NC_014500756565..934986

MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 178422 bp
Accession: NC_014500        Location: 756565..934986         Organism: Dickeya dadantii 3937       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DDA3937_RS03440 (Dda3937_02268) 751882..752769 - 888 WP_013316394.1 carbohydrate ABC transporter permease -
DDA3937_RS03445 (Dda3937_02267) 752759..753631 - 873 WP_033111599.1 sugar ABC transporter permease -
DDA3937_RS03450 (Dda3937_02266) 753846..754274 + 429 WP_013316396.1 TOBE domain-containing protein -
DDA3937_RS03455 (Dda3937_02265) 754532..755452 + 921 WP_033111600.1 kdo(2)-lipid IV(A) palmitoleoyltransferase -
DDA3937_RS03460 (Dda3937_02263) 756258..757625 + 1368 WP_013316399.1 NCS2 family permease -
DDA3937_RS03465 (Dda3937_02262) 757847..759493 + 1647 WP_013316400.1 Na+/H+ antiporter -
DDA3937_RS03470 (Dda3937_02261) 759540..761198 - 1659 WP_013316401.1 cation/acetate symporter ActP -
DDA3937_RS03475 (Dda3937_02454) 761195..761506 - 312 WP_013316402.1 DUF485 domain-containing protein -
DDA3937_RS03480 (Dda3937_02455) 761628..763589 - 1962 WP_013316403.1 acetate--CoA ligase -
DDA3937_RS03485 (Dda3937_02456) 764360..764752 + 393 WP_013316404.1 hypothetical protein -
DDA3937_RS03490 (Dda3937_04467) 765345..767732 + 2388 WP_013316406.1 TonB-dependent siderophore receptor -
DDA3937_RS03495 (Dda3937_03606) 768664..769818 + 1155 WP_013316408.1 mandelate racemase family protein -
DDA3937_RS03500 (Dda3937_03607) 769945..771555 + 1611 WP_033111601.1 ABC transporter substrate-binding protein -
DDA3937_RS03505 (Dda3937_03608) 771642..772700 + 1059 WP_033111602.1 ABC transporter permease -
DDA3937_RS03510 (Dda3937_03609) 772697..773602 + 906 WP_013316411.1 ABC transporter permease -
DDA3937_RS03515 (Dda3937_01163) 773604..774467 + 864 WP_162467706.1 Oligopeptide transport ATP-binding protein OppD VF
DDA3937_RS03520 (Dda3937_01164) 774510..775283 + 774 WP_023637605.1 Oligopeptide transport ATP-binding protein OppF VF
DDA3937_RS03525 (Dda3937_01165) 775495..775968 + 474 WP_042318736.1 sigma-70 family RNA polymerase sigma factor -
DDA3937_RS03530 (Dda3937_01166) 775973..776926 + 954 WP_013316415.1 DUF4880 domain-containing protein -
DDA3937_RS03535 (Dda3937_01167) 777154..778164 + 1011 WP_013316416.1 AI-2E family transporter -
DDA3937_RS03540 (Dda3937_01169) 778585..780111 - 1527 WP_013316418.1 MFS transporter -
DDA3937_RS03545 (Dda3937_01170) 780565..780774 + 210 WP_013316419.1 helix-turn-helix transcriptional regulator -
DDA3937_RS03550 (Dda3937_01171) 780953..782449 - 1497 WP_013316420.1 fructuronate reductase -
DDA3937_RS03555 (Dda3937_01172) 782551..784155 - 1605 WP_013316421.1 DHA2 family efflux MFS transporter permease subunit -
DDA3937_RS03560 (Dda3937_01173) 784142..785278 - 1137 WP_013316422.1 HlyD family secretion protein -
DDA3937_RS03565 (Dda3937_01174) 785275..785730 - 456 WP_013316423.1 MarR family transcriptional regulator -
DDA3937_RS03570 (Dda3937_01175) 786048..787145 - 1098 WP_013316424.1 L,D-transpeptidase family protein -
DDA3937_RS03575 (Dda3937_01176) 787665..791198 - 3534 WP_013316426.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
DDA3937_RS03580 (Dda3937_01177) 791741..792163 + 423 WP_013316427.1 hypothetical protein -
DDA3937_RS03585 (Dda3937_01178) 792313..792858 + 546 WP_013316428.1 GNAT family N-acetyltransferase -
DDA3937_RS03590 (Dda3937_01179) 792883..793506 - 624 WP_013316429.1 LysE family translocator -
DDA3937_RS03595 (Dda3937_01180) 793603..794328 + 726 WP_013316430.1 YnfC family lipoprotein -
DDA3937_RS03600 (Dda3937_01181) 794458..796026 - 1569 WP_033112214.1 glycoside hydrolase 43 family protein -
DDA3937_RS03605 (Dda3937_01182) 796049..797506 - 1458 WP_033111603.1 glycoside-pentoside-hexuronide (GPH):cation symporter -
DDA3937_RS03610 (Dda3937_01183) 798024..798263 - 240 WP_013316433.1 DinI family protein -
DDA3937_RS03615 (Dda3937_01184) 798578..798973 + 396 WP_013316434.1 VOC family protein -
DDA3937_RS03620 (Dda3937_01185) 798988..799272 + 285 WP_013316435.1 hypothetical protein -
DDA3937_RS03625 (Dda3937_01186) 799329..800429 - 1101 WP_013316436.1 D-alanine--D-alanine ligase -
DDA3937_RS03630 (Dda3937_01187) 800617..801441 + 825 WP_013316437.1 HTH-type transcriptional activator RhaR VF
DDA3937_RS03635 (Dda3937_01188) 801709..803079 + 1371 WP_033111604.1 aspartate aminotransferase family protein -
DDA3937_RS03640 (Dda3937_01189) 803090..804244 + 1155 WP_033111605.1 iron-containing alcohol dehydrogenase -
DDA3937_RS03645 (Dda3937_01190) 804327..805748 + 1422 WP_042318107.1 APC family permease -
DDA3937_RS03650 (Dda3937_01191) 805792..806967 - 1176 WP_033111606.1 MFS transporter -
DDA3937_RS03655 (Dda3937_01192) 807074..807961 + 888 WP_013316442.1 HTH-type transcriptional regulator DmlR VF
DDA3937_RS03660 (Dda3937_01193) 808039..808845 - 807 WP_013316443.1 2,5-didehydrogluconate reductase DkgB -
DDA3937_RS03665 (Dda3937_01195) 809058..809915 - 858 WP_033111607.1 MurR/RpiR family transcriptional regulator -
DDA3937_RS03670 (Dda3937_01197) 810228..811739 + 1512 WP_033111608.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase -
DDA3937_RS03675 (Dda3937_01198) 811767..813698 + 1932 WP_013316448.1 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) -
DDA3937_RS03680 (Dda3937_01199) 813886..814347 - 462 WP_013316449.1 DNA gyrase inhibitor SbmC -
DDA3937_RS03685 (Dda3937_01200) 814606..815904 - 1299 WP_013316450.1 Biofilm dispersion protein BdlA VF
DDA3937_RS23020 816227..816424 - 198 WP_148226860.1 hypothetical protein -
DDA3937_RS03690 (Dda3937_01201) 816783..817532 - 750 WP_013316451.1 AAA family ATPase -
DDA3937_RS03695 (Dda3937_01202) 817691..818161 - 471 WP_013316452.1 hypothetical protein -
DDA3937_RS03700 (Dda3937_01203) 818314..819300 + 987 WP_033111609.1 inositol 2-dehydrogenase -
DDA3937_RS03705 (Dda3937_01204) 819439..820377 + 939 WP_033111610.1 substrate-binding domain-containing protein -
DDA3937_RS03710 (Dda3937_01205) 820434..821981 + 1548 WP_013316455.1 Ribose import ATP-binding protein RbsA VF
DDA3937_RS03715 (Dda3937_01206) 821998..823032 + 1035 WP_033112216.1 ABC transporter permease -
DDA3937_RS03720 (Dda3937_01207) 823050..824183 + 1134 WP_013316457.1 Gfo/Idh/MocA family oxidoreductase -
DDA3937_RS03725 (Dda3937_01208) 824238..826223 + 1986 WP_033111611.1 5-dehydro-2-deoxygluconokinase -
DDA3937_RS03730 (Dda3937_01209) 826250..827140 + 891 WP_033111612.1 myo-inosose-2 dehydratase -
DDA3937_RS03735 (Dda3937_01210) 827165..827992 + 828 WP_013316460.1 5-deoxy-glucuronate isomerase -
DDA3937_RS03740 (Dda3937_01211) 828352..829341 + 990 WP_013316461.1 IS110 family transposase IS1663 Transposase
DDA3937_RS03745 (Dda3937_01212) 829602..830705 - 1104 WP_013316463.1 lytic murein transglycosylase B -
DDA3937_RS03750 (Dda3937_01213) 830808..831731 - 924 WP_013316464.1 LysR family transcriptional regulator -
DDA3937_RS03755 (Dda3937_01214) 831912..833126 + 1215 WP_013316465.1 MFS transporter -
DDA3937_RS03760 (Dda3937_01215) 833154..834266 + 1113 WP_013316466.1 o-succinylbenzoate synthase -
DDA3937_RS03765 (Dda3937_01216) 834513..835445 + 933 WP_033111613.1 nucleoside recognition family protein -
DDA3937_RS21865 835498..835770 - 273 WP_033111614.1 zinc-ribbon domain-containing protein -
DDA3937_RS03775 (Dda3937_01217) 836339..837121 - 783 WP_033112217.1 transporter substrate-binding domain-containing protein -
DDA3937_RS03780 (Dda3937_01218) 837616..838251 - 636 WP_013316470.1 NAD(P)H-binding protein -
DDA3937_RS03785 (Dda3937_04472) 838308..838715 - 408 WP_033111615.1 DoxX family protein -
DDA3937_RS03790 (Dda3937_01219) 838796..839182 + 387 WP_013316472.1 helix-turn-helix transcriptional regulator -
DDA3937_RS03795 (Dda3937_01220) 839389..840210 - 822 WP_033111617.1 putative oxidoreductase VF
DDA3937_RS03800 (Dda3937_01221) 840311..841597 - 1287 WP_013316474.1 beta-ketoacyl-ACP synthase II -
DDA3937_RS03805 (Dda3937_01222) 841643..842449 - 807 WP_013316475.1 putative oxidoreductase VF
DDA3937_RS03810 (Dda3937_01223) 842493..845558 - 3066 WP_013316476.1 efflux RND transporter permease subunit -
DDA3937_RS03815 (Dda3937_01224) 845555..846670 - 1116 WP_013316477.1 efflux RND transporter periplasmic adaptor subunit -
DDA3937_RS03820 (Dda3937_01225) 846764..847381 - 618 WP_013316478.1 TetR/AcrR family transcriptional regulator -
DDA3937_RS03825 (Dda3937_01226) 847507..848985 + 1479 WP_013316479.1 Outer membrane protein OprM VF
DDA3937_RS03830 (Dda3937_01227) 849018..850427 + 1410 WP_013316480.1 MATE family efflux transporter -
DDA3937_RS03840 (Dda3937_04473) 850960..852069 + 1110 Protein_756 IS3 family transposase -
DDA3937_RS03845 (Dda3937_01703) 852351..853034 + 684 WP_033111618.1 hypothetical protein -
DDA3937_RS03850 (Dda3937_01704) 853255..858222 + 4968 WP_013316484.1 NACHT domain-containing protein -
DDA3937_RS03855 (Dda3937_01705) 858294..859532 - 1239 WP_013316485.1 Prophage integrase IntA ; Integrase Integrase
DDA3937_RS03860 (Dda3937_01706) 859910..861085 - 1176 WP_013316486.1 Putative defective protein IntQ ; Integrase Integrase
DDA3937_RS03870 (Dda3937_01707) 861642..862151 + 510 WP_033111620.1 DNA repair protein RadC -
DDA3937_RS03875 (Dda3937_01708) 862746..863057 + 312 WP_012768885.1 DUF736 domain-containing protein -
DDA3937_RS03880 (Dda3937_01709) 863257..863496 + 240 WP_013316490.1 type II toxin-antitoxin system CcdA family antitoxin Antitoxin Detail
DDA3937_RS03885 (Dda3937_01710) 863499..863807 + 309 WP_013316491.1 CcdB family protein Toxin Detail
DDA3937_RS03890 (Dda3937_01711) 863993..864589 + 597 WP_148226861.1 hypothetical protein -
DDA3937_RS21875 (Dda3937_01712) 864924..865721 + 798 WP_013316493.1 DUF2285 domain-containing protein -
DDA3937_RS03895 865805..866101 + 297 WP_033111622.1 helix-turn-helix domain-containing protein -
DDA3937_RS03900 (Dda3937_01714) 866128..866940 + 813 WP_013316495.1 replication initiator protein A -
DDA3937_RS03905 (Dda3937_01716) 867230..867796 + 567 WP_148226862.1 S26 family signal peptidase -
DDA3937_RS03910 (Dda3937_01717) 867997..869937 + 1941 WP_033111624.1 relaxase/mobilization nuclease and DUF3363 domain-containing protein -
DDA3937_RS21880 870043..870257 + 215 Protein_771 integrase -
DDA3937_RS03920 (Dda3937_01719) 870481..872130 + 1650 WP_013316501.1 DNA phosphorothioation-dependent restriction protein DptF -
DDA3937_RS03925 (Dda3937_01720) 872135..873460 + 1326 WP_013316502.1 DNA phosphorothioation-dependent restriction protein DptG -
DDA3937_RS03930 (Dda3937_01721) 873441..878521 + 5081 Protein_774 DNA phosphorothioation-dependent restriction protein DptH -
DDA3937_RS03935 (Dda3937_01723) 878544..879647 + 1104 WP_033111626.1 hypothetical protein -
DDA3937_RS21885 (Dda3937_01724) 879640..880596 + 957 WP_071819868.1 hypothetical protein -
DDA3937_RS03945 (Dda3937_01725) 880697..881050 - 354 WP_013316505.1 DNA sulfur modification protein DndE -
DDA3937_RS03950 (Dda3937_01726) 881050..883059 - 2010 WP_033112219.1 DNA sulfur modification protein DndD -
DDA3937_RS03955 (Dda3937_01727) 883049..884683 - 1635 WP_013316507.1 DNA phosphorothioation system sulfurtransferase DndC -
DDA3937_RS03960 (Dda3937_01728) 884680..885765 - 1086 WP_013316508.1 DNA sulfur modification protein DndB -
DDA3937_RS21890 (Dda3937_01729) 886515..886736 + 222 Protein_781 DUF3363 domain-containing protein -
DDA3937_RS03965 (Dda3937_01730) 886774..887124 - 351 WP_013316511.1 helix-turn-helix domain-containing protein -
DDA3937_RS03970 (Dda3937_01732) 887755..888093 - 339 WP_042318120.1 helix-turn-helix domain-containing protein -
DDA3937_RS03975 (Dda3937_01733) 888233..888538 + 306 WP_013316514.1 helix-turn-helix domain-containing protein -
DDA3937_RS03980 (Dda3937_01734) 888714..889628 + 915 WP_033111628.1 Hca operon transcriptional activator HcaR VF
DDA3937_RS21900 (Dda3937_01735) 889653..889913 + 261 WP_013316516.1 hypothetical protein -
DDA3937_RS03985 (Dda3937_01736) 890131..892086 + 1956 WP_033111629.1 Conjugal transfer protein TraG VF
DDA3937_RS03990 (Dda3937_01737) 892083..892523 + 441 WP_013316518.1 CopG family transcriptional regulator -
DDA3937_RS03995 (Dda3937_01738) 892577..893530 + 954 WP_193345739.1 Type IV secretion system protein PtlH VF
DDA3937_RS04000 (Dda3937_01739) 893530..893874 + 345 WP_167535243.1 TrbC/VirB2 family protein -
DDA3937_RS04005 (Dda3937_01740) 893871..894143 + 273 WP_013316521.1 VirB3 family type IV secretion system protein -
DDA3937_RS04010 (Dda3937_01741) 894154..896604 + 2451 WP_033111630.1 conjugal transfer protein TrbE -
DDA3937_RS04015 (Dda3937_01742) 896604..897335 + 732 WP_033111631.1 P-type conjugative transfer protein TrbJ -
DDA3937_RS04020 (Dda3937_01743) 897335..898498 + 1164 WP_033111632.1 P-type conjugative transfer protein TrbL -
DDA3937_RS04025 (Dda3937_01744) 898501..899205 + 705 WP_033111633.1 conjugal transfer protein TrbF -
DDA3937_RS04030 (Dda3937_01745) 899202..900098 + 897 WP_042318124.1 Type IV secretion system protein virB9 VF
DDA3937_RS04035 (Dda3937_01746) 900101..901339 + 1239 WP_033111634.1 Type IV secretion system protein virB10 VF
DDA3937_RS04040 (Dda3937_01747) 901385..901696 - 312 WP_013316528.1 type II toxin-antitoxin system RelE/ParE family toxin -
DDA3937_RS04045 (Dda3937_01748) 901693..901977 - 285 WP_013316529.1 DNA-damage-inducible protein J -
DDA3937_RS04050 (Dda3937_01749) 902452..903081 + 630 WP_013316531.1 AAA family ATPase -
DDA3937_RS04055 (Dda3937_01750) 903078..903527 + 450 WP_013316532.1 hypothetical protein -
DDA3937_RS21905 (Dda3937_04478) 903527..904039 + 513 WP_013316533.1 restriction endonuclease -
DDA3937_RS04065 (Dda3937_01751) 904677..905078 - 402 WP_033111636.1 H-NS histone family protein -
DDA3937_RS04070 (Dda3937_01753) 905379..905597 - 219 WP_012768900.1 helix-turn-helix domain-containing protein -
DDA3937_RS21910 (Dda3937_01754) 905690..905920 - 231 WP_013316538.1 helix-turn-helix domain-containing protein -
DDA3937_RS04080 (Dda3937_01755) 906023..906268 + 246 WP_013316539.1 helix-turn-helix domain-containing protein -
DDA3937_RS23025 906320..906547 - 228 Protein_807 IS1 family transposase -
DDA3937_RS04085 (Dda3937_01756) 906577..906903 + 327 WP_033111638.1 hypothetical protein -
DDA3937_RS04090 (Dda3937_01757) 906975..907382 - 408 WP_013316541.1 immunity protein RhsIA -
DDA3937_RS04095 (Dda3937_01758) 907392..911696 - 4305 WP_013316542.1 PAAR domain-containing protein -
DDA3937_RS04100 (Dda3937_01759) 911708..912115 - 408 WP_013316543.1 DUF1795 domain-containing protein -
DDA3937_RS04105 (Dda3937_01760) 912129..913982 - 1854 WP_013316544.1 Actin cross-linking toxin VgrG1 VF
DDA3937_RS04110 (Dda3937_01761) 914093..914611 - 519 WP_013316545.1 Major exported protein VF
DDA3937_RS04115 (Dda3937_01762) 915452..916543 - 1092 WP_013316546.1 Tyrosine recombinase XerD ; Integrase Integrase
DDA3937_RS04120 (Dda3937_01763) 916651..917022 - 372 WP_033111639.1 ASCH domain-containing protein -
DDA3937_RS04125 (Dda3937_01764) 917000..918073 - 1074 WP_033111640.1 acetyltransferase -
DDA3937_RS04130 918075..918857 - 783 WP_033111641.1 hypothetical protein -
DDA3937_RS04135 (Dda3937_01765) 918861..919712 - 852 WP_033112222.1 helix-turn-helix domain-containing protein -
DDA3937_RS23030 919836..920054 - 219 Protein_819 helix-turn-helix domain containing protein -
DDA3937_RS04140 (Dda3937_01766) 920173..920394 + 222 WP_013316550.1 hypothetical protein -
DDA3937_RS04145 (Dda3937_01767) 920427..920936 + 510 WP_013316551.1 phage regulatory CII family protein -
DDA3937_RS23480 (Dda3937_01768) 921033..921188 + 156 WP_167535238.1 hypothetical protein -
DDA3937_RS04150 (Dda3937_01769) 921201..921530 + 330 WP_013316553.1 hypothetical protein -
DDA3937_RS04155 (Dda3937_04480) 921601..921828 + 228 WP_013316554.1 DUF2732 domain-containing protein -
DDA3937_RS04160 (Dda3937_01770) 921828..922151 + 324 WP_012883471.1 DUF5405 family protein -
DDA3937_RS04165 (Dda3937_01771) 922148..924190 + 2043 WP_013316555.1 replication endonuclease -
DDA3937_RS23035 924557..925606 - 1050 WP_042318135.1 Fic family protein -
DDA3937_RS23405 926084..926239 + 156 WP_158305115.1 hypothetical protein -
DDA3937_RS04180 (Dda3937_02576) 926246..926512 - 267 WP_193345740.1 ogr/Delta-like zinc finger family protein -
DDA3937_RS04185 (Dda3937_02575) 926566..927615 - 1050 WP_013316558.1 phage portal protein -
DDA3937_RS04190 (Dda3937_02574) 927591..929366 - 1776 WP_013316559.1 terminase family protein -
DDA3937_RS04195 (Dda3937_02573) 929523..930359 + 837 WP_148226863.1 GPO family capsid scaffolding protein -
DDA3937_RS04200 (Dda3937_02572) 930414..931445 + 1032 WP_033111643.1 phage major capsid protein, P2 family -
DDA3937_RS04205 (Dda3937_02571) 931449..932150 + 702 WP_013316562.1 terminase -
DDA3937_RS04210 (Dda3937_02570) 932247..932699 + 453 WP_042318140.1 head completion/stabilization protein -
DDA3937_RS04215 (Dda3937_02569) 932696..933193 + 498 WP_013316564.1 phage tail protein -
DDA3937_RS04220 (Dda3937_02568) 933190..933894 + 705 WP_013316565.1 hypothetical protein -
DDA3937_RS04225 (Dda3937_02567) 933897..935012 + 1116 WP_013316566.1 DUF2586 domain-containing protein -
DDA3937_RS04230 (Dda3937_02566) 935009..935464 + 456 WP_012883485.1 DUF2597 family protein -
DDA3937_RS04235 (Dda3937_02565) 935473..935778 + 306 WP_013316567.1 phage holin family protein -
DDA3937_RS04240 (Dda3937_02564) 935765..936106 + 342 WP_033111644.1 M15 family metallopeptidase -
DDA3937_RS04245 (Dda3937_02563) 936106..936462 + 357 WP_033111645.1 hypothetical protein -
DDA3937_RS04250 (Dda3937_02562) 936595..936852 + 258 WP_012883490.1 putative phage tail assembly chaperone -
DDA3937_RS04255 (Dda3937_02561) 937040..939004 + 1965 WP_013316571.1 phage tail tape measure protein -
DDA3937_RS04260 (Dda3937_02560) 939004..939333 + 330 WP_033111646.1 DUF2590 family protein -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance