MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 86908 bp
Accession: NC_017718 Location: 1..86908 Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 Replicon: plasmid pCol1B9_SL1344
Accession: NC_017718 Location: 1..86908 Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 Replicon: plasmid pCol1B9_SL1344
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SL1344_RS24205 () | 455..1486 | + | 1032 | WP_000907875.1 | replication initiation protein | - |
| SL1344_RS24210 () | 2395..2664 | + | 270 | WP_000079928.1 | hypothetical protein | Antitoxin Detail |
| SL1344_RS24215 () | 2661..2942 | + | 282 | WP_000969996.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| SL1344_RS24220 () | 2982..3830 | + | 849 | WP_001057996.1 | 3'-5' exonuclease | - |
| SL1344_RS24225 () | 3947..4420 | + | 474 | WP_001334658.1 | hypothetical protein | - |
| SL1344_RS24230 () | 4897..5163 | - | 267 | WP_000627831.1 | hypothetical protein | - |
| SL1344_RS24235 () | 5163..5657 | - | 495 | WP_001442119.1 | hypothetical protein | - |
| SL1344_RS24240 () | 5713..6315 | - | 603 | WP_000517689.1 | hypothetical protein | - |
| SL1344_RS24245 () | 6669..8015 | + | 1347 | WP_001132021.1 | hypothetical protein | - |
| SL1344_RS24250 () | 8294..10174 | + | 1881 | WP_001283356.1 | colicin | - |
| SL1344_RS24255 () | 10192..10539 | - | 348 | WP_000762580.1 | hypothetical protein | - |
| SL1344_RS24260 () | 10658..11005 | + | 348 | WP_000142425.1 | hypothetical protein | - |
| SL1344_RS24265 () | 11023..11613 | - | 591 | WP_000194563.1 | hypothetical protein | - |
| SL1344_RS24270 () | 11610..11870 | - | 261 | WP_000343102.1 | hypothetical protein | - |
| SL1344_RS24275 () | 12439..12852 | + | 414 | WP_000465034.1 | hypothetical protein | - |
| SL1344_RS24280 () | 12854..13639 | + | 786 | WP_001164192.1 | site-specific integrase | - |
| SL1344_RS24285 () | 14223..14855 | + | 633 | WP_000312331.1 | ParA family protein | - |
| SL1344_RS27545 () | 14855..15229 | + | 375 | WP_000752652.1 | hypothetical protein | - |
| SL1344_RS24295 () | 15468..16442 | + | 975 | WP_001217836.1 | hypothetical protein | - |
| SL1344_RS24300 () | 16446..16838 | + | 393 | WP_000272884.1 | plasmid partitioning/stability family protein | - |
| SL1344_RS24310 () | 17519..18421 | + | 903 | WP_001348079.1 | DUF1281 domain-containing protein | - |
| SL1344_RS27325 () | 18418..18730 | + | 313 | Protein_21 | hypothetical protein | - |
| SL1344_RS24315 () | 18806..19489 | + | 684 | WP_000086147.1 | DNA methylase | - |
| SL1344_RS24320 () | 19490..19711 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| SL1344_RS24325 () | 19725..20159 | + | 435 | WP_000274500.1 | DUF1380 family protein | - |
| SL1344_RS27590 () | 20205..20981 | + | 777 | WP_001005043.1 | hypothetical protein | - |
| SL1344_RS24340 () | 21399..21824 | + | 426 | WP_001198939.1 | antirestriction protein | - |
| SL1344_RS24345 () | 21871..22293 | + | 423 | WP_000271705.1 | DUF1380 family protein | - |
| SL1344_RS24350 () | 22290..22481 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| SL1344_RS26915 () | 22552..22866 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| SL1344_RS24360 () | 23250..23777 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| SL1344_RS24365 () | 23835..24068 | + | 234 | WP_000006024.1 | DUF905 domain-containing protein | - |
| SL1344_RS24370 () | 24127..26085 | + | 1959 | WP_001145480.1 | ParB/RepB/Spo0J family partition protein | - |
| SL1344_RS24375 () | 26140..26574 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| SL1344_RS24380 () | 26571..27290 | + | 720 | WP_001276263.1 | plasmid SOS inhibition protein A | - |
| SL1344_RS24385 () | 27287..27883 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| SL1344_RS24395 () | 28346..28846 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| SL1344_RS24400 () | 29575..30009 | + | 435 | WP_000218864.1 | hypothetical protein | - |
| SL1344_RS26415 () | 30103..30369 | + | 267 | WP_014653259.1 | hypothetical protein | - |
| SL1344_RS24410 () | 30434..31360 | + | 927 | WP_000038402.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| SL1344_RS24415 () | 31360..31605 | + | 246 | WP_001260884.1 | hypothetical protein | - |
| SL1344_RS24420 () | 31636..31887 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| SL1344_RS27550 () | 31921..32118 | - | 198 | WP_001161115.1 | hypothetical protein | - |
| SL1344_RS24425 () | 32467..33315 | + | 849 | WP_001077019.1 | DUF4942 domain-containing protein | - |
| SL1344_RS24430 () | 33401..33736 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| SL1344_RS24435 () | 33969..34301 | + | 333 | WP_001281051.1 | hypothetical protein | - |
| SL1344_RS24440 () | 34312..37011 | + | 2700 | WP_001354015.1 | IncI1-type relaxase NikB | - |
| SL1344_RS24445 () | 37048..39339 | - | 2292 | WP_014653261.1 | TrbC | - |
| SL1344_RS24450 () | 39332..40402 | - | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| SL1344_RS24455 () | 40421..41629 | - | 1209 | WP_000121274.1 | IncI1-type conjugal transfer protein TrbA | - |
| SL1344_RS24460 () | 41921..42073 | + | 153 | WP_001331364.1 | Hok/Gef family protein | - |
| SL1344_RS24465 () | 42145..42396 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| SL1344_RS24470 () | 42696..42992 | + | 297 | WP_001275298.1 | hypothetical protein | - |
| SL1344_RS27555 () | 43057..43233 | - | 177 | WP_001054904.1 | hypothetical protein | - |
| SL1344_RS24475 () | 43625..43834 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| SL1344_RS24480 () | 43906..44568 | - | 663 | WP_000653334.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| SL1344_RS24485 () | 44633..46795 | - | 2163 | WP_000698351.1 | DotA/TraY family protein | - |
| SL1344_RS24490 () | 46892..47476 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| SL1344_RS24495 () | 47505..48707 | - | 1203 | WP_001189161.1 | IncI1-type conjugal transfer protein TraW | - |
| SL1344_RS26425 () | 48674..49288 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| SL1344_RS24500 () | 49288..52332 | - | 3045 | WP_001024779.1 | IncI1-type conjugal transfer protein TraU | - |
| SL1344_RS24505 () | 52422..53222 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| SL1344_RS24510 () | 53206..53394 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| SL1344_RS24515 () | 53458..53862 | - | 405 | WP_000086957.1 | IncI1-type conjugal transfer protein TraR | - |
| SL1344_RS24520 () | 53913..54440 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| SL1344_RS24525 () | 54440..55144 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| SL1344_RS24530 () | 55144..56433 | - | 1290 | WP_001272005.1 | conjugal transfer protein TraO | - |
| SL1344_RS24535 () | 56436..57419 | - | 984 | WP_001191877.1 | IncI1-type conjugal transfer protein TraN | - |
| SL1344_RS24540 () | 57430..58122 | - | 693 | WP_000138548.1 | DotI/IcmL family type IV secretion protein | - |
| SL1344_RS24545 () | 58119..58466 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| SL1344_RS24550 () | 58484..62251 | - | 3768 | WP_001141529.1 | DNA primase | - |
| SL1344_RS24555 () | 62341..62892 | - | 552 | WP_000014583.1 | phospholipase D family protein | - |
| SL1344_RS26430 () | 62907..63197 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| SL1344_RS24560 () | 63194..64342 | - | 1149 | WP_001024972.1 | plasmid transfer ATPase TraJ | - |
| SL1344_RS24565 () | 64339..65157 | - | 819 | WP_000646098.1 | IncI1-type conjugal transfer lipoprotein TraI | - |
| SL1344_RS24570 () | 65154..65612 | - | 459 | WP_001079808.1 | IncI1-type conjugal transfer lipoprotein TraH | - |
| SL1344_RS24575 () | 66007..66591 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| SL1344_RS24580 () | 66651..67853 | - | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| SL1344_RS24585 () | 67938..68762 | - | 825 | WP_001238939.1 | hypothetical protein | - |
| SL1344_RS24590 () | 68913..70067 | - | 1155 | WP_001139957.1 | integrase | - |
| SL1344_RS27340 () | 70758..71006 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| SL1344_RS24600 () | 71003..72295 | - | 1293 | WP_001417545.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| SL1344_RS26440 () | 72295..72951 | - | 657 | WP_001193553.1 | prepilin peptidase | - |
| SL1344_RS24605 () | 72936..73496 | - | 561 | WP_000014116.1 | lytic transglycosylase domain-containing protein | - |
| SL1344_RS24610 () | 73506..74120 | - | 615 | WP_000959785.1 | pilus assembly protein PilX | - |
| SL1344_RS24615 () | 74138..75235 | - | 1098 | WP_001208805.1 | type II secretion system F family protein | - |
| SL1344_RS24620 () | 75248..76801 | - | 1554 | WP_000362202.1 | Flp pilus assembly complex ATPase component TadA | - |
| SL1344_RS24625 () | 76812..77264 | - | 453 | WP_001247336.1 | type IV pilus biogenesis protein PilP | - |
| SL1344_RS24630 () | 77251..78546 | - | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
| SL1344_RS24635 () | 78539..80221 | - | 1683 | WP_000748143.1 | PilN family type IVB pilus formation outer membrane protein | - |
| SL1344_RS24640 () | 80235..80672 | - | 438 | WP_000539807.1 | type IV pilus biogenesis protein PilM | - |
| SL1344_RS24645 () | 80672..81739 | - | 1068 | WP_000742600.1 | type IV pilus biogenesis lipoprotein PilL | - |
| SL1344_RS24650 () | 82413..82865 | - | 453 | WP_000008893.1 | hypothetical protein | - |
| SL1344_RS24655 () | 82908..83162 | - | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| SL1344_RS24660 () | 83430..83996 | - | 567 | WP_000776428.1 | hypothetical protein | - |
| SL1344_RS24665 () | 84010..84693 | - | 684 | WP_000213857.1 | conjugal transfer protein TraC | - |
| SL1344_RS24670 () | 84947..85480 | - | 534 | WP_001303319.1 | transcription termination factor NusG | - |
| SL1344_RS24675 () | 85922..86209 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| SL1344_RS26460 () | 86127..86390 | - | 264 | WP_001324596.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|