MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 68342 bp
Accession: NC_014017 Location: 1..68342 Organism: Yersinia pestis Z176003 Replicon: plasmid pCD1
Accession: NC_014017 Location: 1..68342 Organism: Yersinia pestis Z176003 Replicon: plasmid pCD1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YPZ3_RS21130 () | 348..992 | + | 645 | Protein_1 | IS3 family transposase ISYen3 | Transposase |
| YPZ3_RS21135 () | 1055..1447 | - | 393 | WP_002213403.1 | YopE regulator | VF |
| YPZ3_RS21140 () | 1641..2300 | + | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| YPZ3_RS21145 () | 2440..2739 | - | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| YPZ3_RS21150 () | 2732..2974 | - | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| YPZ3_RS23940 () | 3140..3432 | - | 293 | Protein_6 | IS6 family transposase ISEas1 | Transposase |
| YPZ3_RS24795 () | 3519..3692 | + | 174 | WP_002213357.1 | hypothetical protein | - |
| YPZ3_RS24615 () | 3841..4077 | - | 237 | WP_154020274.1 | hypothetical protein | - |
| YPZ3_RS21160 () | 4237..5202 | - | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| YPZ3_RS21165 () | 5199..6365 | - | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| YPZ3_RS24475 () | 7125..8270 | - | 1146 | Protein_11 | IS3 family transposase | - |
| YPZ3_RS21185 () | 8377..9006 | - | 630 | WP_002229770.1 | hypothetical protein | - |
| YPZ3_RS23950 () | 9152..9445 | - | 294 | Protein_13 | IS3 family transposase | - |
| YPZ3_RS21190 () | 9604..10152 | - | 549 | WP_002213007.1 | hypothetical protein | VF |
| YPZ3_RS21195 () | 10652..11620 | + | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
| YPZ3_RS21200 () | 11620..12018 | + | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| YPZ3_RS23500 () | 12424..12705 | + | 282 | Protein_17 | DDE-type integrase/transposase/recombinase | - |
| YPZ3_RS21210 () | 12723..13142 | + | 420 | WP_002222515.1 | hypothetical protein | - |
| YPZ3_RS24480 () | 13670..13888 | - | 219 | Protein_19 | IS6 family transposase | - |
| YPZ3_RS24485 () | 13891..14136 | + | 246 | WP_116442925.1 | transposase | - |
| YPZ3_RS21215 () | 14018..14335 | + | 318 | Protein_21 | IS256 family transposase ISSod4 | Transposase |
| YPZ3_RS21220 () | 14378..15607 | - | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| YPZ3_RS21225 () | 16001..16210 | - | 210 | WP_002229781.1 | hypothetical protein | - |
| YPZ3_RS23955 () | 16231..16868 | + | 638 | Protein_24 | IS6 family transposase | - |
| YPZ3_RS21230 () | 17336..18256 | - | 921 | WP_002212987.1 | Protein YopD | VF |
| YPZ3_RS21235 () | 18275..19480 | - | 1206 | WP_002212985.1 | Protein YopB | VF |
| YPZ3_RS21240 () | 19458..19964 | - | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| YPZ3_RS21245 () | 19977..20957 | - | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| YPZ3_RS21250 () | 20959..21246 | - | 288 | WP_002212973.1 | hypothetical protein | VF |
| YPZ3_RS21255 () | 21288..21728 | - | 441 | WP_002220918.1 | hypothetical protein | VF |
| YPZ3_RS21260 () | 21725..23839 | - | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| YPZ3_RS21265 () | 23826..24170 | - | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| YPZ3_RS21270 () | 24167..24535 | - | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| YPZ3_RS21275 () | 24532..24903 | - | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| YPZ3_RS21280 () | 24890..25168 | - | 279 | WP_002212965.1 | Protein TyeA | VF |
| YPZ3_RS21285 () | 25149..26030 | - | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| YPZ3_RS21290 () | 26228..27547 | + | 1320 | WP_002212955.1 | putative ATP synthase YscN | VF |
| YPZ3_RS21295 () | 27544..28008 | + | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| YPZ3_RS21300 () | 28008..29375 | + | 1368 | WP_002212950.1 | hypothetical protein | VF |
| YPZ3_RS21305 () | 29372..30295 | + | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| YPZ3_RS21310 () | 30292..30945 | + | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| YPZ3_RS21315 () | 30947..31213 | + | 267 | WP_002212945.1 | hypothetical protein | VF |
| YPZ3_RS21320 () | 31210..31995 | + | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| YPZ3_RS21325 () | 31995..33059 | + | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| YPZ3_RS21330 () | 33635..34030 | + | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| YPZ3_RS21335 () | 34154..34969 | + | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| YPZ3_RS21340 () | 35048..35146 | + | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| YPZ3_RS21345 () | 35372..35785 | + | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| YPZ3_RS21350 () | 35791..37614 | + | 1824 | WP_002212923.1 | Yop proteins translocation protein C | VF |
| YPZ3_RS21355 () | 37611..38870 | + | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| YPZ3_RS21360 () | 38867..39067 | + | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| YPZ3_RS21365 () | 39068..39331 | + | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| YPZ3_RS21370 () | 39333..39680 | + | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| YPZ3_RS21375 () | 39677..40174 | + | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| YPZ3_RS21380 () | 40175..40522 | + | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| YPZ3_RS21385 () | 40529..41263 | + | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| YPZ3_RS21390 () | 41263..41892 | + | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| YPZ3_RS21395 () | 41838..42503 | + | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| YPZ3_RS21400 () | 42728..43075 | + | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| YPZ3_RS23960 () | 43623..44652 | + | 1030 | Protein_60 | IS3 family transposase | - |
| YPZ3_RS23530 () | 44671..44943 | + | 273 | Protein_61 | transposase | - |
| YPZ3_RS21420 () | 45164..46570 | - | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| YPZ3_RS21425 () | 46853..47086 | - | 234 | Protein_63 | transposase domain-containing protein | - |
| YPZ3_RS21430 () | 47089..47667 | + | 579 | Protein_64 | IS3 family transposase ISYpe1 | Transposase |
| YPZ3_RS21435 () | 48253..49119 | - | 867 | WP_002213287.1 | Effector protein YopJ | VF |
| YPZ3_RS21440 () | 49515..51713 | - | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| YPZ3_RS21445 () | 51721..52170 | - | 450 | WP_002229809.1 | hypothetical protein | VF |
| YPZ3_RS23965 () | 52426..52738 | - | 313 | Protein_68 | IS3 family transposase ISKpn37 | Transposase |
| YPZ3_RS23545 () | 52916..53155 | - | 240 | WP_002213291.1 | hypothetical protein | - |
| YPZ3_RS21455 () | 54328..55206 | - | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| YPZ3_RS21460 () | 55187..55261 | - | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| YPZ3_RS21465 () | 55503..55757 | - | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| YPZ3_RS21470 () | 55895..56143 | - | 249 | WP_002233137.1 | Phospholipase D | VF |
| YPZ3_RS23555 () | 56269..56577 | + | 309 | Protein_74 | DDE-type integrase/transposase/recombinase | - |
| YPZ3_RS24500 () | 56560..56967 | - | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| YPZ3_RS21480 () | 56991..57308 | - | 318 | WP_002213244.1 | IS3 family transposase ISKpn37 | Transposase |
| YPZ3_RS21485 () | 57480..57938 | - | 459 | WP_002213246.1 | hypothetical protein | - |
| YPZ3_RS21490 () | 58007..58276 | + | 270 | WP_042469136.1 | transposase | - |
| YPZ3_RS24800 () | 58374..58532 | - | 159 | Protein_79 | EamA family transporter | - |
| YPZ3_RS23565 () | 58602..59905 | - | 1304 | Protein_80 | Adhesin YadA | VF |
| YPZ3_RS21510 () | 60505..60855 | + | 351 | Protein_81 | IS3 family transposase IS1351 | Transposase |
| YPZ3_RS21515 () | 60888..63203 | - | 2316 | WP_002213256.1 | Tn3 family transposase ISEc63 | Transposase |
| YPZ3_RS21520 () | 63367..63918 | + | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| YPZ3_RS21525 () | 63937..64401 | + | 465 | WP_002224338.1 | hypothetical protein | - |
| YPZ3_RS21530 () | 64540..64869 | + | 330 | WP_002229829.1 | hypothetical protein | - |
| YPZ3_RS21540 () | 64969..66068 | + | 1100 | WP_086016640.1 | IS3 family transposase ISYpe1 | Transposase |
| YPZ3_RS21545 () | 66216..66641 | - | 426 | WP_002213267.1 | hypothetical protein | VF |
| YPZ3_RS21550 () | 67017..67415 | - | 399 | Protein_88 | IS21 family transposase IS21 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|