MGE detailed information
MGE type: Conjugative plasmid MGE length: 85841 bp
Accession: NZ_AP022817 Location: 1..85841 Organism: Escherichia coli strain JE86-ST05 Replicon: plasmid JE86-ST05_p2
Accession: NZ_AP022817 Location: 1..85841 Organism: Escherichia coli strain JE86-ST05 Replicon: plasmid JE86-ST05_p2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JL003_RS26895 () | 1..879 | + | 879 | WP_000729439.1 | incFII family plasmid replication initiator RepA | - |
| JL003_RS26900 () | 1778..2062 | + | 285 | WP_001178087.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| JL003_RS26905 () | 2062..2337 | + | 276 | WP_000421257.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| JL003_RS26910 () | 2443..2724 | + | 282 | WP_001105066.1 | hypothetical protein | - |
| JL003_RS26915 () | 2915..3181 | - | 267 | WP_000627831.1 | hypothetical protein | - |
| JL003_RS26920 () | 3319..3921 | - | 603 | WP_000517694.1 | hypothetical protein | - |
| JL003_RS26925 () | 4275..5621 | + | 1347 | WP_103927857.1 | hypothetical protein | - |
| JL003_RS26930 () | 6179..6481 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| JL003_RS26935 () | 6478..7104 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| JL003_RS26940 () | 7316..8587 | - | 1272 | WP_000457510.1 | Y-family DNA polymerase | - |
| JL003_RS26945 () | 8587..9024 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| JL003_RS26950 () | 9021..9269 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| JL003_RS26955 () | 9688..10590 | + | 903 | WP_001330417.1 | DUF1281 domain-containing protein | - |
| JL003_RS26960 () | 10587..10899 | + | 313 | Protein_13 | hypothetical protein | - |
| JL003_RS26965 () | 10975..11658 | + | 684 | WP_000086137.1 | DNA methylase | - |
| JL003_RS26970 () | 11659..11880 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| JL003_RS26975 () | 11894..12328 | + | 435 | WP_000274421.1 | DUF1380 family protein | - |
| JL003_RS26980 () | 12373..13143 | + | 771 | WP_001006204.1 | hypothetical protein | - |
| JL003_RS26985 () | 13681..13983 | + | 303 | WP_072105978.1 | antirestriction protein | - |
| JL003_RS26990 () | 14030..14452 | + | 423 | WP_103927856.1 | DUF1380 family protein | - |
| JL003_RS26995 () | 14449..14640 | + | 192 | WP_001493747.1 | hypothetical protein | - |
| JL003_RS27000 () | 14654..15025 | + | 372 | WP_072105516.1 | hypothetical protein | - |
| JL003_RS27005 () | 15409..15936 | + | 528 | WP_103927855.1 | single-stranded DNA-binding protein | - |
| JL003_RS27010 () | 15994..16227 | + | 234 | WP_000006024.1 | DUF905 domain-containing protein | - |
| JL003_RS27015 () | 16286..18244 | + | 1959 | WP_001401579.1 | ParB/RepB/Spo0J family partition protein | - |
| JL003_RS27020 () | 18299..18733 | + | 435 | WP_001578018.1 | conjugation system SOS inhibitor PsiB | - |
| JL003_RS27025 () | 18730..19449 | + | 720 | WP_103927854.1 | plasmid SOS inhibition protein A | - |
| JL003_RS27030 () | 19446..20042 | + | 597 | WP_000977998.1 | hypothetical protein | - |
| JL003_RS27035 () | 20504..21004 | + | 501 | WP_014065718.1 | antirestriction protein ArdA | - |
| JL003_RS27040 () | 21737..22171 | + | 435 | WP_000218862.1 | hypothetical protein | - |
| JL003_RS27045 () | 22263..22529 | + | 267 | WP_001247860.1 | hypothetical protein | - |
| JL003_RS27050 () | 22706..23095 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| JL003_RS27055 () | 23092..23982 | + | 891 | WP_000038332.1 | Recombination-promoting nuclease RpnA | VF |
| JL003_RS27060 () | 23982..24227 | + | 246 | WP_001260884.1 | hypothetical protein | - |
| JL003_RS27065 () | 24258..24509 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| JL003_RS27070 () | 24543..24740 | - | 198 | WP_001161106.1 | hypothetical protein | - |
| JL003_RS27075 () | 25089..25937 | + | 849 | WP_001077014.1 | DUF4942 domain-containing protein | - |
| JL003_RS27080 () | 26023..26358 | - | 336 | WP_000157087.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| JL003_RS27085 () | 26591..26923 | + | 333 | WP_001291058.1 | hypothetical protein | - |
| JL003_RS27090 () | 26935..29646 | + | 2712 | WP_000991381.1 | Protein TraI | Relaxase |
| JL003_RS27095 () | 29714..30145 | + | 432 | WP_072264695.1 | tolA family protein | - |
| JL003_RS27100 () | 30243..30473 | - | 231 | WP_065406859.1 | hypothetical protein | - |
| JL003_RS27105 () | 30940..33243 | - | 2304 | WP_000077664.1 | TraM recognition domain-containing protein | - |
| JL003_RS27110 () | 33224..34348 | - | 1125 | WP_000152386.1 | DsbC family protein | - |
| JL003_RS27115 () | 34345..35661 | - | 1317 | WP_032190748.1 | IncI1-type conjugal transfer protein TrbA | - |
| JL003_RS27120 () | 36746..36997 | + | 252 | WP_001081067.1 | hypothetical protein | - |
| JL003_RS27125 () | 37060..37236 | - | 177 | WP_170975645.1 | hypothetical protein | - |
| JL003_RS27130 () | 37386..37853 | - | 468 | WP_000598962.1 | thermonuclease family protein | - |
| JL003_RS27135 () | 38012..38635 | + | 624 | WP_001155252.1 | DNA-binding protein | - |
| JL003_RS27140 () | 38833..39048 | - | 216 | WP_000266543.1 | hypothetical protein | - |
| JL003_RS27145 () | 39052..39420 | - | 369 | WP_001345852.1 | hypothetical protein | - |
| JL003_RS27150 () | 39432..39623 | - | 192 | WP_000751583.1 | hypothetical protein | - |
| JL003_RS27155 () | 39711..39953 | - | 243 | WP_000650923.1 | hypothetical protein | - |
| JL003_RS27160 () | 40283..40435 | + | 153 | WP_001335079.1 | Hok/Gef family protein | - |
| JL003_RS27165 () | 40573..42159 | - | 1587 | WP_000004564.1 | TnsA endonuclease N-terminal domain-containing protein | - |
| JL003_RS27170 () | 42433..43086 | - | 654 | WP_001401768.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| JL003_RS27175 () | 43174..45339 | - | 2166 | WP_000691808.1 | DotA/TraY family protein | - |
| JL003_RS27180 () | 45414..45983 | - | 570 | WP_000650752.1 | conjugal transfer protein TraX | - |
| JL003_RS27185 () | 45980..47185 | - | 1206 | WP_001189548.1 | conjugal transfer protein TraW | - |
| JL003_RS27190 () | 47143..47763 | - | 621 | WP_000286854.1 | hypothetical protein | - |
| JL003_RS27195 () | 47763..50807 | - | 3045 | WP_103927858.1 | conjugal transfer protein | - |
| JL003_RS27200 () | 51102..51920 | - | 819 | WP_000753550.1 | hypothetical protein | - |
| JL003_RS27205 () | 51835..52086 | - | 252 | WP_001277573.1 | hypothetical protein | - |
| JL003_RS27210 () | 52143..52541 | - | 399 | WP_000088813.1 | hypothetical protein | - |
| JL003_RS27215 () | 52588..53115 | - | 528 | WP_001407937.1 | conjugal transfer protein TraQ | - |
| JL003_RS27220 () | 53115..53828 | - | 714 | WP_000787003.1 | conjugal transfer protein TraP | - |
| JL003_RS27225 () | 53825..55156 | - | 1332 | WP_001288254.1 | conjugal transfer protein TraO | - |
| JL003_RS27230 () | 55160..56134 | - | 975 | WP_000547383.1 | hypothetical protein | VF |
| JL003_RS27235 () | 56145..56840 | - | 696 | WP_001287545.1 | DotI/IcmL family type IV secretion protein | - |
| JL003_RS27240 () | 56852..57202 | - | 351 | WP_001056367.1 | hypothetical protein | - |
| JL003_RS27245 () | 57219..61280 | - | 4062 | WP_000842447.1 | DNA primase | - |
| JL003_RS27250 () | 61344..61634 | - | 291 | WP_000817801.1 | IcmT/TraK family protein | - |
| JL003_RS27255 () | 61631..62779 | - | 1149 | WP_000775210.1 | putative protein YggR | VF |
| JL003_RS27260 () | 62763..63599 | - | 837 | WP_000745049.1 | hypothetical protein | VF |
| JL003_RS27265 () | 63596..64054 | - | 459 | WP_001170111.1 | DotD/TraH family lipoprotein | - |
| JL003_RS27270 () | 64158..64862 | - | 705 | Protein_75 | conjugal transfer protein TraF | - |
| JL003_RS27275 () | 64949..65383 | + | 435 | WP_001309734.1 | IS66 family transposase ISEc43 | Transposase |
| JL003_RS27280 () | 65380..65730 | + | 351 | WP_000624688.1 | IS66 family transposase ISEc47 | Transposase |
| JL003_RS27285 () | 65761..67373 | + | 1613 | Protein_78 | IS66 family transposase ISEc43 | Transposase |
| JL003_RS27290 () | 67396..67908 | - | 513 | Protein_79 | conjugal transfer protein TraF | - |
| JL003_RS27295 () | 68010..68831 | - | 822 | WP_000845373.1 | hypothetical protein | - |
| JL003_RS27300 () | 69304..70665 | - | 1362 | WP_001168171.1 | hypothetical protein | VF |
| JL003_RS27305 () | 70683..71309 | - | 627 | WP_000939244.1 | prepilin peptidase | - |
| JL003_RS27310 () | 71325..71810 | - | 486 | WP_001080767.1 | hypothetical protein | VF |
| JL003_RS27315 () | 71855..72391 | - | 537 | WP_000111534.1 | hypothetical protein | VF |
| JL003_RS27320 () | 72453..73547 | - | 1095 | WP_000697158.1 | type II secretion system F family protein | - |
| JL003_RS27325 () | 73549..75057 | - | 1509 | WP_000880807.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| JL003_RS27330 () | 75160..75618 | - | 459 | WP_000095885.1 | hypothetical protein | VF |
| JL003_RS27335 () | 75608..76903 | - | 1296 | WP_000129883.1 | type 4b pilus protein PilO2 | - |
| JL003_RS27340 () | 76924..78543 | - | 1620 | WP_001035562.1 | Outer membrane lipoprotein BfpB | VF |
| JL003_RS27345 () | 78575..79012 | - | 438 | WP_000539952.1 | hypothetical protein | VF |
| JL003_RS27350 () | 79016..80086 | - | 1071 | WP_000730428.1 | hypothetical protein | VF |
| JL003_RS27355 () | 80313..80648 | - | 336 | WP_001335624.1 | hypothetical protein | - |
| JL003_RS27360 () | 80764..81081 | - | 318 | WP_001330559.1 | PilI type IV pilus biogenesis protein | - |
| JL003_RS27365 () | 81087..82781 | - | 1695 | WP_000482665.1 | flotillin family protein | - |
| JL003_RS27370 () | 82808..83428 | - | 621 | WP_000176497.1 | DUF1449 family protein | - |
| JL003_RS27375 () | 83695..84357 | - | 663 | WP_000154141.1 | hypothetical protein | - |
| JL003_RS27380 () | 84498..85139 | - | 642 | WP_000335849.1 | transcription termination factor NusG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|