MGE detailed information
MGE type: Genomic_island MGE length: 40951 bp
Accession: NZ_AP018677 Location: 3262140..3303090 Organism: Vibrio cholerae strain V060002 Replicon: chromosome
Accession: NZ_AP018677 Location: 3262140..3303090 Organism: Vibrio cholerae strain V060002 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V060002_RS15625 () | 3257405..3261967 | - | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| V060002_RS15630 () | 3262140..3262787 | + | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| V060002_RS15635 () | 3262790..3263698 | - | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| V060002_RS15640 () | 3263707..3264180 | - | 474 | WP_000287237.1 | RDD family protein | - |
| V060002_RS15645 () | 3264196..3264966 | - | 771 | WP_001880633.1 | accessory colonization factor AcfC | - |
| V060002_RS15650 () | 3264972..3266852 | - | 1881 | WP_000672505.1 | methyl-accepting chemotaxis protein AcfB | - |
| V060002_RS15655 () | 3266859..3267620 | - | 762 | WP_000456980.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| V060002_RS15660 () | 3267620..3268450 | - | 831 | WP_000579582.1 | pilus/toxin transcriptional regulator ToxT | - |
| V060002_RS15665 () | 3268657..3269673 | - | 1017 | WP_001269573.1 | colonization factor TcpF | - |
| V060002_RS15670 () | 3269683..3270705 | - | 1023 | WP_000691946.1 | toxin-coregulated pilus assembly protein TcpE | - |
| V060002_RS15675 () | 3270680..3272191 | - | 1512 | WP_000020697.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| V060002_RS15680 () | 3272181..3272639 | - | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| V060002_RS15685 () | 3272655..3273491 | - | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| V060002_RS15690 () | 3273479..3273934 | - | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| V060002_RS15695 () | 3273927..3275396 | - | 1470 | WP_000750979.1 | toxin-coregulated pilus secretin TcpC | - |
| V060002_RS15700 () | 3275399..3275851 | - | 453 | WP_000742753.1 | toxin-coregulated pilus protein TcpQ | - |
| V060002_RS15705 () | 3275851..3277143 | - | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| V060002_RS15710 () | 3277223..3277897 | - | 675 | WP_001176374.1 | toxin-coregulated pilus major pilin TcpA | - |
| V060002_RS15715 () | 3278440..3278850 | - | 411 | WP_000549073.1 | toxin-coregulated pilus protein TcpH | - |
| V060002_RS15720 () | 3278835..3279500 | - | 666 | WP_000542596.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| V060002_RS15725 () | 3279941..3281803 | + | 1863 | WP_000591844.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| V060002_RS15730 () | 3282079..3282573 | - | 495 | WP_000218964.1 | thiol peroxidase | - |
| V060002_RS15735 () | 3282683..3283621 | - | 939 | WP_001232137.1 | hypothetical protein | - |
| V060002_RS15740 () | 3283618..3288219 | - | 4602 | WP_000482254.1 | membrane protein | - |
| V060002_RS15745 () | 3288332..3291373 | - | 3042 | WP_001880619.1 | fibronectin type III domain-containing protein | - |
| V060002_RS15750 () | 3291553..3293073 | + | 1521 | WP_000640055.1 | aldehyde dehydrogenase | - |
| V060002_RS15755 () | 3293415..3294095 | + | 681 | Protein_2933 | IS5 family transposase | - |
| V060002_RS15760 () | 3294121..3295098 | - | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| V060002_RS15770 () | 3295702..3297063 | + | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| V060002_RS15775 () | 3297060..3297527 | + | 468 | WP_000804849.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| V060002_RS15780 () | 3297955..3298533 | + | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| V060002_RS15785 () | 3298537..3301473 | + | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| V060002_RS15790 () | 3301543..3302247 | + | 705 | WP_001880605.1 | NERD domain-containing protein | - |
| V060002_RS15795 () | 3302581..3303090 | - | 510 | WP_001077909.1 | hypothetical protein | - |
| V060002_RS15800 () | 3303288..3304967 | - | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| V060002_RS15810 () | 3305190..3305873 | + | 684 | WP_000841479.1 | MFS transporter | - |
| V060002_RS15815 () | 3305941..3307557 | - | 1617 | WP_000620446.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|