MGE detailed information
MGE type: Genomic_island MGE length: 44845 bp
Accession: NC_016445 Location: 343598..388442 Organism: Vibrio cholerae O1 str. 2010EL-1786 Replicon: chromosome
Accession: NC_016445 Location: 343598..388442 Organism: Vibrio cholerae O1 str. 2010EL-1786 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HJ37_RS01505 () | 339972..340655 | - | 684 | WP_000841479.1 | MFS transporter | - |
| HJ37_RS01515 () | 340878..342557 | + | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| HJ37_RS01520 () | 342755..343264 | + | 510 | WP_001077909.1 | hypothetical protein | - |
| HJ37_RS01525 () | 343598..344302 | - | 705 | WP_001880605.1 | NERD domain-containing protein | - |
| HJ37_RS01530 () | 344372..347308 | - | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| HJ37_RS01535 () | 347312..347890 | - | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| HJ37_RS01540 () | 348318..348785 | - | 468 | WP_000804849.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| HJ37_RS01545 () | 348782..350143 | - | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| HJ37_RS01555 () | 350747..351724 | + | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| HJ37_RS18985 () | 351750..352430 | - | 681 | Protein_298 | IS5 family transposase | - |
| HJ37_RS01570 () | 352772..354292 | - | 1521 | WP_000640055.1 | aldehyde dehydrogenase | - |
| HJ37_RS01575 () | 354472..357513 | + | 3042 | WP_001880619.1 | fibronectin type III domain-containing protein | - |
| HJ37_RS01580 () | 357626..362227 | + | 4602 | WP_000482254.1 | membrane protein | - |
| HJ37_RS01585 () | 362224..363162 | + | 939 | WP_001232137.1 | hypothetical protein | - |
| HJ37_RS01590 () | 363272..363766 | + | 495 | WP_000218964.1 | thiol peroxidase | - |
| HJ37_RS01595 () | 364042..365904 | - | 1863 | WP_000591844.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| HJ37_RS01600 () | 366346..367011 | + | 666 | WP_000542596.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| HJ37_RS01605 () | 366996..367406 | + | 411 | WP_000549073.1 | toxin-coregulated pilus protein TcpH | - |
| HJ37_RS01610 () | 367950..368624 | + | 675 | WP_001176375.1 | toxin-coregulated pilus major pilin TcpA | - |
| HJ37_RS01615 () | 368704..369996 | + | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| HJ37_RS01620 () | 369996..370448 | + | 453 | WP_000742753.1 | toxin-coregulated pilus protein TcpQ | - |
| HJ37_RS01625 () | 370451..371920 | + | 1470 | WP_000750979.1 | toxin-coregulated pilus secretin TcpC | - |
| HJ37_RS18990 () | 371913..372368 | + | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| HJ37_RS01635 () | 372356..373192 | + | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| HJ37_RS01640 () | 373208..373666 | + | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| HJ37_RS01645 () | 373656..375167 | + | 1512 | WP_000020697.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| HJ37_RS01650 () | 375142..376164 | + | 1023 | WP_000691946.1 | toxin-coregulated pilus assembly protein TcpE | - |
| HJ37_RS01655 () | 376174..377190 | + | 1017 | WP_001269573.1 | colonization factor TcpF | - |
| HJ37_RS01660 () | 377397..378227 | + | 831 | WP_000579582.1 | pilus/toxin transcriptional regulator ToxT | - |
| HJ37_RS01665 () | 378227..378988 | + | 762 | WP_000456980.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| HJ37_RS01670 () | 378995..380875 | + | 1881 | WP_000672505.1 | methyl-accepting chemotaxis protein AcfB | - |
| HJ37_RS01675 () | 380881..381650 | + | 770 | Protein_320 | accessory colonization factor AcfC | - |
| HJ37_RS01680 () | 381666..382139 | + | 474 | WP_000287237.1 | RDD family protein | - |
| HJ37_RS01685 () | 382148..383056 | + | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| HJ37_RS01690 () | 383059..383706 | - | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| HJ37_RS01695 () | 383880..388442 | + | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| HJ37_RS18995 () | 389073..389309 | - | 237 | WP_001919887.1 | tyrosine-type recombinase/integrase | - |
| HJ37_RS19745 () | 389952..390352 | - | 401 | Protein_326 | transposase | - |
| HJ37_RS01705 () | 390357..391625 | - | 1269 | WP_001107728.1 | tyrosine-type recombinase/integrase | - |
| HJ37_RS01710 () | 392227..392712 | - | 486 | WP_000162689.1 | SsrA-binding protein SmpB | - |
| HJ37_RS01715 () | 392896..393330 | + | 435 | WP_000815876.1 | type II toxin-antitoxin system RatA family toxin | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|