MGE detailed information
MGE type: Genomic_island MGE length: 45688 bp
Accession: NZ_AP024553 Location: 2203690..2249377 Organism: Vibrio cholerae strain IDH-03329 Replicon: chromosome
Accession: NZ_AP024553 Location: 2203690..2249377 Organism: Vibrio cholerae strain IDH-03329 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J80_RS09975 | 2198802..2199236 | - | 435 | WP_000815876.1 | type II toxin-antitoxin system RatA family toxin | - |
| K6J80_RS09980 | 2199420..2199905 | + | 486 | WP_000162689.1 | SsrA-binding protein SmpB | - |
| K6J80_RS09990 | 2200507..2201775 | + | 1269 | WP_001107728.1 | integrase domain-containing protein | - |
| K6J80_RS09995 | 2201780..2202180 | + | 401 | Protein_1945 | transposase | - |
| K6J80_RS10005 | 2203690..2208252 | - | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| K6J80_RS10010 | 2208426..2209073 | + | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| K6J80_RS10015 | 2209076..2209984 | - | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| K6J80_RS10020 | 2209993..2210430 | - | 438 | WP_001899524.1 | RDD family protein | - |
| K6J80_RS10025 | 2210482..2211251 | - | 770 | Protein_1950 | accessory colonization factor AcfC | - |
| K6J80_RS10030 | 2211257..2213137 | - | 1881 | WP_000672505.1 | methyl-accepting chemotaxis protein AcfB | - |
| K6J80_RS10035 | 2213144..2213905 | - | 762 | WP_000456980.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| K6J80_RS10040 | 2213905..2214735 | - | 831 | WP_000579582.1 | pilus/toxin transcriptional regulator ToxT | - |
| K6J80_RS10045 | 2214942..2215958 | - | 1017 | WP_001269573.1 | colonization factor TcpF | - |
| K6J80_RS10050 | 2215968..2216990 | - | 1023 | WP_000691946.1 | toxin-coregulated pilus assembly protein TcpE | - |
| K6J80_RS10055 | 2216965..2218476 | - | 1512 | WP_000020697.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| K6J80_RS10060 | 2218466..2218924 | - | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| K6J80_RS10065 | 2218940..2219776 | - | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| K6J80_RS10070 | 2219764..2220219 | - | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| K6J80_RS10075 | 2220212..2221681 | - | 1470 | WP_000750979.1 | toxin-coregulated pilus secretin TcpC | - |
| K6J80_RS10080 | 2221684..2222136 | - | 453 | WP_000742753.1 | toxin-coregulated pilus protein TcpQ | - |
| K6J80_RS10085 | 2222136..2223428 | - | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| K6J80_RS10090 | 2223508..2224182 | - | 675 | WP_001176375.1 | toxin-coregulated pilus major pilin TcpA | - |
| K6J80_RS10095 | 2224726..2225136 | - | 411 | WP_000549073.1 | toxin-coregulated pilus protein TcpH | - |
| K6J80_RS10100 | 2225121..2225786 | - | 666 | WP_000542596.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| K6J80_RS10105 | 2226227..2228089 | + | 1863 | WP_000591844.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| K6J80_RS10110 | 2228365..2228859 | - | 495 | WP_000218964.1 | thiol peroxidase | - |
| K6J80_RS10115 | 2228969..2229907 | - | 939 | WP_001232137.1 | hypothetical protein | - |
| K6J80_RS10120 | 2229904..2234506 | - | 4603 | Protein_1969 | hypothetical protein | - |
| K6J80_RS10125 | 2234619..2237660 | - | 3042 | WP_001880619.1 | M66 family metalloprotease | - |
| K6J80_RS10130 | 2237840..2239360 | + | 1521 | WP_000640055.1 | aldehyde dehydrogenase family protein | - |
| K6J80_RS10135 | 2239702..2240382 | + | 681 | Protein_1972 | IS5 family transposase | - |
| K6J80_RS10140 | 2240408..2241385 | - | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| K6J80_RS10145 | 2241989..2243350 | + | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| K6J80_RS10150 | 2243347..2243814 | + | 468 | WP_000804849.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| K6J80_RS10155 | 2244242..2244820 | + | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| K6J80_RS10160 | 2244824..2247760 | + | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| K6J80_RS10165 | 2247830..2248534 | + | 705 | WP_001880605.1 | nuclease-related domain-containing protein | - |
| K6J80_RS10170 | 2248868..2249377 | - | 510 | WP_001077909.1 | hypothetical protein | - |
| K6J80_RS10175 | 2249575..2251254 | - | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| K6J80_RS10180 | 2251477..2252160 | + | 684 | WP_000841479.1 | VC0807 family protein | - |
| K6J80_RS10185 | 2252228..2253844 | - | 1617 | WP_000620446.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|