_RS11165 | 2466824..2467639 | - | 816 | WP_001125250.1 | abortive infection family protein | - |
| K6J80_RS11170 | 2467674..2468444 | - | 771 | WP_000158025.1 | hypothetical protein | - |
| K6J80_RS11175 | 2468471..2470522 | - | 2052 | WP_000279702.1 | protease Lon-related BREX system protein BrxL | - |
| K6J80_RS11180 | 2470561..2472864 | - | 2304 | WP_000567536.1 | PglZ domain-containing protein | - |
| K6J80_RS11185 | 2472877..2476617 | - | 3741 | WP_000779609.1 | BREX-1 system adenine-specific DNA-methyltransferase PglX | - |
| K6J80_RS11190 | 2476622..2480311 | - | 3690 | WP_000152592.1 | BREX system P-loop protein BrxC | - |
| K6J80_RS11195 | 2480324..2480872 | - | 549 | WP_001115853.1 | hypothetical protein | - |
| K6J80_RS11200 | 2480856..2481656 | - | 801 | WP_000653856.1 | DUF1819 family protein | - |
| K6J80_RS11205 | 2481674..2482595 | - | 922 | Protein_2181 | WYL domain-containing protein | - |
| K6J80_RS11210 | 2482913..2483212 | - | 300 | WP_000284114.1 | hypothetical protein | - |
| K6J80_RS11215 | 2483300..2484205 | - | 906 | WP_000196209.1 | 3'-5' exonuclease | - |
| K6J80_RS11220 | 2484589..2484846 | - | 258 | WP_000182836.1 | hypothetical protein | - |
| K6J80_RS11225 | 2484845..2485294 | + | 450 | WP_000116661.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| K6J80_RS11230 | 2485302..2485535 | + | 234 | Protein_2186 | DNA polymerase V subunit UmuC | - |
| K6J80_RS11235 | 2485724..2486227 | + | 504 | WP_000572562.1 | hypothetical protein | - |
| K6J80_RS11240 | 2486285..2487496 | + | 1212 | WP_001122813.1 | IS256 family transposase ISSod18 | Transposase |
| K6J80_RS11245 | 2487533..2488839 | - | 1307 | Protein_2189 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| K6J80_RS11250 | 2489310..2490125 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| K6J80_RS11255 | 2490186..2490989 | + | 804 | WP_001082316.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| K6J80_RS11260 | 2490989..2491825 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| K6J80_RS11265 | 2491932..2492336 | - | 405 | Protein_2193 | IS91 family transposase ISPps1 | Transposase |
| K6J80_RS11270 | 2492448..2492753 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| K6J80_RS11275 | 2492781..2493995 | - | 1215 | WP_000214119.1 | Bicyclomycin resistance protein | ARG |
| K6J80_RS18920 | 2494212..2495096 | - | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| K6J80_RS11285 | 2495127..2496620 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| K6J80_RS11290 | 2496732..2496923 | - | 192 | Protein_2198 | hypothetical protein | - |
| K6J80_RS11295 | 2497038..2500016 | - | 2979 | WP_000985631.1 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| K6J80_RS11300 | 2500130..2500723 | - | 594 | WP_000107352.1 | Tn3 family transposase TnpA_IS3000 | Transposase |
| K6J80_RS11305 | 2501007..2502179 | + | 1173 | WP_001142610.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| K6J80_RS11310 | 2502190..2502633 | - | 444 | WP_000348524.1 | conjugative transfer protein MobI(A/C) | - |
| K6J80_RS11315 | 2503098..2504072 | + | 975 | WP_000497807.1 | ParM/StbA family protein | - |
| K6J80_RS11320 | 2504075..2504344 | + | 270 | WP_001995600.1 | hypothetical protein | - |
| K6J80_RS11325 | 2504346..2505587 | + | 1242 | WP_001218618.1 | Prophage integrase IntS ; Integrase | Integrase |
| K6J80_RS11330 | 2505717..2507735 | - | 2019 | WP_000211147.1 | ATP-binding protein | - |
| K6J80_RS11335 | 2507881..2508069 | - | 189 | WP_000127615.1 | hypothetical protein | - |
| K6J80_RS11340 | 2508810..2510867 | + | 2058 | WP_000160066.1 | putative signaling protein | VF |
| K6J80_RS11345 | 2510856..2511305 | - | 450 | WP_000214238.1 | Ribosomal-protein-alanine acetyltransferase | VF |
| K6J80_RS11350 | 2511302..2511709 | - | 408 | WP_000953212.1 | DNA polymerase III subunit psi | - |
| K6J80_RS11355 | 2511820..2512323 | - | 504 | WP_000908540.1 | N-acetyltransferase | - |
| K6J80_RS11360 | 2512307..2512834 | - | 528 | WP_000932672.1 | SCP2 domain-containing protein | - |
| K6J80_RS11365 | 2513067..2515121 | + | 2055 | WP_001111411.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| K6J80_RS11370 | 2515229..2516242 | + | 1014 | WP_000421327.1 | peptidase U32 family protein | - |
| K6J80_RS11375 | 2516254..2517132 | + | 879 | WP_000872504.1 | U32 family peptidase | - |
| K6J80_RS11380 | 2517185..2518522 | - | 1338 | WP_000981941.1 | sodium-coupled multidrug efflux MATE transporter VcrM | - |
| K6J80_RS11385 | 2518569..2518976 | - | 408 | WP_000887847.1 | MarR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|