MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 123532 bp
Accession: NZ_AP024547 Location: 2637030..2760561 Organism: Vibrio cholerae strain BCH-01536 Replicon: chromosome
Accession: NZ_AP024547 Location: 2637030..2760561 Organism: Vibrio cholerae strain BCH-01536 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J77_RS11970 | 2632835..2633320 | + | 486 | WP_001911251.1 | inosine/xanthosine triphosphatase | - |
| K6J77_RS11975 | 2633398..2633709 | - | 312 | WP_000250616.1 | trp operon repressor | - |
| K6J77_RS11980 | 2633764..2635711 | - | 1948 | Protein_2300 | murein transglycosylase | - |
| K6J77_RS11985 | 2636073..2637740 | + | 1668 | WP_000852865.1 | energy-dependent translational throttle protein EttA | - |
| K6J77_RS11990 | 2637911..2638282 | + | 372 | WP_000570783.1 | PilZ domain-containing protein | - |
| K6J77_RS11995 | 2638349..2639476 | - | 1128 | WP_000257629.1 | hypothetical protein | VF |
| K6J77_RS12000 | 2639489..2640562 | - | 1074 | WP_000747937.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| K6J77_RS12005 | 2640804..2642480 | + | 1677 | WP_000364257.1 | hypothetical protein | VF |
| K6J77_RS12010 | 2642490..2643203 | + | 714 | WP_000947378.1 | Chemotaxis response regulator protein-glutamate methylesterase | VF |
| K6J77_RS12015 | 2643230..2644222 | - | 993 | WP_000529115.1 | beta-N-acetylhexosaminidase | - |
| K6J77_RS12020 | 2644328..2645440 | + | 1113 | WP_000840717.1 | anhydro-N-acetylmuramic acid kinase | - |
| K6J77_RS12025 | 2645458..2646381 | + | 924 | WP_000180252.1 | N-acetylmuramic acid 6-phosphate etherase | - |
| K6J77_RS12030 | 2646405..2648201 | - | 1797 | WP_000544193.1 | sodium:proton antiporter | - |
| K6J77_RS12035 | 2648220..2648561 | - | 342 | WP_001883835.1 | DUF2799 domain-containing protein | - |
| K6J77_RS12040 | 2648814..2650298 | + | 1485 | WP_000964317.1 | carbon starvation protein A | - |
| K6J77_RS12045 | 2650435..2651397 | - | 963 | WP_001883831.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| K6J77_RS12050 | 2651432..2651866 | - | 435 | WP_001068088.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| K6J77_RS12055 | 2652029..2652544 | - | 516 | WP_000071968.1 | Lipoprotein signal peptidase | VF |
| K6J77_RS12060 | 2652560..2655409 | - | 2850 | WP_000006088.1 | isoleucine--tRNA ligase | - |
| K6J77_RS12065 | 2655440..2656408 | - | 969 | WP_000420406.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| K6J77_RS12070 | 2656477..2658039 | - | 1563 | WP_001911253.1 | murein biosynthesis integral membrane protein MurJ | - |
| K6J77_RS12075 | 2658297..2658557 | + | 261 | WP_000002742.1 | 30S ribosomal protein S20 | - |
| K6J77_RS12080 | 2658626..2658928 | - | 303 | WP_001053149.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| K6J77_RS12085 | 2659151..2660041 | - | 891 | WP_000018876.1 | HTH-type transcriptional regulator ArgP | VF |
| K6J77_RS12090 | 2660436..2661585 | + | 1150 | Protein_2322 | Na/Pi cotransporter family protein | - |
| K6J77_RS12095 | 2661678..2662529 | - | 852 | WP_001250353.1 | thymidylate synthase | - |
| K6J77_RS12100 | 2662539..2663354 | - | 816 | WP_001135560.1 | prolipoprotein diacylglyceryl transferase | - |
| K6J77_RS12105 | 2663383..2664177 | - | 795 | WP_001019422.1 | sulfite exporter TauE/SafE family protein | - |
| K6J77_RS12110 | 2664187..2666433 | - | 2247 | WP_000952226.1 | phosphoenolpyruvate--protein phosphotransferase | - |
| K6J77_RS12115 | 2666436..2666954 | - | 519 | WP_001911254.1 | RNA pyrophosphohydrolase | - |
| K6J77_RS12120 | 2667585..2668250 | + | 666 | WP_000801223.1 | DNA mismatch repair endonuclease MutH | - |
| K6J77_RS12125 | 2668467..2669501 | + | 1035 | WP_001200442.1 | NADP(H)-dependent aldo-keto reductase | - |
| K6J77_RS12130 | 2669539..2669790 | - | 252 | WP_001249919.1 | hypothetical protein | - |
| K6J77_RS12135 | 2670368..2671702 | - | 1335 | WP_000107102.1 | Anaerobic nitric oxide reductase transcription regulator NorR | VF |
| K6J77_RS12140 | 2671976..2673508 | - | 1533 | WP_000128764.1 | lysine--tRNA ligase | - |
| K6J77_RS12150 | 2674807..2676120 | - | 1314 | WP_000815019.1 | branched-chain amino acid transport system II carrier protein | - |
| K6J77_RS12155 | 2676429..2677151 | + | 723 | WP_000856169.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| K6J77_RS12160 | 2677239..2678510 | + | 1272 | WP_000597951.1 | ATP-dependent RNA helicase SrmB | - |
| K6J77_RS12165 | 2678632..2680221 | - | 1590 | WP_000013192.1 | peptide chain release factor 3 | - |
| K6J77_RS12170 | 2680478..2681125 | - | 648 | WP_000854920.1 | LexA family transcriptional regulator | - |
| K6J77_RS12175 | 2681243..2681494 | + | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| K6J77_RS12180 | 2681550..2682420 | + | 871 | Protein_2340 | hypothetical protein | - |
| K6J77_RS12185 | 2682461..2683069 | + | 609 | WP_001918295.1 | DUF6475 domain-containing protein | - |
| K6J77_RS12190 | 2683056..2683604 | + | 549 | WP_000848909.1 | lytic transglycosylase domain-containing protein | - |
| K6J77_RS12195 | 2683601..2683900 | + | 300 | WP_000210564.1 | flagellar transcriptional regulator FlhD | - |
| K6J77_RS12200 | 2683897..2684430 | + | 534 | WP_000566755.1 | FlhC family transcriptional regulator | - |
| K6J77_RS12205 | 2684488..2684920 | + | 433 | Protein_2345 | entry exclusion protein EexR | - |
| K6J77_RS12210 | 2684953..2688522 | - | 3570 | WP_000263683.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| K6J77_RS12215 | 2688526..2689914 | - | 1389 | WP_000755289.1 | conjugal transfer protein TraH | - |
| K6J77_RS12220 | 2689917..2690861 | - | 945 | WP_001260107.1 | conjugal transfer protein TraF | - |
| K6J77_RS12225 | 2691118..2692077 | - | 960 | WP_000198593.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| K6J77_RS12230 | 2692365..2692838 | + | 474 | WP_000777554.1 | hypothetical protein | ARG |
| K6J77_RS12235 | 2692973..2693368 | + | 396 | WP_000096366.1 | hypothetical protein | - |
| K6J77_RS12240 | 2693566..2693976 | + | 411 | WP_000592337.1 | helix-turn-helix transcriptional regulator | - |
| K6J77_RS12245 | 2694047..2694409 | + | 363 | WP_000201475.1 | DUF1801 domain-containing protein | - |
| K6J77_RS12250 | 2694509..2695210 | + | 702 | WP_001901434.1 | helix-turn-helix transcriptional regulator | - |
| K6J77_RS12255 | 2695207..2695590 | - | 384 | WP_223225475.1 | VOC family protein | - |
| K6J77_RS12260 | 2695883..2696590 | - | 708 | WP_000989526.1 | hypothetical protein | - |
| K6J77_RS12265 | 2696680..2697753 | - | 1074 | WP_001207590.1 | primase-helicase zinc-binding domain-containing protein | - |
| K6J77_RS12270 | 2697844..2698185 | - | 342 | WP_001081787.1 | hypothetical protein | - |
| K6J77_RS12275 | 2698185..2698682 | - | 498 | WP_000797297.1 | DNA repair protein RadC | - |
| K6J77_RS12280 | 2698767..2700422 | - | 1656 | WP_001016320.1 | nitric oxide reductase activation protein NorD | - |
| K6J77_RS12285 | 2700492..2700932 | - | 441 | WP_001192023.1 | hypothetical protein | - |
| K6J77_RS12290 | 2700994..2701947 | - | 954 | WP_000027441.1 | DUF3150 domain-containing protein | - |
| K6J77_RS12295 | 2702046..2702813 | - | 768 | WP_000970189.1 | hypothetical protein | - |
| K6J77_RS12300 | 2702813..2703772 | - | 960 | WP_000139695.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| K6J77_RS12305 | 2703982..2704998 | - | 1017 | WP_000862956.1 | YqaJ viral recombinase family protein | - |
| K6J77_RS12310 | 2705059..2705202 | - | 144 | WP_000167277.1 | hypothetical protein | - |
| K6J77_RS12315 | 2705284..2706102 | - | 819 | WP_000414662.1 | phage recombination protein Bet | - |
| K6J77_RS12320 | 2706182..2706601 | - | 420 | WP_000795985.1 | single-stranded DNA-binding protein | - |
| K6J77_RS12325 | 2706617..2706943 | - | 327 | WP_000455723.1 | hypothetical protein | - |
| K6J77_RS12330 | 2707311..2707913 | + | 603 | WP_000035785.1 | hypothetical protein | - |
| K6J77_RS12335 | 2708022..2708705 | + | 684 | WP_001082313.1 | endonuclease | - |
| K6J77_RS12340 | 2708936..2709952 | + | 1017 | WP_001918293.1 | AAA family ATPase | - |
| K6J77_RS12345 | 2710060..2711580 | + | 1521 | WP_221277749.1 | IS21 family transposase ISPa64 | Transposase |
| K6J77_RS12350 | 2711550..2712305 | + | 756 | WP_000546748.1 | IS21 family transposase ISAlde2 | Transposase |
| K6J77_RS12355 | 2712436..2714001 | + | 1566 | WP_001918292.1 | hypothetical protein | - |
| K6J77_RS12360 | 2714092..2717784 | - | 3693 | WP_000805082.1 | conjugal transfer protein TraN | - |
| K6J77_RS12365 | 2717787..2718815 | - | 1029 | WP_000735886.1 | TraU family protein | - |
| K6J77_RS12370 | 2718799..2719923 | - | 1125 | WP_001189235.1 | TrbC family F-type conjugative pilus assembly protein | - |
| K6J77_RS12375 | 2719934..2720446 | - | 513 | WP_001166558.1 | S26 family signal peptidase | - |
| K6J77_RS12380 | 2720430..2720777 | - | 348 | WP_001044650.1 | hypothetical protein | - |
| K6J77_RS12385 | 2720770..2723169 | - | 2400 | WP_000648042.1 | type IV secretion system protein TraC | - |
| K6J77_RS12390 | 2723169..2723861 | - | 693 | WP_001228926.1 | DsbC family protein | - |
| K6J77_RS12395 | 2723993..2724931 | - | 939 | WP_000356587.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| K6J77_RS12400 | 2724924..2725715 | - | 792 | WP_000095578.1 | type IV toxin-antitoxin system AbiEi family antitoxin | Antitoxin Detail |
| K6J77_RS12405 | 2725936..2726322 | - | 387 | WP_000180223.1 | TraA family conjugative transfer protein | - |
| K6J77_RS12410 | 2726319..2726891 | - | 573 | WP_001944091.1 | type IV conjugative transfer system lipoprotein TraV | - |
| K6J77_RS12415 | 2726966..2728255 | - | 1290 | WP_000647305.1 | TraB/VirB10 family protein | - |
| K6J77_RS12420 | 2728258..2729154 | - | 897 | WP_001911237.1 | type-F conjugative transfer system secretin TraK | - |
| K6J77_RS12425 | 2729138..2729764 | - | 627 | WP_000667170.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| K6J77_RS12430 | 2729761..2730042 | - | 282 | WP_000433891.1 | type IV conjugative transfer system protein TraL | - |
| K6J77_RS12435 | 2730331..2730918 | + | 588 | WP_001167482.1 | hypothetical protein | - |
| K6J77_RS12440 | 2730945..2731580 | - | 636 | WP_000033757.1 | DUF4400 domain-containing protein | - |
| K6J77_RS12445 | 2731567..2732127 | - | 561 | WP_000546514.1 | hypothetical protein | - |
| K6J77_RS12450 | 2732137..2733957 | - | 1821 | WP_000661888.1 | conjugative transfer system coupling protein TraD | - |
| K6J77_RS12455 | 2734006..2736156 | - | 2151 | WP_000475916.1 | MobH family relaxase | - |
| K6J77_RS12460 | 2736278..2737093 | - | 816 | WP_001125250.1 | abortive infection family protein | - |
| K6J77_RS12465 | 2737128..2737898 | - | 771 | WP_000158025.1 | hypothetical protein | - |
| K6J77_RS12470 | 2737925..2739976 | - | 2052 | WP_000279702.1 | protease Lon-related BREX system protein BrxL | - |
| K6J77_RS12475 | 2740015..2742318 | - | 2304 | WP_000567536.1 | PglZ domain-containing protein | - |
| K6J77_RS12480 | 2742331..2746071 | - | 3741 | WP_000779609.1 | BREX-1 system adenine-specific DNA-methyltransferase PglX | - |
| K6J77_RS12485 | 2746076..2749765 | - | 3690 | WP_000152592.1 | BREX system P-loop protein BrxC | - |
| K6J77_RS12490 | 2749778..2750326 | - | 549 | WP_001115853.1 | hypothetical protein | - |
| K6J77_RS12495 | 2750310..2751110 | - | 801 | WP_000653856.1 | DUF1819 family protein | - |
| K6J77_RS12500 | 2751128..2752049 | - | 922 | Protein_2404 | WYL domain-containing protein | - |
| K6J77_RS12505 | 2752367..2752666 | - | 300 | WP_000284114.1 | hypothetical protein | - |
| K6J77_RS12510 | 2752754..2753659 | - | 906 | WP_000196209.1 | 3'-5' exonuclease | - |
| K6J77_RS12515 | 2754043..2754300 | - | 258 | WP_000182836.1 | hypothetical protein | - |
| K6J77_RS12520 | 2754299..2754748 | + | 450 | WP_000116661.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| K6J77_RS12525 | 2754756..2754989 | + | 234 | Protein_2409 | DNA polymerase V subunit UmuC | - |
| K6J77_RS12530 | 2755178..2755681 | + | 504 | WP_000572562.1 | hypothetical protein | - |
| K6J77_RS12535 | 2755739..2756950 | + | 1212 | WP_001122813.1 | IS256 family transposase ISSod18 | Transposase |
| K6J77_RS12540 | 2756986..2757432 | + | 447 | Protein_2412 | hypothetical protein | VF |
| K6J77_RS12545 | 2757421..2757870 | - | 450 | WP_000214238.1 | Mycothiol acetyltransferase | VF |
| K6J77_RS12550 | 2757867..2758274 | - | 408 | WP_000953212.1 | DNA polymerase III subunit psi | - |
| K6J77_RS12555 | 2758385..2758888 | - | 504 | WP_000908540.1 | N-acetyltransferase | - |
| K6J77_RS12560 | 2758872..2759399 | - | 528 | WP_000932672.1 | SCP2 domain-containing protein | - |
| K6J77_RS12565 | 2759632..2761686 | + | 2055 | WP_001111411.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| K6J77_RS12570 | 2761794..2762807 | + | 1014 | WP_000421327.1 | peptidase U32 family protein | - |
| K6J77_RS12575 | 2762819..2763697 | + | 879 | WP_000872504.1 | U32 family peptidase | - |
| K6J77_RS12580 | 2763750..2765087 | - | 1338 | WP_000981941.1 | sodium-coupled multidrug efflux MATE transporter VcrM | - |
| K6J77_RS12585 | 2765134..2765541 | - | 408 | WP_000887847.1 | MarR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|