MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 184472 bp
Accession: NZ_AP017632 Location: 3421..187892 Organism: Helicobacter pylori strain ATCC 43504 Replicon: chromosome
Accession: NZ_AP017632 Location: 3421..187892 Organism: Helicobacter pylori strain ATCC 43504 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPATCC43504_RS00005 () | 1..1368 | + | 1368 | WP_108169399.1 | chromosomal replication initiator protein DnaA | - |
| HPATCC43504_RS00010 () | 1597..3036 | + | 1440 | WP_108169400.1 | competence protein | - |
| HPATCC43504_RS00020 () | 3216..3968 | + | 753 | WP_108169401.1 | exodeoxyribonuclease III | - |
| HPATCC43504_RS00025 () | 3965..4600 | - | 636 | WP_108169402.1 | outer membrane protein | - |
| HPATCC43504_RS00030 () | 4604..4951 | - | 348 | WP_108169403.1 | hypothetical protein | - |
| HPATCC43504_RS00035 () | 5033..6904 | + | 1872 | WP_108169404.1 | ATP-dependent DNA helicase RecG | - |
| HPATCC43504_RS00040 () | 6948..8318 | + | 1371 | WP_108169405.1 | site-specific DNA-methyltransferase | - |
| HPATCC43504_RS00045 () | 8296..8910 | + | 615 | WP_108169406.1 | site-specific DNA-methyltransferase | - |
| HPATCC43504_RS00050 () | 8913..11821 | + | 2909 | Protein_8 | type III restriction-modification system endonuclease | - |
| HPATCC43504_RS00055 () | 12024..15785 | + | 3762 | WP_108169408.1 | class I SAM-dependent DNA methyltransferase | - |
| HPATCC43504_RS00060 () | 16591..17028 | + | 438 | WP_108169409.1 | SocA family protein | - |
| HPATCC43504_RS00065 () | 17018..17783 | + | 766 | Protein_11 | hypothetical protein | - |
| HPATCC43504_RS00070 () | 18016..19203 | - | 1188 | WP_108169410.1 | transcription termination/antitermination protein NusA | - |
| HPATCC43504_RS00075 () | 19305..20465 | - | 1161 | WP_108169411.1 | L-seryl-tRNA(Sec) selenium transferase | - |
| HPATCC43504_RS00080 () | 20693..23284 | - | 2592 | WP_108169412.1 | TonB-dependent receptor | - |
| HPATCC43504_RS00085 () | 23438..23764 | - | 327 | WP_108169413.1 | iron-regulated protein | - |
| HPATCC43504_RS00090 () | 23748..24101 | - | 354 | WP_108169414.1 | FolB domain-containing protein | - |
| HPATCC43504_RS00095 () | 24098..24886 | - | 789 | WP_108169415.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| HPATCC43504_RS00100 () | 24866..26242 | + | 1377 | WP_108169416.1 | cytochrome c oxidase accessory protein CcoG | - |
| HPATCC43504_RS00105 () | 26251..27450 | - | 1200 | WP_108169417.1 | saccharopine dehydrogenase family protein | - |
| HPATCC43504_RS00110 () | 27536..28762 | + | 1227 | WP_108169418.1 | sodium/glutamate symporter | - |
| HPATCC43504_RS00115 () | 28759..29793 | + | 1035 | WP_108169419.1 | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase | - |
| HPATCC43504_RS00120 () | 29775..30491 | + | 717 | WP_108169420.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| HPATCC43504_RS00125 () | 30501..32867 | + | 2367 | WP_108169421.1 | heavy metal translocating P-type ATPase | - |
| HPATCC43504_RS00130 () | 32864..33301 | - | 438 | WP_108169422.1 | CopD family copper resistance protein | - |
| HPATCC43504_RS00135 () | 33483..34646 | + | 1164 | WP_162296900.1 | hypothetical protein | VF |
| HPATCC43504_RS00140 () | 34709..36325 | - | 1617 | Protein_26 | AlwI family type II restriction endonuclease | - |
| HPATCC43504_RS00145 () | 36332..37231 | - | 900 | WP_108169424.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| HPATCC43504_RS00150 () | 37228..38229 | - | 1002 | WP_108169425.1 | DNA adenine methylase | - |
| HPATCC43504_RS00155 () | 38286..39353 | - | 1068 | WP_108169426.1 | LptF/LptG family permease | - |
| HPATCC43504_RS00160 () | 39408..39968 | - | 561 | WP_108169427.1 | aminoacyl-tRNA hydrolase | - |
| HPATCC43504_RS00165 () | 39978..40514 | - | 537 | WP_000889333.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
| HPATCC43504_RS00170 () | 40569..41519 | - | 951 | WP_108169428.1 | transaldolase | - |
| HPATCC43504_RS00175 () | 41523..42866 | - | 1344 | WP_108169429.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase | - |
| HPATCC43504_RS00180 () | 42870..43481 | - | 612 | WP_108169430.1 | histidine kinase | - |
| HPATCC43504_RS00185 () | 43493..43762 | - | 270 | WP_000569296.1 | NifU family protein | - |
| HPATCC43504_RS00190 () | 43903..45504 | + | 1602 | WP_108169431.1 | inorganic phosphate transporter | - |
| HPATCC43504_RS00195 () | 45607..46944 | + | 1338 | WP_108169432.1 | hemolysin family protein | - |
| HPATCC43504_RS00200 () | 46960..48492 | + | 1533 | WP_108169433.1 | TolC family protein | - |
| HPATCC43504_RS00205 () | 48504..49493 | + | 990 | WP_108169434.1 | efflux RND transporter periplasmic adaptor subunit | - |
| HPATCC43504_RS00210 () | 49505..50602 | + | 1098 | WP_108169435.1 | ABC transporter permease | - |
| HPATCC43504_RS00215 () | 50599..51729 | + | 1131 | WP_108169436.1 | ABC transporter permease | - |
| HPATCC43504_RS00220 () | 51716..52288 | + | 573 | WP_108169437.1 | YigZ family protein | - |
| HPATCC43504_RS00225 () | 52299..52745 | + | 447 | WP_000506456.1 | protoporphyrinogen oxidase HemJ | - |
| HPATCC43504_RS00230 () | 52772..53503 | + | 732 | WP_108169438.1 | bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE | - |
| HPATCC43504_RS00235 () | 53513..53773 | + | 261 | WP_050844145.1 | exodeoxyribonuclease VII small subunit | - |
| HPATCC43504_RS00240 () | 53777..54574 | + | 798 | WP_108169439.1 | carbon-nitrogen hydrolase family protein | - |
| HPATCC43504_RS00245 () | 54575..55822 | + | 1248 | WP_108169440.1 | serine--tRNA ligase | - |
| HPATCC43504_RS00250 () | 55832..58366 | + | 2535 | WP_108169441.1 | anaphase-promoting protein | - |
| HPATCC43504_RS00255 () | 58366..60411 | + | 2046 | WP_162296836.1 | DNA helicase UvrD | - |
| HPATCC43504_RS00260 () | 60408..61064 | + | 657 | WP_108169443.1 | hypothetical protein | VF |
| HPATCC43504_RS00265 () | 61074..61637 | + | 564 | WP_000780122.1 | UbiX family flavin prenyltransferase | - |
| HPATCC43504_RS00270 () | 61637..62110 | + | 474 | WP_108169444.1 | Phosphopantetheine adenylyltransferase | VF |
| HPATCC43504_RS00275 () | 62112..62687 | + | 576 | WP_108169445.1 | dTMP kinase | - |
| HPATCC43504_RS00280 () | 62675..63250 | + | 576 | WP_108169446.1 | ComF family protein | - |
| HPATCC43504_RS00285 () | 63283..65322 | + | 2040 | WP_108169963.1 | N-6 DNA methylase | - |
| HPATCC43504_RS00290 () | 65319..66512 | + | 1194 | WP_108169447.1 | restriction endonuclease subunit S | - |
| HPATCC43504_RS00295 () | 66578..69253 | + | 2676 | WP_108169448.1 | DNA polymerase I | - |
| HPATCC43504_RS00300 () | 69368..70114 | + | 747 | WP_108169449.1 | hypothetical protein | VF |
| HPATCC43504_RS00305 () | 70162..71184 | + | 1023 | WP_108169450.1 | branched-chain-amino-acid transaminase | - |
| HPATCC43504_RS00310 () | 71189..71884 | - | 696 | WP_108169451.1 | outer membrane protein | - |
| HPATCC43504_RS00315 () | 72018..73151 | + | 1134 | WP_108169452.1 | ABC transporter permease | - |
| HPATCC43504_RS00320 () | 73151..73936 | + | 786 | WP_101025040.1 | Arginine transport ATP-binding protein ArtM | VF |
| HPATCC43504_RS00325 () | 73921..74736 | + | 816 | WP_108169453.1 | MCE family protein | - |
| HPATCC43504_RS00330 () | 74739..75416 | + | 678 | WP_108169454.1 | hypothetical protein | - |
| HPATCC43504_RS00335 () | 75435..76022 | + | 588 | WP_162296837.1 | META domain-containing protein | - |
| HPATCC43504_RS00340 () | 76203..77255 | - | 1053 | WP_108169455.1 | cytochrome-c peroxidase | - |
| HPATCC43504_RS00345 () | 77403..81038 | + | 3636 | WP_108169456.1 | DNA polymerase III subunit alpha | - |
| HPATCC43504_RS00350 () | 81020..81808 | + | 789 | WP_108169457.1 | rRNA pseudouridine synthase | - |
| HPATCC43504_RS00355 () | 81863..82177 | + | 315 | WP_000895147.1 | thioredoxin family protein | - |
| HPATCC43504_RS00360 () | 82540..83172 | + | 633 | WP_000243401.1 | penicillin-binding protein activator LpoB | - |
| HPATCC43504_RS00365 () | 83196..83723 | + | 528 | WP_000795968.1 | LPP20 family lipoprotein | - |
| HPATCC43504_RS00370 () | 83731..84072 | + | 342 | WP_000824768.1 | hypothetical protein | - |
| HPATCC43504_RS00375 () | 84082..84993 | + | 912 | WP_039088095.1 | LPP20 family lipoprotein | - |
| HPATCC43504_RS00380 () | 85354..86043 | - | 690 | WP_108169459.1 | restriction endonuclease subunit S | - |
| HPATCC43504_RS00385 () | 86870..88645 | + | 1776 | WP_108169460.1 | relaxase/mobilization nuclease domain-containing protein | - |
| HPATCC43504_RS00390 () | 88764..88904 | + | 141 | WP_157956328.1 | hypothetical protein | - |
| HPATCC43504_RS00395 () | 90059..91126 | + | 1068 | WP_001120380.1 | Tyrosine recombinase XerH ; Integrase | Integrase |
| HPATCC43504_RS00400 () | 91443..92246 | - | 804 | WP_108169461.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| HPATCC43504_RS00405 () | 92218..92469 | - | 252 | WP_000006537.1 | hypothetical protein | - |
| HPATCC43504_RS00410 () | 92601..93281 | - | 681 | WP_108169462.1 | CAAX protease | - |
| HPATCC43504_RS00415 () | 93502..94531 | + | 1030 | Protein_81 | hypothetical protein | - |
| HPATCC43504_RS00420 () | 94536..95165 | - | 630 | WP_108169463.1 | hypothetical protein | - |
| HPATCC43504_RS00425 () | 95182..97230 | - | 2049 | WP_108169464.1 | hypothetical protein | - |
| HPATCC43504_RS00430 () | 97230..98282 | - | 1053 | WP_108169465.1 | DUF1738 domain-containing protein | - |
| HPATCC43504_RS00435 () | 98283..98447 | - | 165 | WP_000189763.1 | hypothetical protein | - |
| HPATCC43504_RS00440 () | 99085..99753 | + | 669 | WP_108169466.1 | ParA family protein | - |
| HPATCC43504_RS00445 () | 99800..100177 | + | 378 | WP_108169467.1 | hypothetical protein | - |
| HPATCC43504_RS00450 () | 100155..100820 | + | 666 | WP_108169468.1 | hypothetical protein | - |
| HPATCC43504_RS00455 () | 100893..101684 | - | 792 | WP_108169469.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| HPATCC43504_RS00460 () | 101654..102124 | - | 471 | WP_000965795.1 | hypothetical protein | - |
| HPATCC43504_RS00465 () | 102179..104240 | - | 2062 | Protein_91 | type IA DNA topoisomerase | - |
| HPATCC43504_RS00470 () | 104253..104654 | - | 402 | WP_000420189.1 | hypothetical protein | - |
| HPATCC43504_RS00475 () | 104705..104956 | - | 252 | WP_108169470.1 | hypothetical protein | - |
| HPATCC43504_RS00480 () | 104953..105162 | - | 210 | WP_000462384.1 | hypothetical protein | - |
| HPATCC43504_RS00485 () | 105283..113796 | - | 8514 | WP_108169471.1 | Eco57I restriction-modification methylase domain-containing protein | - |
| HPATCC43504_RS00490 () | 113951..114988 | + | 1038 | WP_108169472.1 | hypothetical protein | - |
| HPATCC43504_RS00495 () | 114989..116383 | + | 1395 | Protein_97 | hypothetical protein | - |
| HPATCC43504_RS00500 () | 116403..117428 | + | 1026 | Protein_98 | competence protein | - |
| HPATCC43504_RS00505 () | 117516..117962 | - | 447 | WP_162296838.1 | IS200-IS605 family transposase IS605 | Transposase |
| HPATCC43504_RS00510 () | 118014..119297 | + | 1284 | WP_108169473.1 | IS200-IS605 family transposase IS605 | Transposase |
| HPATCC43504_RS00515 () | 119314..120444 | + | 1131 | Protein_101 | Conjugal transfer protein TraG | VF |
| HPATCC43504_RS00520 () | 120704..121309 | + | 606 | Protein_102 | Protein VirD4 | VF |
| HPATCC43504_RS00525 () | 121583..121864 | - | 282 | WP_000921939.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| HPATCC43504_RS00530 () | 121857..122171 | - | 315 | WP_108169476.1 | hypothetical protein | Antitoxin Detail |
| HPATCC43504_RS00535 () | 122475..124388 | + | 1914 | WP_108169477.1 | relaxase/mobilization nuclease domain-containing protein | - |
| HPATCC43504_RS00540 () | 124413..125597 | - | 1185 | WP_108169478.1 | hypothetical protein | - |
| HPATCC43504_RS00545 () | 125629..125913 | - | 285 | WP_000394639.1 | hypothetical protein ; Integrase | Integrase |
| HPATCC43504_RS00550 () | 125995..126651 | - | 657 | WP_108169479.1 | ParA family protein | - |
| HPATCC43504_RS00555 () | 126918..130616 | - | 3699 | Protein_109 | hypothetical protein | VF |
| HPATCC43504_RS00560 () | 130638..131212 | - | 575 | Protein_110 | hypothetical protein | VF |
| HPATCC43504_RS00565 () | 131212..131448 | - | 237 | WP_001168532.1 | hypothetical protein | - |
| HPATCC43504_RS00570 () | 131460..131723 | - | 264 | WP_001177716.1 | hypothetical protein | - |
| HPATCC43504_RS00575 () | 131735..132019 | - | 285 | WP_064432016.1 | TrbC/VirB2 family protein | - |
| HPATCC43504_RS00580 () | 132016..132495 | - | 480 | WP_108169480.1 | hypothetical protein | - |
| HPATCC43504_RS00585 () | 132488..132703 | - | 216 | WP_108169481.1 | hypothetical protein | - |
| HPATCC43504_RS00590 () | 132706..133494 | - | 789 | WP_172953003.1 | integrase | - |
| HPATCC43504_RS00595 () | 133472..134113 | - | 642 | WP_108169483.1 | restriction endonuclease subunit S | - |
| HPATCC43504_RS00600 () | 134101..134877 | - | 777 | WP_108169484.1 | Abi family protein | - |
| HPATCC43504_RS00605 () | 134964..137429 | - | 2466 | WP_108169485.1 | type I restriction-modification system subunit M | - |
| HPATCC43504_RS00610 () | 137499..140474 | + | 2976 | WP_162296902.1 | type I restriction endonuclease subunit R | - |
| HPATCC43504_RS00615 () | 140474..141181 | + | 708 | WP_108169487.1 | M48 family metallopeptidase | - |
| HPATCC43504_RS00620 () | 141280..143806 | - | 2527 | Protein_122 | TonB-dependent receptor family protein | - |
| HPATCC43504_RS00625 () | 144152..145120 | - | 969 | WP_108169488.1 | arginase | - |
| HPATCC43504_RS00630 () | 145322..146464 | + | 1143 | WP_108169489.1 | alanine dehydrogenase | - |
| HPATCC43504_RS00635 () | 146584..148274 | + | 1691 | Protein_125 | DUF262 domain-containing protein | - |
| HPATCC43504_RS00640 () | 148285..149013 | - | 729 | WP_108169490.1 | hypothetical protein | VF |
| HPATCC43504_RS00645 () | 149199..150052 | + | 854 | Protein_127 | NAD(+)/NADH kinase | - |
| HPATCC43504_RS00650 () | 150067..151641 | + | 1575 | WP_108169491.1 | DNA recombination protein RecN | - |
| HPATCC43504_RS00655 () | 151638..152945 | + | 1308 | WP_108169492.1 | NFACT family protein | - |
| HPATCC43504_RS00660 () | 152964..153260 | + | 297 | WP_000539103.1 | hypothetical protein | - |
| HPATCC43504_RS00665 () | 153398..154375 | + | 978 | WP_108169493.1 | Putative beta-lactamase HcpC | VF |
| HPATCC43504_RS00670 () | 154414..155277 | - | 864 | WP_108169494.1 | 3'-5' exonuclease | - |
| HPATCC43504_RS00675 () | 155255..155908 | - | 654 | WP_108169495.1 | Ribulose-phosphate 3-epimerase | VF |
| HPATCC43504_RS00680 () | 155979..156851 | + | 873 | WP_108169496.1 | class 1 fructose-bisphosphatase | - |
| HPATCC43504_RS00685 () | 156851..157054 | + | 204 | WP_025276491.1 | hypothetical protein | - |
| HPATCC43504_RS00690 () | 157222..158079 | - | 858 | WP_108169497.1 | cytochrome c1 | - |
| HPATCC43504_RS00695 () | 158076..159314 | - | 1239 | WP_108169498.1 | cytochrome bc complex cytochrome b subunit | - |
| HPATCC43504_RS00700 () | 159325..159828 | - | 504 | WP_000763638.1 | ubiquinol-cytochrome c reductase iron-sulfur subunit | - |
| HPATCC43504_RS00705 () | 159953..162952 | - | 3000 | WP_108169499.1 | transcription-repair coupling factor | - |
| HPATCC43504_RS00710 () | 162956..163366 | - | 411 | WP_000963936.1 | polymer-forming cytoskeletal protein | - |
| HPATCC43504_RS00715 () | 163285..164220 | - | 936 | WP_108169500.1 | Murein DD-endopeptidase MepM | VF |
| HPATCC43504_RS00720 () | 164229..165155 | - | 927 | WP_108169501.1 | M23 family metallopeptidase | - |
| HPATCC43504_RS00725 () | 165155..166339 | - | 1185 | WP_108169502.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| HPATCC43504_RS00730 () | 166329..166874 | - | 546 | WP_130624931.1 | LptE family protein | - |
| HPATCC43504_RS00735 () | 166837..169257 | - | 2421 | WP_108169504.1 | leucine--tRNA ligase | - |
| HPATCC43504_RS00740 () | 169268..169606 | - | 339 | WP_000383778.1 | hypothetical protein | - |
| HPATCC43504_RS00745 () | 169616..170587 | - | 972 | WP_108169505.1 | protein translocase subunit SecF | - |
| HPATCC43504_RS00750 () | 170596..172173 | - | 1578 | WP_108169506.1 | protein translocase subunit SecD | - |
| HPATCC43504_RS00755 () | 172170..172553 | - | 384 | WP_097552037.1 | preprotein translocase subunit YajC | - |
| HPATCC43504_RS00760 () | 172601..173917 | - | 1317 | WP_108169507.1 | sodium/proton antiporter NhaA | - |
| HPATCC43504_RS00765 () | 173941..176808 | - | 2868 | WP_108169508.1 | RecB-like helicase | - |
| HPATCC43504_RS00770 () | 177061..177855 | + | 795 | WP_000258276.1 | 30S ribosomal protein S2 | - |
| HPATCC43504_RS00775 () | 177855..178922 | + | 1068 | WP_108169509.1 | elongation factor Ts | - |
| HPATCC43504_RS00780 () | 179365..181212 | - | 1848 | WP_108169510.1 | penicillin-binding protein 2 | - |
| HPATCC43504_RS00785 () | 181219..181344 | - | 126 | WP_108169511.1 | transcriptional regulator | - |
| HPATCC43504_RS00790 () | 181368..181697 | - | 330 | WP_001147916.1 | Flagellar hook-basal body complex protein FliE | VF |
| HPATCC43504_RS00795 () | 181824..182309 | - | 486 | WP_000480077.1 | Flagellar basal-body rod protein FlgC | VF |
| HPATCC43504_RS00800 () | 182322..182778 | - | 457 | Protein_158 | Flagellar basal body rod protein FlgB | VF |
| HPATCC43504_RS00805 () | 182950..184116 | + | 1167 | WP_108169512.1 | FtsW/RodA/SpoVE family cell cycle protein | - |
| HPATCC43504_RS00810 () | 184140..185141 | - | 1002 | WP_108169513.1 | ABC transporter substrate-binding protein | - |
| HPATCC43504_RS00815 () | 185381..185977 | + | 597 | WP_000961643.1 | peroxiredoxin | - |
| HPATCC43504_RS00820 () | 186124..186939 | + | 816 | WP_108169967.1 | D-methionine-binding lipoprotein MetQ | VF |
| HPATCC43504_RS00825 () | 187426..189192 | - | 1767 | WP_108169514.1 | penicillin-binding protein 2 | - |
| HPATCC43504_RS00830 () | 189173..189532 | - | 360 | WP_130624932.1 | hypothetical protein | - |
| HPATCC43504_RS00835 () | 189628..190254 | - | 627 | WP_108169516.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| HPATCC43504_RS00840 () | 190251..190808 | - | 558 | WP_108169517.1 | lipopolysaccharide transport periplasmic protein LptA | - |
| HPATCC43504_RS00845 () | 190808..191401 | - | 594 | WP_108169518.1 | hypothetical protein | - |
| HPATCC43504_RS00850 () | 191376..191870 | - | 495 | WP_108169519.1 | HAD family hydrolase | - |
| HPATCC43504_RS00855 () | 191867..192811 | - | 945 | WP_108169520.1 | septal ring lytic transglycosylase RlpA family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|